mRNA_H-elongata_contig189479.5208.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig189479.5208.1
Unique NamemRNA_H-elongata_contig189479.5208.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig189479.5208.1 vs. uniprot
Match: D7FWE1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE1_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 7.330e-16
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 MGNSQGSEETGKCGYRVLGVQPNSPGSKVGLVSFFDFIVAVNG 129
            MGNSQG+ + GKCGYRVLGVQPNSP SKVGLVSFFDFIVA +G
Sbjct:    1 MGNSQGAAQLGKCGYRVLGVQPNSPASKVGLVSFFDFIVAADG 43
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BLAST of mRNA_H-elongata_contig189479.5208.1 vs. uniprot
Match: A0A812RJH1_SYMMI (Gorasp2 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RJH1_SYMMI)

HSP 1 Score: 63.5 bits (153), Expect = 4.530e-11
Identity = 31/42 (73.81%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 MGNSQGSEETGKCGYRVLGVQPNSPGSKVGLVSFFDFIVAVN 126
            MGNS   EE    GYRVLGVQPNSP S  GLVSFFDFIVA N
Sbjct:    1 MGNSSSKEEQDSVGYRVLGVQPNSPASNCGLVSFFDFIVAAN 42
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BLAST of mRNA_H-elongata_contig189479.5208.1 vs. uniprot
Match: A0A7S2CUT3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CUT3_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 7.460e-10
Identity = 29/43 (67.44%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 MGNSQGSEETGKCGYRVLGVQPNSPGSKVGLVSFFDFIVAVNG 129
            MG S   EE    GYRVLGVQPNSP S  GLVSFFDF+VA +G
Sbjct:    1 MGQSVSQEEVEAVGYRVLGVQPNSPASTAGLVSFFDFVVAADG 43
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BLAST of mRNA_H-elongata_contig189479.5208.1 vs. uniprot
Match: A0A7S2WEH5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WEH5_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.400e-9
Identity = 28/42 (66.67%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 MGNSQGSEETGKCGYRVLGVQPNSPGSKVGLVSFFDFIVAVN 126
            MG +   EE    GYRVLGVQPNSP S  GLVSFFDF+VA N
Sbjct:    1 MGQTMSQEEADSVGYRVLGVQPNSPASSAGLVSFFDFVVAAN 42
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BLAST of mRNA_H-elongata_contig189479.5208.1 vs. uniprot
Match: A0A7S2Y0B4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0B4_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.500e-9
Identity = 31/43 (72.09%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 MGNSQGSEETGKCGYRVLGVQPNSPGSKVGLVSFFDFIVAVNG 129
            MG     EE    GYRVLGVQ  SP SKVGLVSFFDFIVAVNG
Sbjct:    1 MGGGPSIEEIESVGYRVLGVQSQSPASKVGLVSFFDFIVAVNG 43
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BLAST of mRNA_H-elongata_contig189479.5208.1 vs. uniprot
Match: A0A835YI02_9STRA (GRASP55/65 PDZ-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI02_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.060e-9
Identity = 32/45 (71.11%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 MGNSQGSE--ETGKCGYRVLGVQPNSPGSKVGLVSFFDFIVAVNG 129
            MGN+   E  E+   GYRVLGVQPNSP S VGLVSFFDFIVA NG
Sbjct:    1 MGNTASDEGDESTCVGYRVLGVQPNSPASAVGLVSFFDFIVAANG 45
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BLAST of mRNA_H-elongata_contig189479.5208.1 vs. uniprot
Match: A0A7S3ZJU3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZJU3_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 6.760e-9
Identity = 28/43 (65.12%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    1 MGNSQGSEETGKCGYRVLGVQPNSPGSKVGLVSFFDFIVAVNG 129
            MG     EE    GYRVLGVQP SP S VGLVSFFDF+VA +G
Sbjct:    1 MGQGASQEEADATGYRVLGVQPGSPASAVGLVSFFDFVVACDG 43
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BLAST of mRNA_H-elongata_contig189479.5208.1 vs. uniprot
Match: F0YJB4_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJB4_AURAN)

HSP 1 Score: 56.6 bits (135), Expect = 1.660e-8
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:   40 GYRVLGVQPNSPGSKVGLVSFFDFIVAVNG 129
            GYRVLGVQPNSP S VGLVSFFDF+VAV+G
Sbjct:    2 GYRVLGVQPNSPASDVGLVSFFDFVVAVDG 31
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BLAST of mRNA_H-elongata_contig189479.5208.1 vs. uniprot
Match: A0A6S8RPB4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8RPB4_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.270e-7
Identity = 30/48 (62.50%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    1 MGN--SQGSEETGKC---GYRVLGVQPNSPGSKVGLVSFFDFIVAVNG 129
            MGN  SQ   +   C   GYRVLGVQP+SP S+ GLVSFFDF+V VNG
Sbjct:    1 MGNAPSQDDHQYDGCTTLGYRVLGVQPDSPASRAGLVSFFDFLVGVNG 48
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BLAST of mRNA_H-elongata_contig189479.5208.1 vs. uniprot
Match: A0A7S3USI3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USI3_HETAK)

