mRNA_H-elongata_contig100511.52.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100511.52.1
Unique NamemRNA_H-elongata_contig100511.52.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig100511.52.1 vs. uniprot
Match: D8LLR9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLR9_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 1.170e-16
Identity = 42/59 (71.19%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:   28 QEGDTSGSTGLVVLFDGHARDLLVANTGDSRCVAS-RAGVAVLLTNDHRLNRPDERQRV 201
            +EGDTSGST LVV+FDG +R +LVAN GDSRCVAS   GVA  L++DHRL+RPDER RV
Sbjct: 1697 KEGDTSGSTALVVVFDGRSRSILVANVGDSRCVASCGGGVAARLSSDHRLSRPDERARV 1755
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BLAST of mRNA_H-elongata_contig100511.52.1 vs. uniprot
Match: A0A6H5JFB6_9PHAE (Aurora kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFB6_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 7.610e-16
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:   28 QEGDTSGSTGLVVLFDGHARDLLVANTGDSRCVAS-RAGVAVLLTNDHRLNRPDERQRV 201
            QE DTSG+T LVV+FDG +R +LVAN GDSRCVAS   GVA  L++DHRL+RPDER RV
Sbjct: 1619 QEDDTSGATALVVVFDGRSRSILVANVGDSRCVASCGGGVATRLSSDHRLSRPDERARV 1677
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BLAST of mRNA_H-elongata_contig100511.52.1 vs. uniprot
Match: A0A7S1YQL3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YQL3_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.640e-12
Identity = 34/58 (58.62%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:   28 QEGDTSGSTGLVVLFDGHARDLLVANTGDSRCVASRAGVAVLLTNDHRLNRPDERQRV 201
            QE DTSGSTGL++L D     L VAN GDSRCV SR G A++LT DHR+    ER+R+
Sbjct:  308 QESDTSGSTGLIILLDSLNGKLTVANVGDSRCVLSRGGAAMVLTTDHRVTNNTERRRI 365
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BLAST of mRNA_H-elongata_contig100511.52.1 vs. uniprot
Match: A0A7S4T8E3_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T8E3_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.830e-12
Identity = 34/58 (58.62%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:   28 QEGDTSGSTGLVVLFDGHARDLLVANTGDSRCVASRAGVAVLLTNDHRLNRPDERQRV 201
            QE DTSGSTGL++L D     L VAN GDSRCV SR G A++LT DHR+    ER+R+
Sbjct:  456 QESDTSGSTGLIILLDSLNGKLTVANVGDSRCVLSRGGAAMVLTTDHRVTNNTERRRI 513
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BLAST of mRNA_H-elongata_contig100511.52.1 vs. uniprot
Match: A0A7S2BV78_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BV78_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 6.430e-12
Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:   16 KITPQEGDTSGSTGLVVLFDGHARDLLVANTGDSRCVASRAGVAVLLTNDHRLN-RPDERQRV 201
            ++  Q  D SGSTG++VLFDG    L+VAN GDSRCV SR G A+ L+++HRL  RPDER+RV
Sbjct:  757 QMVAQSEDESGSTGIMVLFDG--THLIVANVGDSRCVLSRGGHAIELSSEHRLTTRPDERKRV 817
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BLAST of mRNA_H-elongata_contig100511.52.1 vs. uniprot
Match: D7MRI6_ARALL (Protein-serine/threonine phosphatase n=2 Tax=Arabidopsis TaxID=3701 RepID=D7MRI6_ARALL)

HSP 1 Score: 58.9 bits (141), Expect = 1.540e-8
Identity = 35/72 (48.61%), Postives = 47/72 (65.28%), Query Frame = 1 
Query:    1 MCGGS----KITPQEGDTSGSTGLV-VLFDGHARDLLVANTGDSRCVASRAGVAVLLTNDHRLNRPDERQRV 201
            +CG S       P+E   SGST +V VL   H   ++VANTGDSR V  R+G+A+ L+NDH+ +RPDER R+
Sbjct:  211 VCGTSVPLCNCDPREAAISGSTAVVAVLTQDH---IVVANTGDSRAVLCRSGLAIPLSNDHKPDRPDERARI 279
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BLAST of mRNA_H-elongata_contig100511.52.1 vs. uniprot
Match: A0A565CQF7_9BRAS (Protein-serine/threonine phosphatase n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565CQF7_9BRAS)

