mRNA_H-elongata_contig189424.5202.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig189424.5202.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE) HSP 1 Score: 122 bits (305), Expect = 5.470e-29 Identity = 66/158 (41.77%), Postives = 94/158 (59.49%), Query Frame = 1
Query: 4 VKYFTRNSKDKRRLTSHDWNVTNQVCSILDPITEVNIKI*GAEDTYISKVTFPMKELMEIMNS*CLQIRVPDKPGMDPVIRTSKTNLSFFLEVETAV-EVYREVMEEKELGRALNPIKRISVFLDPRRKMMSEIDCIGGGNALQTMAISDVEELGHYF 474
V+YF N + R+L+S +W VTN+VCS+LD + EV +KI GA DT+IS+ F M+E+ EI + +IRVPD+P D + K + + V EV ME+KELG A P++RI LDPRRK S+ + G L+ AI+DV+ + F
Sbjct: 140 VEYFRDNENNNRKLSSREWTVTNEVCSLLDVVAEVTVKIQGATDTHISQTMFNMREIREIFSGDVYKIRVPDQPYNDDSVLKEKIQVDDLMTETCKVREVVLSRMEKKELGAARMPLERICALLDPRRKDCSDEHLVNGSADLKASAIADVKSVAKTF 297
BLAST of mRNA_H-elongata_contig189424.5202.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE) HSP 1 Score: 122 bits (305), Expect = 1.390e-28 Identity = 66/158 (41.77%), Postives = 94/158 (59.49%), Query Frame = 1
Query: 4 VKYFTRNSKDKRRLTSHDWNVTNQVCSILDPITEVNIKI*GAEDTYISKVTFPMKELMEIMNS*CLQIRVPDKPGMDPVIRTSKTNLSFFLEVETAV-EVYREVMEEKELGRALNPIKRISVFLDPRRKMMSEIDCIGGGNALQTMAISDVEELGHYF 474
V+YF N + R+L+S +W VTN+VCS+LD + EV +KI GA DT+IS+ F M+E+ EI + +IRVPD+P D + K + + V EV ME+KELG A P++RI LDPRRK S+ + G L+ AI+DV+ + F
Sbjct: 468 VEYFRDNENNNRKLSSREWTVTNEVCSLLDVVAEVTVKIQGATDTHISQTMFNMREIREIFSGDVYKIRVPDQPYNDDSVLKEKIQVDDLMTETCKVREVVLSRMEKKELGAARMPLERICALLDPRRKDCSDEHLVNGSADLKASAIADVKSVAKTF 625
BLAST of mRNA_H-elongata_contig189424.5202.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE) HSP 1 Score: 106 bits (264), Expect = 3.950e-23 Identity = 60/168 (35.71%), Postives = 103/168 (61.31%), Query Frame = 1
Query: 16 TRNSKDKRRLTSHDWNVTNQVCSILDPITEVNIKI*GAEDTYISKVTFPMKELMEIMNS*CLQIRV--------PDKPGMDPV------------IRTSKTNLS-FFLEVETAVEVYREVMEEKELGRALNPIKRISVFLDPRRKMMSEIDCIGGGNALQTMAISDVE 456
++N + KR+LT+H+W VTN+VCS+L+ ++EV I++ GA DT++S+ TF + E+++++ + IRV P G+ P I T++T ++ LE + V+V EVM+EK +G+AL ++R+SV LDPRRK + + G + L+T A +D++
Sbjct: 296 SQNKQLKRKLTAHEWTVTNEVCSLLETVSEVTIRMQGATDTHLSQATFIINEVIDMLTTDYHPIRVESAIVTPPPPAAGIIPTEGEGQNESSLDGISTAETQVTDLTLEAQDVVQVLLEVMDEKGVGKALQWVERLSVLLDPRRKTLDDTHLRNGSSDLKTQAEADLK 463
BLAST of mRNA_H-elongata_contig189424.5202.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 7.560e-21 Identity = 53/147 (36.05%), Postives = 90/147 (61.22%), Query Frame = 1
Query: 16 TRNSKDKRRLTSHDWNVTNQVCSILDPITEVNIKI*GAEDTYISKVTFPMKELMEIMNS*CLQIRVPDKPGMDPVIRTSKTNLSFFLEVETAVEVYREVMEEKELGRALNPIKRISVFLDPRRKMMSEIDCIGGGNALQTMAISDVE 456
++N + KR+LT+H+W VTN+VCS+L+ ++EV I++ GA +T++S+ TF + E E N + +D + LE + V+V RE+M+EK +G+AL ++R+SV LDPRRK + + G + L+T A +D++
Sbjct: 296 SQNKQLKRKLTAHEWTVTNEVCSLLETVSEVTIRMQGATETHLSQATFIINE-GEGQN----------ESSLDGISTEETQVTGLTLEAQDVVQVLREMMDEKGVGKALQRVERLSVLLDPRRKTLDDTHLRNGSSDLKTQAEADLK 431
