mRNA_H-elongata_contig106347.520.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106347.520.1
Unique NamemRNA_H-elongata_contig106347.520.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig106347.520.1 vs. uniprot
Match: A0A8C5PP25_9ANUR (Reverse transcriptase domain-containing protein n=10 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5PP25_9ANUR)

HSP 1 Score: 56.6 bits (135), Expect = 1.220e-7
Identity = 27/62 (43.55%), Postives = 37/62 (59.68%), Query Frame = 1 
Query:   28 LHYAGHVAHMHDDRLPNIVMSGEMIGGKRKRGQPAKRVEHCVTEYCTAFGIDPKCWMRVAQD 213
            L +AGHVA M D+RLP +++ GE+  GKR +G   KR +  +     AF I+P  W   AQD
Sbjct:  835 LRWAGHVARMKDNRLPKMLLFGELTQGKRSQGGQKKRYKDTLKAALKAFNINPINWELAAQD 896
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BLAST of mRNA_H-elongata_contig106347.520.1 vs. uniprot
Match: UPI00071D5621 (uncharacterized protein LOC106879749 n=1 Tax=Octopus bimaculoides TaxID=37653 RepID=UPI00071D5621)

HSP 1 Score: 54.3 bits (129), Expect = 7.540e-7
Identity = 26/62 (41.94%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:   28 LHYAGHVAHMHDDRLPNIVMSGEMIGGKRKRGQPAKRVEHCVTEYCTAFGIDPKCWMRVAQD 213
            + +AGHVAH+ DDRLP  ++ GE+  GKR +G   KR +  +     AF ID   W + A D
Sbjct:  240 IRWAGHVAHVSDDRLPKRLIFGELQKGKRSQGGQKKRFKDILKASLKAFNIDHDTWEQSALD 301
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BLAST of mRNA_H-elongata_contig106347.520.1 vs. uniprot
Match: A0A6S7JKI9_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JKI9_PARCT)

HSP 1 Score: 51.2 bits (121), Expect = 9.000e-6
Identity = 23/65 (35.38%), Postives = 37/65 (56.92%), Query Frame = 1 
Query:   19 KRILHYAGHVAHMHDDRLPNIVMSGEMIGGKRKRGQPAKRVEHCVTEYCTAFGIDPKCWMRVAQD 213
            KR L +AGH+  M D+RLP I++ GE+  G R  G+P KR +  + +   +  +  + W   A+D
Sbjct:  227 KRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAED 291
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BLAST of mRNA_H-elongata_contig106347.520.1 vs. uniprot
Match: A0A6S7K883_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7K883_PARCT)

HSP 1 Score: 51.2 bits (121), Expect = 9.490e-6
Identity = 23/65 (35.38%), Postives = 37/65 (56.92%), Query Frame = 1 
Query:   19 KRILHYAGHVAHMHDDRLPNIVMSGEMIGGKRKRGQPAKRVEHCVTEYCTAFGIDPKCWMRVAQD 213
            KR L +AGH+  M D+RLP I++ GE+  G R  G+P KR +  + +   +  +  + W   A+D
Sbjct:  294 KRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAED 358
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BLAST of mRNA_H-elongata_contig106347.520.1 vs. uniprot
Match: A0A7D9M5G6_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M5G6_PARCT)

HSP 1 Score: 51.2 bits (121), Expect = 9.710e-6
Identity = 23/65 (35.38%), Postives = 37/65 (56.92%), Query Frame = 1 
Query:   19 KRILHYAGHVAHMHDDRLPNIVMSGEMIGGKRKRGQPAKRVEHCVTEYCTAFGIDPKCWMRVAQD 213
            KR L +AGH+  M D+RLP I++ GE+  G R  G+P KR +  + +   +  +  + W   A+D
Sbjct:  580 KRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAED 644
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BLAST of mRNA_H-elongata_contig106347.520.1 vs. uniprot
Match: A0A0L8G1T5_OCTBM (Uncharacterized protein n=1 Tax=Octopus bimaculoides TaxID=37653 RepID=A0A0L8G1T5_OCTBM)

