mRNA_H-elongata_contig189464.5206.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig189464.5206.1
Unique NamemRNA_H-elongata_contig189464.5206.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig189464.5206.1 vs. uniprot
Match: UPI001AA1AADC (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1AADC)

HSP 1 Score: 60.1 bits (144), Expect = 3.360e-9
Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:   19 RVLEITRCESMETMVRTKRLLWAGTLTRMSGGRLPKRIAFGNFEGVVRRGRGGKEKEWTDCVQSNIR 219
            + L++TRCES+ET +R +RL +AG + R S  RLP R+ FG   G      GG+ K W  CV  ++R
Sbjct:   18 KALKMTRCESIETTIRKRRLFFAGGVARQSKDRLPSRVMFGTIAGGENPRPGGQVKTWHRCVVEDLR 84
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BLAST of mRNA_H-elongata_contig189464.5206.1 vs. uniprot
Match: UPI001AA1A1FE (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1A1FE)

HSP 1 Score: 58.9 bits (141), Expect = 7.620e-9
Identity = 28/69 (40.58%), Postives = 39/69 (56.52%), Query Frame = 1 
Query:   19 RVLEITRCESMETMVRTKRLLWAGTLTRMSGGRLPKRIAFGNFEGVVRRGRGGKEKEWTDCVQSNIRAL 225
            + L ITRCES+ET +R +RL +AG + R   GRLP R+ FG   G      GG+ K W   +  ++R  
Sbjct:   56 KALRITRCESIETTIRKRRLFFAGAVVRQHEGRLPSRLMFGTIAGGGSPKPGGQPKTWPRAIAEDLRVF 124
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BLAST of mRNA_H-elongata_contig189464.5206.1 vs. uniprot
Match: A0A3M7QKL5_BRAPC (Uncharacterized protein n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7QKL5_BRAPC)

HSP 1 Score: 55.8 bits (133), Expect = 1.340e-7
Identity = 29/66 (43.94%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:   34 TRCESMETMVRTKRLLWAGTLTRMSGGRLPKRIAFGNFEGVVRRGRGGKEKEWTDCVQSNIRALGI 231
            T+  S++ +VRT RL WAG + RM   RLPK + FG+     +RG G  E+EWTDC++ +    GI
Sbjct:  113 TKTVSLDKIVRTIRLRWAGHIRRMLDTRLPKIVLFGDVLSG-KRGMGRSEREWTDCLKKDCERAGI 177
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BLAST of mRNA_H-elongata_contig189464.5206.1 vs. uniprot
Match: A0A6H5KN66_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN66_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.560e-7
Identity = 25/60 (41.67%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:   40 CESMETMVRTKRLLWAGTLTRMSGGRLPKRIAFGNFEGVVRRGRGGKEKEWTDCVQSNIR 219
            C+S+E+ +R +RLL+AG L R   GRLPKR+  G   G    GRG  E+ W  C++ +++
Sbjct:  753 CQSVESTIRQRRLLFAGALARQPDGRLPKRLMLGELVGGEGSGRGKPEQNWQMCLKDDLK 812
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BLAST of mRNA_H-elongata_contig189464.5206.1 vs. uniprot
Match: H2ZTC0_LATCH (Uncharacterized protein n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=H2ZTC0_LATCH)

HSP 1 Score: 49.3 bits (116), Expect = 2.990e-5
Identity = 26/73 (35.62%), Postives = 42/73 (57.53%), Query Frame = 1 
Query:   13 NNRVLEITRCESMETMVRTKRLLWAGTLTRMSGGRLPKRIAFGNFEGVVRRGRGGKEKEWTDCVQSNIRALGI 231
            NN++LE T  +SM+T +  +RL W G + RM   RLPK + +G  +   RR RG  +  ++D V+  ++   I
Sbjct:   82 NNKILERTGLQSMQTNLDVRRLRWLGHVERMPQARLPKAVLYGQLKNRPRR-RGRPKLRYSDKVKQGLKKFSI 153
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BLAST of mRNA_H-elongata_contig189464.5206.1 vs. uniprot
Match: C3YW91_BRAFL (Uncharacterized protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3YW91_BRAFL)

