mRNA_H-elongata_contig189619.5218.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig189619.5218.1
Unique NamemRNA_H-elongata_contig189619.5218.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig189619.5218.1 vs. uniprot
Match: D8LD00_ECTSI (Protein arginine methyltransferase NDUFAF7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD00_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 4.030e-30
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 1
Query:    1 QVSVLADPGEADMTADVNFGLLRRIVAGVKGAQPHGPVGQGQFLREMGIGARLTALAEQPSVTDEQ 198
            +V VL+DPGEADMTADVNFGLLRR+VAGV+GA+PHGPVGQGQFLREMGIGARLTALAEQP VT EQ
Sbjct:  381 EVPVLSDPGEADMTADVNFGLLRRVVAGVEGARPHGPVGQGQFLREMGIGARLTALAEQPHVTAEQ 446          
BLAST of mRNA_H-elongata_contig189619.5218.1 vs. uniprot
Match: A0A7S2BLT6_9STRA (Protein arginine methyltransferase NDUFAF7 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BLT6_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 7.360e-14
Identity = 38/68 (55.88%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    1 QVSVLADPGEADMTADVNFGLLRRIVAGVK--GAQPHGPVGQGQFLREMGIGARLTALAEQPSVTDEQ 198
            +V VL+ PGE D+TADVNFG LRR V  +K  G   HGPV Q +FL  +GI  RL AL E    TDEQ
Sbjct:   63 EVDVLSSPGEVDLTADVNFGSLRRTVEAMKNLGVACHGPVPQSEFLARLGIQDRLVALIEDDRTTDEQ 130          
BLAST of mRNA_H-elongata_contig189619.5218.1 vs. uniprot
Match: A0A836CMV2_9STRA (Protein arginine methyltransferase NDUFAF7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMV2_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.150e-13
Identity = 37/66 (56.06%), Postives = 43/66 (65.15%), Query Frame = 1
Query:    1 QVSVLADPGEADMTADVNFGLLRRIVAGVKGAQPHGPVGQGQFLREMGIGARLTALAEQPSVTDEQ 198
            +V VLA+PG AD+TADV+F  LRR    V GA  HGPV QG FL+ MG   R   L EQP +TD Q
Sbjct:  339 EVHVLAEPGMADITADVDFAALRRCADAVPGAVCHGPVPQGVFLQTMGAAERAAVLVEQPHITDAQ 404          
BLAST of mRNA_H-elongata_contig189619.5218.1 vs. uniprot
Match: A0A1Z5K2T2_FISSO (Protein arginine methyltransferase NDUFAF7 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K2T2_FISSO)

HSP 1 Score: 67.8 bits (164), Expect = 1.290e-11
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = 1
Query:    1 QVSVLADPGEADMTADVNFGLLRRIVAGVKGAQPHGPVGQGQFLREMGIGARLTALAEQPSVTDEQ 198
            QV  L+ PG+ D+TADV+FG LR  +      Q HGPVGQG+FL  MG+  R+  L E+  VTDEQ
Sbjct:  456 QVPFLSQPGQVDVTADVDFGALRHAIPD----QAHGPVGQGEFLMRMGLQERVVQLLERDDVTDEQ 517          
BLAST of mRNA_H-elongata_contig189619.5218.1 vs. uniprot
Match: UPI0003B6D86B (SAM-dependent methyltransferase n=1 Tax=Fodinicurvata sediminis TaxID=1121832 RepID=UPI0003B6D86B)

HSP 1 Score: 65.1 bits (157), Expect = 1.060e-10
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 1
Query:   10 VLADPGEADMTADVNFGLLRRIVAGVKGAQPHGPVGQGQFLREMGIGARLTALAE 174
            VL DPGEAD+TA V+FG L+R      GA+PHGP+GQG FL+ +GI  R + L E
Sbjct:  262 VLTDPGEADLTAHVDFGALKRTAESA-GARPHGPIGQGPFLKSLGIETRASLLGE 315          
BLAST of mRNA_H-elongata_contig189619.5218.1 vs. uniprot
Match: A0A4D9DBZ3_9STRA (Protein arginine methyltransferase NDUFAF7 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DBZ3_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 6.610e-9
Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 1
Query:    4 VSVLADPGEADMTADVNFGLLRRIVAGVKGAQPHGPVGQGQFLREMGIGARLTALA-----EQPSVTDEQ 198
            V  LA+PGE D++ADV+F  LR  VA V+G +  GP+ QG+FL  MGI ARL AL      E   +TD Q
Sbjct:  355 VHPLAEPGEVDLSADVDFQGLREAVAHVEGLRVFGPMSQGEFLSAMGIEARLQALLDGEGEEGSGLTDRQ 424          
BLAST of mRNA_H-elongata_contig189619.5218.1 vs. uniprot
Match: K3XAC3_GLOUD (Protein arginine methyltransferase NDUFAF7 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XAC3_GLOUD)

HSP 1 Score: 59.3 bits (142), Expect = 1.240e-8
Identity = 32/70 (45.71%), Postives = 42/70 (60.00%), Query Frame = 1
Query:    4 VSVLADPGEADMTADVNFGLLRRIVAGVKGAQPHGPVGQGQFLREMGIGARLTAL---AEQPSVTDEQVA 204
            VSVL +PG+ D++ DV+F  LRR     +  +  GP+GQG FL+ MGI  RL AL   AE   V +E  A
Sbjct:  425 VSVLREPGDVDLSIDVDFATLRRYATAEENVKGFGPIGQGAFLKNMGIEHRLAALLQNAESEEVQEELFA 494          
BLAST of mRNA_H-elongata_contig189619.5218.1 vs. uniprot
Match: A0A0M3KEY9_ANISI (Protein arginine methyltransferase NDUFAF7 n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A0M3KEY9_ANISI)

HSP 1 Score: 57.0 bits (136), Expect = 1.420e-8
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 1
Query:    4 VSVLADPGEADMTADVNFGLLRRIVAGVKGAQPHGPVGQGQFLREMGIGARLTALAEQPSVTDEQV 201
            V+ L +PGE D+TADVNFG L+ ++     A   GP+ Q +FL ++GIG RL  L E+ S  D+QV
Sbjct:   24 VNPLQNPGEHDLTADVNFGYLKSLIE--DRALVFGPLDQREFLAQLGIGIRLRRLVEKCSNRDDQV 87          
BLAST of mRNA_H-elongata_contig189619.5218.1 vs. uniprot
Match: A0A4Q2RD95_9HYPH (Class I SAM-dependent methyltransferase n=1 Tax=Lichenibacterium ramalinae TaxID=2316527 RepID=A0A4Q2RD95_9HYPH)

HSP 1 Score: 58.9 bits (141), Expect = 1.620e-8
Identity = 34/64 (53.12%), Postives = 41/64 (64.06%), Query Frame = 1
Query:   13 LADPGEADMTADVNFGLLRRIVAGVKGAQPHGPVGQGQFLREMGIGARLTALAEQPSVTDEQVA 204
            LA+PGEAD++A V+FG LRR   G  GA  HGPV QG FLR +GI  R  AL  +   T +Q A
Sbjct:  258 LAEPGEADLSAQVDFGGLRRAAEGA-GAAVHGPVPQGTFLRALGIAERAEALTAR--ATPDQAA 318          
BLAST of mRNA_H-elongata_contig189619.5218.1 vs. uniprot
Match: UPI0004152B28 (SAM-dependent methyltransferase n=1 Tax=Methylocapsa acidiphila TaxID=133552 RepID=UPI0004152B28)