HSP 1 Score: 48.5 bits (114), Expect = 1.370e-5
Identity = 24/67 (35.82%), Postives = 35/67 (52.24%), Query Frame = 1 
Query:   13 VIKRILHYAGHVAHMHDDRLPNIVMSGEMIGGKRKRGQPAKRVEHCVTEYCTAFGIDPKCWMRVAQD 213
            +++  LH+AGHVAHM + R+P  V+ GE+  GK   G      +  +     AF ID   W + A D
Sbjct:   20 LMRTQLHWAGHVAHMPNYRIPMKVLFGELQQGKHSHGGQRNGFKDSLKVSLKAFNIDQSSWEQTALD 86
[Close]
BLAST of mRNA_H-elongata_contig106347.520.1 vs. uniprot
Match: A0A6S7JBE9_PARCT (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JBE9_PARCT)

HSP 1 Score: 49.3 bits (116), Expect = 4.560e-5
Identity = 22/49 (44.90%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:    1 IDFAVIKRILHYAGHVAHMHDDRLPNIVMSGEMIGGKRKRGQPAKRVEH 147
            I+  + KR L +AGH+  M D+RLP I++ GE+  G R  G+P KR  H
Sbjct:  304 IESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRTSH 352
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106347.520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A8C5PP25_9ANUR1.220e-743.55Reverse transcriptase domain-containing protein n=... [more]
UPI00071D56217.540e-741.94uncharacterized protein LOC106879749 n=1 Tax=Octop... [more]
A0A6S7JKI9_PARCT9.000e-635.38Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A6S7K883_PARCT9.490e-635.38RNA-directed DNA polymerase from mobile element jo... [more]
A0A7D9M5G6_PARCT9.710e-635.38RNA-directed DNA polymerase from mobile element jo... [more]
A0A0L8G1T5_OCTBM1.370e-535.82Uncharacterized protein n=1 Tax=Octopus bimaculoid... [more]
A0A6S7JBE9_PARCT4.560e-544.90Reverse transcriptase domain-containing protein (F... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106347contigH-elongata_contig106347:439..651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929594.698633-CDS-H-elongata_contig106347:438..6511622929594.698633-CDS-H-elongata_contig106347:438..651Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106347 439..651 +
1691679083.7390776-CDS-H-elongata_contig106347:438..6511691679083.7390776-CDS-H-elongata_contig106347:438..651Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106347 439..651 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106347.520.1prot_H-elongata_contig106347.520.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106347 439..651 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106347.520.1

>prot_H-elongata_contig106347.520.1 ID=prot_H-elongata_contig106347.520.1|Name=mRNA_H-elongata_contig106347.520.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
IDFAVIKRILHYAGHVAHMHDDRLPNIVMSGEMIGGKRKRGQPAKRVEHC
VTEYCTAFGIDPKCWMRVAQD
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mRNA from alignment at H-elongata_contig106347:439..651+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106347.520.1 ID=mRNA_H-elongata_contig106347.520.1|Name=mRNA_H-elongata_contig106347.520.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig106347:439..651+ (Himanthalia elongata Himel1 dioecious)
ATTGACTTTGCTGTCATAAAGCGCATCCTCCACTACGCCGGCCATGTCGC
GCACATGCACGACGATCGTCTCCCCAACATCGTCATGAGTGGCGAAATGA
TCGGAGGGAAGAGAAAACGGGGTCAGCCTGCGAAACGCGTAGAACACTGT
GTCACGGAATACTGCACTGCCTTCGGAATCGACCCCAAGTGTTGGATGCG
GGTCGCCCAAGAT
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Coding sequence (CDS) from alignment at H-elongata_contig106347:439..651+

>mRNA_H-elongata_contig106347.520.1 ID=mRNA_H-elongata_contig106347.520.1|Name=mRNA_H-elongata_contig106347.520.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig106347:439..651+ (Himanthalia elongata Himel1 dioecious)
ATTGACTTTGCTGTCATAAAGCGCATCCTCCACTACGCCGGCCATGTCGC
GCACATGCACGACGATCGTCTCCCCAACATCGTCATGAGTGGCGAAATGA
TCGGAGGGAAGAGAAAACGGGGTCAGCCTGCGAAACGCGTAGAACACTGT
GTCACGGAATACTGCACTGCCTTCGGAATCGACCCCAAGTGTTGGATGCG
GGTCGCCCAAGATATTGACTTTGCTGTCATAAAGCGCATCCTCCACTACG
CCGGCCATGTCGCGCACATGCACGACGATCGTCTCCCCAACATCGTCATG
AGTGGCGAAATGATCGGAGGGAAGAGAAAACGGGGTCAGCCTGCGAAACG
CGTAGAACACTGTGTCACGGAATACTGCACTGCCTTCGGAATCGACCCCA
AGTGTTGGATGCGGGTCGCCCAAGAT
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