mRNA_H-elongata_contig189560.5214.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig189560.5214.1
Unique NamemRNA_H-elongata_contig189560.5214.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig189560.5214.1 vs. uniprot
Match: A0A6H5L6Y9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y9_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.100e-10
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    1 MIATLDGVHKISPQAIVDVVVFTEGRWGGLVDEVGVPVEWNIQDEIYDHFALHCTQ 168
            M A+L  +    P A VDV +F+EG+WGG+VDE+G+P+ W++  E  D   LHCTQ
Sbjct:  229 MEASLHSIAVAEPGAHVDVAIFSEGQWGGMVDEMGLPLYWDVAGETCDDLGLHCTQ 284
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BLAST of mRNA_H-elongata_contig189560.5214.1 vs. uniprot
Match: D7FHD0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD0_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 2.670e-10
Identity = 26/56 (46.43%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    1 MIATLDGVHKISPQAIVDVVVFTEGRWGGLVDEVGVPVEWNIQDEIYDHFALHCTQ 168
            M A+L  +    P A VDV +F+EG+WGG+VDE+G+P+ W++  E  D   LHC+Q
Sbjct:  124 MEASLHSIAVAEPGAHVDVAIFSEGQWGGMVDEMGLPLYWDVAGETCDDLGLHCSQ 179
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig189560.5214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6Y9_9PHAE1.100e-1048.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHD0_ECTSI2.670e-1046.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig189560contigH-elongata_contig189560:584..769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930083.4648747-CDS-H-elongata_contig189560:583..7691622930083.4648747-CDS-H-elongata_contig189560:583..769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189560 584..769 +
1691679274.3835797-CDS-H-elongata_contig189560:583..7691691679274.3835797-CDS-H-elongata_contig189560:583..769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189560 584..769 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig189560.5214.1prot_H-elongata_contig189560.5214.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig189560 584..769 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig189560.5214.1

>prot_H-elongata_contig189560.5214.1 ID=prot_H-elongata_contig189560.5214.1|Name=mRNA_H-elongata_contig189560.5214.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
MIATLDGVHKISPQAIVDVVVFTEGRWGGLVDEVGVPVEWNIQDEIYDHF
ALHCTQVTSKH*
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mRNA from alignment at H-elongata_contig189560:584..769+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig189560.5214.1 ID=mRNA_H-elongata_contig189560.5214.1|Name=mRNA_H-elongata_contig189560.5214.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=186bp|location=Sequence derived from alignment at H-elongata_contig189560:584..769+ (Himanthalia elongata Himel1 dioecious)
ATGATAGCTACCCTGGACGGCGTCCATAAGATCTCTCCCCAGGCCATCGT
TGACGTGGTGGTCTTCACGGAGGGTCGCTGGGGAGGCCTGGTGGACGAAG
TCGGGGTGCCTGTCGAATGGAACATTCAGGACGAGATCTACGACCATTTT
GCGCTTCACTGCACTCAGGTGACCAGCAAACACTAA
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Coding sequence (CDS) from alignment at H-elongata_contig189560:584..769+

>mRNA_H-elongata_contig189560.5214.1 ID=mRNA_H-elongata_contig189560.5214.1|Name=mRNA_H-elongata_contig189560.5214.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig189560:584..769+ (Himanthalia elongata Himel1 dioecious)
ATGATAGCTACCCTGGACGGCGTCCATAAGATCTCTCCCCAGGCCATCGT
TGACGTGGTGGTCTTCACGGAGGGTCGCTGGGGAGGCCTGGTGGACGAAG
TCGGGGTGCCTGTCGAATGGAACATTCAGGACGAGATCTACGACCATTTT
GCGCTTCACTGCACTCAGGTGACCAGCAAACACTAAATGATAGCTACCCT
GGACGGCGTCCATAAGATCTCTCCCCAGGCCATCGTTGACGTGGTGGTCT
TCACGGAGGGTCGCTGGGGAGGCCTGGTGGACGAAGTCGGGGTGCCTGTC
GAATGGAACATTCAGGACGAGATCTACGACCATTTTGCGCTTCACTGCAC
TCAGGTGACCAGCAAACACTAA
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