HSP 1 Score: 53.9 bits (128), Expect = 2.750e-7
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    1 MGNSQGSEETGKC-------GYRVLGVQPNSPGSKVGLVSFFDFIVAVNG 129
            MGNSQGS +T          GYR+LG  PNSP S++GLV FFD+IVA +G
Sbjct:    1 MGNSQGSPDTAGTDDPENVVGYRILGSLPNSPASEMGLVHFFDYIVAADG 50
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig189479.5208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWE1_ECTSI7.330e-1683.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A812RJH1_SYMMI4.530e-1173.81Gorasp2 protein (Fragment) n=1 Tax=Symbiodinium mi... [more]
A0A7S2CUT3_9STRA7.460e-1067.44Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2WEH5_9STRA1.400e-966.67Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2Y0B4_9STRA1.500e-972.09Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A835YI02_9STRA2.060e-971.11GRASP55/65 PDZ-like domain-containing protein n=1 ... [more]
A0A7S3ZJU3_9STRA6.760e-965.12Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0YJB4_AURAN1.660e-886.67Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A6S8RPB4_9STRA1.270e-762.50Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S3USI3_HETAK2.750e-756.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig189479contigH-elongata_contig189479:798..926 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue2.4e-12
Seed eggNOG ortholog2880.D7FWE1
Preferred nameGORASP1
GOsGO:0000139,GO:0002009,GO:0002165,GO:0002790,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005793,GO:0005794,GO:0005795,GO:0005797,GO:0005798,GO:0005801,GO:0005829,GO:0005886,GO:0006464,GO:0006486,GO:0006487,GO:0006807,GO:0006810,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007030,GO:0007275,GO:0007399,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009306,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009893,GO:0009987,GO:0010256,GO:0010604,GO:0010721,GO:0010769,GO:0010771,GO:0010975,GO:0010977,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016333,GO:0019222,GO:0019538,GO:0022008,GO:0022603,GO:0022604,GO:0022607,GO:0030154,GO:0031090,GO:0031323,GO:0031325,GO:0031344,GO:0031345,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032940,GO:0033036,GO:0033116,GO:0034645,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0036211,GO:0042886,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044719,GO:0045184,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046903,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048814,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050773,GO:0050774,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051093,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051960,GO:0051961,GO:0060255,GO:0060284,GO:0060429,GO:0060562,GO:0061024,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070085,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0090066,GO:0090114,GO:0097708,GO:0098588,GO:0098791,GO:0120035,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903320,GO:1903322,GO:1904666,GO:1904668,GO:2000026,GO:2000171
EggNOG free text desc.Golgi organization
EggNOG OGsCOG5233@1,KOG3834@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size129
Cds size129
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930082.6412072-CDS-H-elongata_contig189479:797..9261622930082.6412072-CDS-H-elongata_contig189479:797..926Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189479 798..926 -
1691679274.026856-CDS-H-elongata_contig189479:797..9261691679274.026856-CDS-H-elongata_contig189479:797..926Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189479 798..926 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig189479.5208.1prot_H-elongata_contig189479.5208.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig189479 798..926 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig189479.5208.1

>prot_H-elongata_contig189479.5208.1 ID=prot_H-elongata_contig189479.5208.1|Name=mRNA_H-elongata_contig189479.5208.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=43bp
MGNSQGSEETGKCGYRVLGVQPNSPGSKVGLVSFFDFIVAVNG
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mRNA from alignment at H-elongata_contig189479:798..926-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig189479.5208.1 ID=mRNA_H-elongata_contig189479.5208.1|Name=mRNA_H-elongata_contig189479.5208.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=129bp|location=Sequence derived from alignment at H-elongata_contig189479:798..926- (Himanthalia elongata Himel1 dioecious)
ATGGGAAATTCACAGGGATCGGAGGAAACGGGGAAGTGCGGGTACCGCGT
GCTTGGAGTCCAGCCGAACTCGCCGGGCTCGAAAGTTGGCCTCGTCTCTT
TCTTTGACTTTATCGTTGCTGTGAATGGT
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Coding sequence (CDS) from alignment at H-elongata_contig189479:798..926-

>mRNA_H-elongata_contig189479.5208.1 ID=mRNA_H-elongata_contig189479.5208.1|Name=mRNA_H-elongata_contig189479.5208.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at H-elongata_contig189479:798..926- (Himanthalia elongata Himel1 dioecious)
ATGGGAAATTCACAGGGATCGGAGGAAACGGGGAAGTGCGGGTACCGCGT
GCTTGGAGTCCAGCCGAACTCGCCGGGCTCGAAAGTTGGCCTCGTCTCTT
TCTTTGACTTTATCGTTGCTGTGAATGGTATGGGAAATTCACAGGGATCG
GAGGAAACGGGGAAGTGCGGGTACCGCGTGCTTGGAGTCCAGCCGAACTC
GCCGGGCTCGAAAGTTGGCCTCGTCTCTTTCTTTGACTTTATCGTTGCTG
TGAATGGT
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