HSP 1 Score: 58.2 bits (139), Expect = 2.880e-8
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:   25 PQEGDTSGSTGLV-VLFDGHARDLLVANTGDSRCVASRAGVAVLLTNDHRLNRPDERQRV 201
            P+E   SGST +  VL   H   ++VANTGDSR V  R+GVAV L+NDH+ +RPDER R+
Sbjct:  210 PREAAISGSTAVAAVLTQEH---IIVANTGDSRAVLCRSGVAVPLSNDHKPDRPDERARI 266
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BLAST of mRNA_H-elongata_contig100511.52.1 vs. uniprot
Match: UPI00063AFCFE (probable protein phosphatase 2C 8 n=1 Tax=Gossypium raimondii TaxID=29730 RepID=UPI00063AFCFE)

HSP 1 Score: 56.2 bits (134), Expect = 9.760e-8
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:    4 CGGSKITPQEGDTSGSTGLVVLFDGHARDLLVANTGDSRCVASRAGVAVLLTNDHRLNRPDERQRV 201
            CG +    +  +T GS  +V+L      +++VAN GDSR V  RAG AV L++DH+L+RPDE +RV
Sbjct:   60 CGTTAAVDEVMETMGSMAVVMLVS--REEVVVANCGDSRAVLCRAGTAVALSHDHKLDRPDEWERV 123
[Close]
BLAST of mRNA_H-elongata_contig100511.52.1 vs. uniprot
Match: A0A087GA83_ARAAL (Protein-serine/threonine phosphatase n=1 Tax=Arabis alpina TaxID=50452 RepID=A0A087GA83_ARAAL)

HSP 1 Score: 56.6 bits (135), Expect = 1.010e-7
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:   25 PQEGDTSGSTGLV-VLFDGHARDLLVANTGDSRCVASRAGVAVLLTNDHRLNRPDERQRV 201
            P+E   SGST +  VL   H   ++VANTGDSR V  R+GVA+ L+NDH+ +RPDER R+
Sbjct:  210 PREVAISGSTAVTAVLTQEH---IIVANTGDSRAVLCRSGVAIPLSNDHKPDRPDERARI 266
[Close]
BLAST of mRNA_H-elongata_contig100511.52.1 vs. uniprot
Match: P2C75_ARATH (Probable protein phosphatase 2C 75 n=8 Tax=Camelineae TaxID=980083 RepID=P2C75_ARATH)

HSP 1 Score: 56.2 bits (134), Expect = 1.380e-7
Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 1 
Query:    1 MCGGS----KITPQEGDTSGSTGLV-VLFDGHARDLLVANTGDSRCVASRAGVAVLLTNDHRLNRPDERQRV 201
            +CG S       P+E   SGST +  VL   H   ++VANTGDSR V  R G+A+ L+NDH+ +RPDER R+
Sbjct:  212 VCGTSVPLCNCDPREAAISGSTAVTAVLTHDH---IIVANTGDSRAVLCRNGMAIPLSNDHKPDRPDERARI 280
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100511.52.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLR9_ECTSI1.170e-1671.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFB6_9PHAE7.610e-1669.49Aurora kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A7S1YQL3_9STRA1.640e-1258.62Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4T8E3_9STRA1.830e-1258.62Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2BV78_9STRA6.430e-1258.73Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
D7MRI6_ARALL1.540e-848.61Protein-serine/threonine phosphatase n=2 Tax=Arabi... [more]
A0A565CQF7_9BRAS2.880e-855.00Protein-serine/threonine phosphatase n=1 Tax=Arabi... [more]
UPI00063AFCFE9.760e-845.45probable protein phosphatase 2C 8 n=1 Tax=Gossypiu... [more]
A0A087GA83_ARAAL1.010e-753.33Protein-serine/threonine phosphatase n=1 Tax=Arabi... [more]
P2C75_ARATH1.380e-747.22Probable protein phosphatase 2C 75 n=8 Tax=Camelin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100511contigH-elongata_contig100511:277..477 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue1.5e-13
Seed eggNOG ortholog2880.D8LLR9
Preferred namespnA
KEGG koko:K01090,ko:K07359,ko:K14803,ko:K17500
KEGG Pathwayko04140,ko04152,ko04211,ko04920,ko04921,ko05034,map04140,map04152,map04211,map04920,map04921,map05034
GOsGO:0000166,GO:0000287,GO:0001101,GO:0001726,GO:0001882,GO:0001883,GO:0002682,GO:0002697,GO:0002831,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0009414,GO:0009415,GO:0009628,GO:0009651,GO:0009653,GO:0009719,GO:0009725,GO:0009737,GO:0009889,GO:0009987,GO:0010033,GO:0010035,GO:0010468,GO:0010556,GO:0016020,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0017076,GO:0019001,GO:0019219,GO:0019222,GO:0019538,GO:0030145,GO:0030154,GO:0031252,GO:0031323,GO:0031326,GO:0031347,GO:0032101,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033554,GO:0033993,GO:0035639,GO:0036094,GO:0036211,GO:0042221,GO:0042578,GO:0042995,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043618,GO:0043620,GO:0043900,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0048583,GO:0048856,GO:0048869,GO:0050688,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0061392,GO:0061416,GO:0065007,GO:0071214,GO:0071470,GO:0071472,GO:0071704,GO:0080090,GO:0080134,GO:0097159,GO:0097305,GO:0097367,GO:0104004,GO:0120025,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901700,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.peptidyl-threonine phosphorylation
EggNOG OGsCOG0631@1,KOG0585@1,KOG0585@2759,KOG0698@2759
EC2.7.11.17,3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko01009,ko03009
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929547.16958-CDS-H-elongata_contig100511:276..4771622929547.16958-CDS-H-elongata_contig100511:276..477Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100511 277..477 -
1691679063.8815122-CDS-H-elongata_contig100511:276..4771691679063.8815122-CDS-H-elongata_contig100511:276..477Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100511 277..477 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100511.52.1prot_H-elongata_contig100511.52.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100511 277..477 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100511.52.1

>prot_H-elongata_contig100511.52.1 ID=prot_H-elongata_contig100511.52.1|Name=mRNA_H-elongata_contig100511.52.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
MCGGSKITPQEGDTSGSTGLVVLFDGHARDLLVANTGDSRCVASRAGVAV
LLTNDHRLNRPDERQRV
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mRNA from alignment at H-elongata_contig100511:277..477-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100511.52.1 ID=mRNA_H-elongata_contig100511.52.1|Name=mRNA_H-elongata_contig100511.52.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig100511:277..477- (Himanthalia elongata Himel1 dioecious)
ATGTGTGGTGGATCGAAAATAACCCCACAGGAAGGCGACACGAGTGGATC
GACGGGACTCGTGGTCCTATTTGACGGCCACGCGCGCGATCTGCTGGTCG
CGAACACTGGTGACTCTCGCTGCGTCGCCAGCAGGGCGGGTGTGGCGGTG
CTGTTGACCAACGACCATCGACTGAATCGTCCCGACGAGCGGCAGCGCGT
A
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Coding sequence (CDS) from alignment at H-elongata_contig100511:277..477-

>mRNA_H-elongata_contig100511.52.1 ID=mRNA_H-elongata_contig100511.52.1|Name=mRNA_H-elongata_contig100511.52.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig100511:277..477- (Himanthalia elongata Himel1 dioecious)
ATGTGTGGTGGATCGAAAATAACCCCACAGGAAGGCGACACGAGTGGATC
GACGGGACTCGTGGTCCTATTTGACGGCCACGCGCGCGATCTGCTGGTCG
CGAACACTGGTGACTCTCGCTGCGTCGCCAGCAGGGCGGGTGTGGCGGTG
CTGTTGACCAACGACCATCGACTGAATCGTCCCGACGAGCGGCAGCGCGT
AATGTGTGGTGGATCGAAAATAACCCCACAGGAAGGCGACACGAGTGGAT
CGACGGGACTCGTGGTCCTATTTGACGGCCACGCGCGCGATCTGCTGGTC
GCGAACACTGGTGACTCTCGCTGCGTCGCCAGCAGGGCGGGTGTGGCGGT
GCTGTTGACCAACGACCATCGACTGAATCGTCCCGACGAGCGGCAGCGCG
TA
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