mRNA_H-elongata_contig189422.5201.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig189422.5201.1
Unique NamemRNA_H-elongata_contig189422.5201.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig189422.5201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig189422contigH-elongata_contig189422:579..1147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons1
Model size569
Cds size381
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930081.909368-UTR-H-elongata_contig189422:578..7661622930081.909368-UTR-H-elongata_contig189422:578..766Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig189422 579..766 +
1691679273.7702572-UTR-H-elongata_contig189422:578..7661691679273.7702572-UTR-H-elongata_contig189422:578..766Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig189422 579..766 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930081.9224882-CDS-H-elongata_contig189422:766..11471622930081.9224882-CDS-H-elongata_contig189422:766..1147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189422 767..1147 +
1691679273.7792346-CDS-H-elongata_contig189422:766..11471691679273.7792346-CDS-H-elongata_contig189422:766..1147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189422 767..1147 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig189422.5201.1prot_H-elongata_contig189422.5201.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig189422 767..1147 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig189422.5201.1

>prot_H-elongata_contig189422.5201.1 ID=prot_H-elongata_contig189422.5201.1|Name=mRNA_H-elongata_contig189422.5201.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
MFAAAFHLPASATTFAITTFAVVDLTKAAARSRLFPPHTVGAIAAVAISS
PPPIYRACVLSGRTFFAPRSRNIRYMPTTIARWLGSHQRRPDRPYIFRNT
PNAAASPIGVRHLPLRQISLHSFAGSG
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mRNA from alignment at H-elongata_contig189422:579..1147+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig189422.5201.1 ID=mRNA_H-elongata_contig189422.5201.1|Name=mRNA_H-elongata_contig189422.5201.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=569bp|location=Sequence derived from alignment at H-elongata_contig189422:579..1147+ (Himanthalia elongata Himel1 dioecious)
GCGCCGTCTGCAGTCGTTCCAGGGCGCGGTAGCAGCGTGCTAGCGCCGTC
TAAGGCCGGGACAGTAATCATCCTGCTTGTTGAGGAGGTTGATCGTTTTC
TAGAAGCGACCAGGCTTCCCTGAGAAGAAACGTCGAAGGGTGTTCGATCA
GCGCTCACATCGCGCCAGGCATCGGCAGCCGCGCGGCGATGTTCGCGGCG
GCTTTCCACCTCCCCGCGAGCGCCACGACATTCGCGATTACCACTTTCGC
CGTGGTCGACTTGACGAAGGCAGCCGCGCGATCGCGTCTGTTCCCCCCCC
ACACCGTTGGAGCTATTGCTGCTGTCGCTATTTCCTCGCCGCCGCCGATA
TACCGCGCCTGCGTCCTCTCCGGGCGGACGTTCTTCGCACCGCGTTCGCG
AAATATACGCTACATGCCTACCACCATCGCTCGGTGGCTTGGCTCTCATC
AACGGCGCCCGGATCGCCCCTACATCTTCCGAAACACTCCTAACGCCGCG
GCTTCCCCCATTGGCGTACGCCATCTCCCACTCCGGCAAATCAGTTTGCA
TTCCTTCGCTGGCAGTGGA
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Coding sequence (CDS) from alignment at H-elongata_contig189422:579..1147+

>mRNA_H-elongata_contig189422.5201.1 ID=mRNA_H-elongata_contig189422.5201.1|Name=mRNA_H-elongata_contig189422.5201.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig189422:579..1147+ (Himanthalia elongata Himel1 dioecious)
ATGTTCGCGGCGGCTTTCCACCTCCCCGCGAGCGCCACGACATTCGCGAT
TACCACTTTCGCCGTGGTCGACTTGACGAAGGCAGCCGCGCGATCGCGTC
TGTTCCCCCCCCACACCGTTGGAGCTATTGCTGCTGTCGCTATTTCCTCG
CCGCCGCCGATATACCGCGCCTGCGTCCTCTCCGGGCGGACGTTCTTCGC
ACCGCGTTCGCGAAATATACGCTACATGCCTACCACCATCGCTCGGTGGC
TTGGCTCTCATCAACGGCGCCCGGATCGCCCCTACATCTTCCGAAACACT
CCTAACGCCGCGGCTTCCCCCATTGGCGTACGCCATCTCCCACTCCGGCA
AATCAGTTTGCATTCCTTCGCTGGCAGTGGAATGTTCGCGGCGGCTTTCC
ACCTCCCCGCGAGCGCCACGACATTCGCGATTACCACTTTCGCCGTGGTC
GACTTGACGAAGGCAGCCGCGCGATCGCGTCTGTTCCCCCCCCACACCGT
TGGAGCTATTGCTGCTGTCGCTATTTCCTCGCCGCCGCCGATATACCGCG
CCTGCGTCCTCTCCGGGCGGACGTTCTTCGCACCGCGTTCGCGAAATATA
CGCTACATGCCTACCACCATCGCTCGGTGGCTTGGCTCTCATCAACGGCG
CCCGGATCGCCCCTACATCTTCCGAAACACTCCTAACGCCGCGGCTTCCC
CCATTGGCGTACGCCATCTCCCACTCCGGCAAATCAGTTTGCATTCCTTC
GCTGGCAGTGGA
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