prot_H-elongata_contig189424.5203.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig189424.5203.1
Unique Nameprot_H-elongata_contig189424.5203.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length60
Homology
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BLAST of mRNA_H-elongata_contig189424.5203.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 5.450e-16
Identity = 38/59 (64.41%), Postives = 50/59 (84.75%), Query Frame = 0 
Query:    1 PHLALLACLYHGVGATSCQAERNFFSLSFLIGTLRASMSPFKVEQIMFLKLNQGCPQEV 59
            PHLAL+A L+HG+ +TSCQAERNF +L+FLIG+LR+SM P KVE++MFL+LN+    EV
Sbjct:  412 PHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEV 470
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BLAST of mRNA_H-elongata_contig189424.5203.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 5.590e-16
Identity = 38/59 (64.41%), Postives = 50/59 (84.75%), Query Frame = 0 
Query:    1 PHLALLACLYHGVGATSCQAERNFFSLSFLIGTLRASMSPFKVEQIMFLKLNQGCPQEV 59
            PHLAL+A L+HG+ +TSCQAERNF +L+FLIG+LR+SM P KVE++MFL+LN+    EV
Sbjct:  740 PHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEV 798
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig189424.5203.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAN7_9PHAE5.450e-1664.41Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE5.590e-1664.41Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..59
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.475
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 1..52

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig189424contigH-elongata_contig189424:1018..1197 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig189424.5203.1mRNA_H-elongata_contig189424.5203.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig189424 1018..1197 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig189424.5203.1 ID=prot_H-elongata_contig189424.5203.1|Name=mRNA_H-elongata_contig189424.5203.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
PHLALLACLYHGVGATSCQAERNFFSLSFLIGTLRASMSPFKVEQIMFLK
LNQGCPQEV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf