prot_H-elongata_contig189523.5213.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig189523.5213.1
Unique Nameprot_H-elongata_contig189523.5213.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length187
Homology
BLAST of mRNA_H-elongata_contig189523.5213.1 vs. uniprot
Match: A0A6H5L1J4_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1J4_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 9.190e-55
Identity = 103/201 (51.24%), Postives = 132/201 (65.67%), Query Frame = 0
Query:    1 MASDVATLPDPRIARAVSHKRRAALWSVVVTNERVIQEFRRSGLHRGPLNFLPIRTLQANHVALSAAAT-----------GGAGAGGIDRGGRE----MLPMAPETPAPAGFLGYVVRLIRLRPEHEHLRWAFFFAVFKDMMVFESAAQAEVVRARTHGGHIFYCSLDHVGTDHDPLVLEWEQAFPHIGHWGFRPLQGKTG 186
            + SD+ T+PDPRIARA+S+KRRAAL +VVV N++V+ +FRR GL+ GP+NFLP+ TL  ++    A              G   AG  D  GRE    +LP APE+PAPAGFLGY VRL+RLRPEHE LRW   FA+F+D+ VFE+  QAEVVRAR     +FYC+LDH G   +P  +   ++ PHI HWGF  L   +G
Sbjct:  226 LLSDLVTVPDPRIARALSYKRRAALSTVVVDNDKVLFDFRRRGLYTGPVNFLPLSTLVVDNPTPLAPLLLPLLLPPPRRIGNVPAGTEDGDGREEGADLLPRAPESPAPAGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQAEVVRARVPDRRLFYCALDHPGAQDEPCPIGG-RSMPHISHWGFHGLLADSG 425          
BLAST of mRNA_H-elongata_contig189523.5213.1 vs. uniprot
Match: D8LKK0_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKK0_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 2.260e-43
Identity = 88/183 (48.09%), Postives = 113/183 (61.75%), Query Frame = 0
Query:   19 HKRRAALWSVVVTNERVIQEFRRSGLHRGPLNFLPIRTLQANHVALSAAAT-----------GGAGAGGIDRGGRE----MLPMAPETPAPAGFLGYVVRLIRLRPEHEHLRWAFFFAVFKDMMVFESAAQAEVVRARTHGGHIFYCSLDHVGTDHDPLVLEWEQAFPHIGHWGFRPLQGKTG 186
            H+RRAAL +VVV N++V+ +FRR G + GP+NFLP+ TL  ++    A              G   AG  D  GRE    +LP APE+PAPAGFLGY VRL+RLRPEHE LRW   FA+F+D+ VFE+  QAE VRAR     +FYC+LDH G   +P      ++ PHI HWGF  +   +G
Sbjct:  147 HQRRAALSTVVVDNDKVLFDFRRRGFYTGPVNFLPLSTLVMDNPTPLAPLLLPLLLPPQRRIGIVPAGTEDGDGREEGANLLPRAPESPAPAGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQAEAVRARVPDRRLFYCALDHPGAQDEPCP-PGGRSLPHISHWGFHGVLADSG 328          
BLAST of mRNA_H-elongata_contig189523.5213.1 vs. uniprot
Match: D8LKJ2_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ2_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 3.710e-42
Identity = 97/211 (45.97%), Postives = 120/211 (56.87%), Query Frame = 0
Query:    1 MASDVATLPDPRIARAVSHKRRAALWSVVVTNERVIQEFRRSGLHRGPLNFLPIRTLQ--------------ANHVALSAAATGGAG-----AGGIDR---GGREMLPMAPETPAPAGFLGYVVRLIRLRPEHEHLRWAFFFAVFKDMMVFESAAQAEVVRARTHGGHIFYCSLDHV-GTDH-DPLVLEWEQAFPHIGHWGFRPLQGKTGG 187
            + SD+ T+PDPRIARA+S K R  L  VVV N+ V    RRSGL+   + FL +  L+              +N  A  A A+   G      GG       G  +LP+APETPAPAGFLGY VRL++LRP HE LRW    AVFKD+ VFE++ QAEVVRAR     +FYC+LD   G  H  P  L   +  PHI HWGF+   G+ GG
Sbjct:  326 LLSDLVTVPDPRIARALSFKCRFVLSRVVVVNDNVSSSIRRSGLYTERVEFLSLSALRQESPSVLPRPPPTVSNDTAAVATASRSGGRRTDNGGGCREEVEAGANLLPLAPETPAPAGFLGYAVRLLQLRPGHESLRWTVLLAVFKDLAVFETSEQAEVVRARMANQRLFYCALDRPRGQGHPSPAAL---RVLPHISHWGFQQAPGRVGG 533          
BLAST of mRNA_H-elongata_contig189523.5213.1 vs. uniprot
Match: A0A6H5KB01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB01_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 3.440e-30
Identity = 61/109 (55.96%), Postives = 73/109 (66.97%), Query Frame = 0
Query:   81 GREMLPMAPETPAPAGFLGYVVRLIRLRPEHEHLRWAFFFAVFKDMMVFESAAQAEVVRARTHGGHIFYCSLDHV-GTDH-DPLVLEWEQAFPHIGHWGFRPLQGKTGG 187
            G  +LP+APETPAPAGFLGY VRL++LRP HE LRW    AVFKD+ VF+++ QAEVVRAR      FYC+LD   G  H  P VL   +  PHI HWGF+    + GG
Sbjct:   16 GANLLPLAPETPAPAGFLGYAVRLLQLRPGHESLRWTVLLAVFKDLAVFKTSEQAEVVRARMANQRRFYCALDRPRGQGHPSPAVL---RVLPHISHWGFQQAPVRVGG 121          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig189523.5213.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L1J4_9PHAE9.190e-5551.24F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LKK0_ECTSI2.260e-4348.09F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LKJ2_ECTSI3.710e-4245.97F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KB01_9PHAE3.440e-3055.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig189523contigH-elongata_contig189523:54..614 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig189523.5213.1mRNA_H-elongata_contig189523.5213.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig189523 54..635 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig189523.5213.1 ID=prot_H-elongata_contig189523.5213.1|Name=mRNA_H-elongata_contig189523.5213.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=187bp
MASDVATLPDPRIARAVSHKRRAALWSVVVTNERVIQEFRRSGLHRGPLN
FLPIRTLQANHVALSAAATGGAGAGGIDRGGREMLPMAPETPAPAGFLGY
VVRLIRLRPEHEHLRWAFFFAVFKDMMVFESAAQAEVVRARTHGGHIFYC
SLDHVGTDHDPLVLEWEQAFPHIGHWGFRPLQGKTGG
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