BLAST of mRNA_H-elongata_contig189424.5202.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 2.670e-19 Identity = 61/183 (33.33%), Postives = 94/183 (51.37%), Query Frame = 1
Query: 10 YFTR------NSKDKRRLTSHDWNVTNQVCSILDPITEVNIKI*GAEDTYISKVTFPMKELMEIMNS*CLQIRV------PDKPGMDPVIRTSKTNL--------------SFFLEVETAVEVYREVMEEKELGRALNPIKRISVFLDPRRKMMSEIDCIGGGNALQTMAISDVEELGHYFVA 480
YF R N + KR+L+SH+W VTN+VCS+L ++E+ I+I GA+DT+IS+ F + E+ME++ IR P P +D + + N E + +V EVMEEK +G+AL ++R+S LDPRRK + G L+ A +D+++ F A
Sbjct: 142 YFRRLPQIPSNKQLKRKLSSHEWIVTNEVCSLLGDVSEITIRIQGAQDTHISQAMFLIHEVMEMLKDETHPIRTANAIVTPPPPALDVIPTEEEENQPQKGGVSTEDIHVEDLTTEAQGVRKVLLEVMEEKGVGKALQRVERLSALLDPRRKDLDATQVGNGDEDLRIAAEADLKKFIATFTA 324
BLAST of mRNA_H-elongata_contig189424.5202.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 1.110e-18 Identity = 50/153 (32.68%), Postives = 86/153 (56.21%), Query Frame = 1
Query: 4 VKYFTRNSKDKRRLTSHDWNVTNQVCSILDPITEVNIKI*GAEDTYISKVTFPMKELMEIMNS*CLQIRVPD--KPGMDPVIRTSKTNLSFFLEVETAVEVYREVMEEKELGRALNPIKRISVFLDPRRKMMSEIDCIGGGNALQTMAISDVE 456
+YF + R+LT +W +TN+VCS+L ++EV I++ GA+DT+IS+ F + E+ME++ IR + +P V+ S + +EV +VMEEK++G+A+ ++R+S +DPRRK + G L+ A D++
Sbjct: 476 TEYFREQPHNSRKLTQPEWTITNEVCSLLSDVSEVTIRMQGAKDTHISQAMFIIHEVMEMLREDSHPIRAQNATEPEEMQVLELSSA-------AQGVLEVLLDVMEEKQVGKAVQQVERLSALMDPRRKSLDGAKLENGSATLRKKAEEDLK 621
BLAST of mRNA_H-elongata_contig189424.5202.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE) HSP 1 Score: 68.9 bits (167), Expect = 3.230e-10 Identity = 33/74 (44.59%), Postives = 49/74 (66.22%), Query Frame = 1
Query: 34 KRRLTSHDWNVTNQVCSILDPITEVNIKI*GAEDTYISKVTFPMKELMEIMNS*CLQIRV--------PDKPGM 231
KR+LT+H+W VTN+VCS+LD ++E I++ GA DT+IS+ TF + E+ME++ IRV P PG+
Sbjct: 295 KRKLTAHEWTVTNEVCSLLDTVSEATIRMQGAADTHISQATFIVHEVMEMLKEDSHPIRVENAMVTPPPQAPGL 368 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig189424.5202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig189424.5202.1 >prot_H-elongata_contig189424.5202.1 ID=prot_H-elongata_contig189424.5202.1|Name=mRNA_H-elongata_contig189424.5202.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp MDPVIRTSKTNLSFFLEVETAVEVYREVMEEKELGRALNPIKRISVFLDPback to top mRNA from alignment at H-elongata_contig189424:397..990+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig189424.5202.1 ID=mRNA_H-elongata_contig189424.5202.1|Name=mRNA_H-elongata_contig189424.5202.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=594bp|location=Sequence derived from alignment at H-elongata_contig189424:397..990+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig189424:397..990+ >mRNA_H-elongata_contig189424.5202.1 ID=mRNA_H-elongata_contig189424.5202.1|Name=mRNA_H-elongata_contig189424.5202.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig189424:397..990+ (Himanthalia elongata Himel1 dioecious)back to top |