HSP 1 Score: 58.9 bits (141), Expect = 1.620e-8
Identity = 30/52 (57.69%), Postives = 35/52 (67.31%), Query Frame = 1
Query:   13 LADPGEADMTADVNFGLLRRIVAGVKGAQPHGPVGQGQFLREMGIGARLTAL 168
            L DPGEAD+T  V+F  L  + A   GAQPHGPV QG+FLR +GI  R  AL
Sbjct:  259 LRDPGEADLTTHVDFRALS-LAAAAAGAQPHGPVAQGEFLRRLGIFERAAAL 309          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig189619.5218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD00_ECTSI4.030e-3087.88Protein arginine methyltransferase NDUFAF7 n=2 Tax... [more]
A0A7S2BLT6_9STRA7.360e-1455.88Protein arginine methyltransferase NDUFAF7 n=1 Tax... [more]
A0A836CMV2_9STRA2.150e-1356.06Protein arginine methyltransferase NDUFAF7 n=1 Tax... [more]
A0A1Z5K2T2_FISSO1.290e-1151.52Protein arginine methyltransferase NDUFAF7 n=2 Tax... [more]
UPI0003B6D86B1.060e-1056.36SAM-dependent methyltransferase n=1 Tax=Fodinicurv... [more]
A0A4D9DBZ3_9STRA6.610e-950.00Protein arginine methyltransferase NDUFAF7 n=2 Tax... [more]
K3XAC3_GLOUD1.240e-845.71Protein arginine methyltransferase NDUFAF7 n=1 Tax... [more]
A0A0M3KEY9_ANISI1.420e-846.97Protein arginine methyltransferase NDUFAF7 n=1 Tax... [more]
A0A4Q2RD95_9HYPH1.620e-853.13Class I SAM-dependent methyltransferase n=1 Tax=Li... [more]
UPI0004152B281.620e-857.69SAM-dependent methyltransferase n=1 Tax=Methylocap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig189619contigH-elongata_contig189619:146..352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.2
Seed ortholog evalue1.5e-24
Seed eggNOG ortholog2880.D8LD00
KEGG koko:K18164
KEGG Pathwayko04714,map04714
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005975,GO:0005976,GO:0005977,GO:0006073,GO:0006082,GO:0006091,GO:0006112,GO:0006139,GO:0006163,GO:0006520,GO:0006536,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006907,GO:0006909,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009064,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009266,GO:0009314,GO:0009416,GO:0009453,GO:0009605,GO:0009628,GO:0009653,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010257,GO:0010506,GO:0010507,GO:0010638,GO:0010821,GO:0010822,GO:0015980,GO:0016043,GO:0016192,GO:0017144,GO:0019222,GO:0019637,GO:0019693,GO:0019752,GO:0022603,GO:0022607,GO:0030154,GO:0030435,GO:0030587,GO:0031154,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0032502,GO:0032981,GO:0033043,GO:0033108,GO:0034622,GO:0034641,GO:0040011,GO:0042330,GO:0042331,GO:0043052,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043933,GO:0043934,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046034,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055086,GO:0055114,GO:0065003,GO:0065007,GO:0071704,GO:0071840,GO:0072521,GO:0090140,GO:0090141,GO:0090702,GO:0098657,GO:0099120,GO:1901135,GO:1901360,GO:1901564,GO:1901605
EggNOG free text desc.protein-arginine omega-N symmetric methyltransferase activity
EggNOG OGsCOG1565@1,KOG2901@2759
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930083.8391504-CDS-H-elongata_contig189619:145..3521622930083.8391504-CDS-H-elongata_contig189619:145..352Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189619 146..352 -
1691679274.5699596-CDS-H-elongata_contig189619:145..3521691679274.5699596-CDS-H-elongata_contig189619:145..352Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189619 146..352 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig189619.5218.1prot_H-elongata_contig189619.5218.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig189619 146..352 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig189619.5218.1

>prot_H-elongata_contig189619.5218.1 ID=prot_H-elongata_contig189619.5218.1|Name=mRNA_H-elongata_contig189619.5218.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
QVSVLADPGEADMTADVNFGLLRRIVAGVKGAQPHGPVGQGQFLREMGIG
ARLTALAEQPSVTDEQVA*
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mRNA from alignment at H-elongata_contig189619:146..352-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig189619.5218.1 ID=mRNA_H-elongata_contig189619.5218.1|Name=mRNA_H-elongata_contig189619.5218.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig189619:146..352- (Himanthalia elongata Himel1 dioecious)
CAGGTGTCCGTACTAGCTGATCCCGGCGAAGCTGACATGACGGCCGACGT CAACTTTGGGTTGTTGAGGCGTATCGTGGCCGGGGTGAAGGGGGCTCAGC CACATGGGCCCGTGGGACAGGGACAGTTCCTACGGGAAATGGGCATCGGG GCAAGGCTCACTGCGTTGGCGGAGCAGCCGTCCGTTACGGACGAACAGGT AGCATAA
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Coding sequence (CDS) from alignment at H-elongata_contig189619:146..352-

>mRNA_H-elongata_contig189619.5218.1 ID=mRNA_H-elongata_contig189619.5218.1|Name=mRNA_H-elongata_contig189619.5218.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig189619:146..352- (Himanthalia elongata Himel1 dioecious)
CAGGTGTCCGTACTAGCTGATCCCGGCGAAGCTGACATGACGGCCGACGT
CAACTTTGGGTTGTTGAGGCGTATCGTGGCCGGGGTGAAGGGGGCTCAGC
CACATGGGCCCGTGGGACAGGGACAGTTCCTACGGGAAATGGGCATCGGG
GCAAGGCTCACTGCGTTGGCGGAGCAGCCGTCCGTTACGGACGAACAGGT
AGCATAACAGGTGTCCGTACTAGCTGATCCCGGCGAAGCTGACATGACGG
CCGACGTCAACTTTGGGTTGTTGAGGCGTATCGTGGCCGGGGTGAAGGGG
GCTCAGCCACATGGGCCCGTGGGACAGGGACAGTTCCTACGGGAAATGGG
CATCGGGGCAAGGCTCACTGCGTTGGCGGAGCAGCCGTCCGTTACGGACG
AACAGGTAGCATAA
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