HSP 1 Score: 48.5 bits (114), Expect = 5.450e-5
Identity = 26/73 (35.62%), Postives = 41/73 (56.16%), Query Frame = 1 
Query:   13 NNRVLEITRCESMETMVRTKRLLWAGTLTRMSGGRLPKRIAFGNFEGVVRRGRGGKEKEWTDCVQSNIRALGI 231
            NN VL+     S+E M+ +++L WAG L RM   R+PK + +G    + +R RG   K + D ++  +R  GI
Sbjct:   11 NNEVLKRANICSIEAMLMSRQLRWAGHLARMEDTRMPKAVFYGELC-LGKRARGAPRKRYKDQLKQQLRVAGI 82
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig189464.5206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
UPI001AA1AADC3.360e-943.28hypothetical protein n=1 Tax=Vibrio parahaemolytic... [more]
UPI001AA1A1FE7.620e-940.58hypothetical protein n=1 Tax=Vibrio parahaemolytic... [more]
A0A3M7QKL5_BRAPC1.340e-743.94Uncharacterized protein n=1 Tax=Brachionus plicati... [more]
A0A6H5KN66_9PHAE1.560e-741.67Reverse transcriptase domain-containing protein n=... [more]
H2ZTC0_LATCH2.990e-535.62Uncharacterized protein n=1 Tax=Latimeria chalumna... [more]
C3YW91_BRAFL5.450e-535.62Uncharacterized protein n=1 Tax=Branchiostoma flor... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig189464contigH-elongata_contig189464:347..577 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size231
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930082.4256864-CDS-H-elongata_contig189464:346..5771622930082.4256864-CDS-H-elongata_contig189464:346..577Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189464 347..577 -
1691679273.952918-CDS-H-elongata_contig189464:346..5771691679273.952918-CDS-H-elongata_contig189464:346..577Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189464 347..577 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig189464.5206.1prot_H-elongata_contig189464.5206.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig189464 347..577 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig189464.5206.1

>prot_H-elongata_contig189464.5206.1 ID=prot_H-elongata_contig189464.5206.1|Name=mRNA_H-elongata_contig189464.5206.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
MTSYNNRVLEITRCESMETMVRTKRLLWAGTLTRMSGGRLPKRIAFGNFE
GVVRRGRGGKEKEWTDCVQSNIRALGI
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mRNA from alignment at H-elongata_contig189464:347..577-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig189464.5206.1 ID=mRNA_H-elongata_contig189464.5206.1|Name=mRNA_H-elongata_contig189464.5206.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig189464:347..577- (Himanthalia elongata Himel1 dioecious)
ATGACCTCGTACAACAACCGTGTCCTTGAGATAACCCGGTGCGAAAGCAT
GGAAACAATGGTGCGCACGAAAAGACTTTTGTGGGCGGGAACGCTCACCC
GAATGAGCGGCGGGCGGCTGCCAAAGCGAATCGCCTTCGGAAACTTTGAG
GGTGTAGTACGGAGAGGACGGGGTGGGAAGGAGAAAGAGTGGACCGATTG
TGTACAGAGTAATATCCGGGCGTTAGGCATT
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Coding sequence (CDS) from alignment at H-elongata_contig189464:347..577-

>mRNA_H-elongata_contig189464.5206.1 ID=mRNA_H-elongata_contig189464.5206.1|Name=mRNA_H-elongata_contig189464.5206.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig189464:347..577- (Himanthalia elongata Himel1 dioecious)
ATGACCTCGTACAACAACCGTGTCCTTGAGATAACCCGGTGCGAAAGCAT
GGAAACAATGGTGCGCACGAAAAGACTTTTGTGGGCGGGAACGCTCACCC
GAATGAGCGGCGGGCGGCTGCCAAAGCGAATCGCCTTCGGAAACTTTGAG
GGTGTAGTACGGAGAGGACGGGGTGGGAAGGAGAAAGAGTGGACCGATTG
TGTACAGAGTAATATCCGGGCGTTAGGCATTATGACCTCGTACAACAACC
GTGTCCTTGAGATAACCCGGTGCGAAAGCATGGAAACAATGGTGCGCACG
AAAAGACTTTTGTGGGCGGGAACGCTCACCCGAATGAGCGGCGGGCGGCT
GCCAAAGCGAATCGCCTTCGGAAACTTTGAGGGTGTAGTACGGAGAGGAC
GGGGTGGGAAGGAGAAAGAGTGGACCGATTGTGTACAGAGTAATATCCGG
GCGTTAGGCATT
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