mRNA_H-elongata_contig18934.5199.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18934.5199.1
Unique NamemRNA_H-elongata_contig18934.5199.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig18934.5199.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 8.930e-43
Identity = 73/81 (90.12%), Postives = 78/81 (96.30%), Query Frame = 1
Query:    1 MQLTTEFFAEMMGNDVQPKDVFLAFTVDQGGNVVNACRNLGVEVLKCNAHRLNSVTMWALGISGSVKTGENPDMEKLMKRL 243
            MQLTTEFFA+MMG +VQPKDVFLAFTVDQGGNVVNACRNL VEVLKCNAHRLNSVTMWALGI+GS++TGENP MEKLMKRL
Sbjct:    1 MQLTTEFFADMMGENVQPKDVFLAFTVDQGGNVVNACRNLDVEVLKCNAHRLNSVTMWALGINGSIRTGENPAMEKLMKRL 81          
BLAST of mRNA_H-elongata_contig18934.5199.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 2.330e-40
Identity = 71/79 (89.87%), Postives = 76/79 (96.20%), Query Frame = 1
Query:    7 LTTEFFAEMMGNDVQPKDVFLAFTVDQGGNVVNACRNLGVEVLKCNAHRLNSVTMWALGISGSVKTGENPDMEKLMKRL 243
            LTTEFFA+MMG +VQPKDVFLAFTVDQGGNVVNACRNL VEVLKCNAHRLNSVTMWALGI+GS++TGENP MEKLMKRL
Sbjct:  331 LTTEFFADMMGENVQPKDVFLAFTVDQGGNVVNACRNLDVEVLKCNAHRLNSVTMWALGINGSIRTGENPAMEKLMKRL 409          
BLAST of mRNA_H-elongata_contig18934.5199.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.030e-26
Identity = 52/80 (65.00%), Postives = 60/80 (75.00%), Query Frame = 1
Query:    4 QLTTEFFAEMMGNDVQPKDVFLAFTVDQGGNVVNACRNLGVEVLKCNAHRLNSVTMWALGISGSVKTGENPDMEKLMKRL 243
            QLT E+F   MG  V+P DVFLAFTVDQGGNVVNAC  LGV+V+KCN HR+NS  +WALGI+GS  T  N  M  LMK+L
Sbjct:    6 QLTKEYFGGFMGESVEPSDVFLAFTVDQGGNVVNACTALGVQVVKCNCHRINSAVVWALGIAGSATTCRNTKMGGLMKKL 85          
BLAST of mRNA_H-elongata_contig18934.5199.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 9.710e-26
Identity = 51/80 (63.75%), Postives = 64/80 (80.00%), Query Frame = 1
Query:    4 QLTTEFFAEMMGNDVQPKDVFLAFTVDQGGNVVNACRNLGVEVLKCNAHRLNSVTMWALGISGSVKTGENPDMEKLMKRL 243
            +LT E+FA+ MG DV+PKDVFLAFTVDQGGNVVNAC+ LGV V+KCN HR+N+  +WALGI+G+ +   N  M  LMK+L
Sbjct:  340 ELTREYFADFMGEDVEPKDVFLAFTVDQGGNVVNACKALGVPVVKCNCHRVNTAVLWALGIAGNGR--RNKVMGDLMKKL 417          
BLAST of mRNA_H-elongata_contig18934.5199.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 6.530e-23
Identity = 46/75 (61.33%), Postives = 58/75 (77.33%), Query Frame = 1
Query:    7 LTTEFFAEMMGNDVQPKDVFLAFTVDQGGNVVNACRNLGVEVLKCNAHRLNSVTMWALGISGSVKTGENPDMEKL 231
            LT E+F ++MG  V+ +DVFLAFTVDQG NVVNAC  LGV V++CN HR+NS  +WALGI+GS  T +N  M+KL
Sbjct:  152 LTLEYFTDLMGGSVESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRVNSAVLWALGIAGSATTCKNKPMKKL 226          
BLAST of mRNA_H-elongata_contig18934.5199.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.220e-22
Identity = 46/75 (61.33%), Postives = 58/75 (77.33%), Query Frame = 1
Query:    7 LTTEFFAEMMGNDVQPKDVFLAFTVDQGGNVVNACRNLGVEVLKCNAHRLNSVTMWALGISGSVKTGENPDMEKL 231
            LT E+  ++MG  V+ +DVFLAFTVDQG NVVNAC  LGV V++CN HR+NS  +WALGI+GSV T +N  M+KL
Sbjct:  152 LTLEYLTDLMGGSVESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRVNSAVLWALGIAGSVTTCKNKPMKKL 226          
BLAST of mRNA_H-elongata_contig18934.5199.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.670e-22
Identity = 47/80 (58.75%), Postives = 59/80 (73.75%), Query Frame = 1
Query:    4 QLTTEFFAEMMGNDVQPKDVFLAFTVDQGGNVVNACRNLGVEVLKCNAHRLNSVTMWALGISGSVKTGENPDMEKLMKRL 243
            +LT E+F+  MG  VQP DVFLAFTVDQG N++NAC  LGV V++CN HRLN+  +WALGI+G  +   NP M  LMK+L
Sbjct:  147 KLTLEYFSGFMGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLNTAVVWALGIAGKGRL--NPAMGTLMKKL 224          
BLAST of mRNA_H-elongata_contig18934.5199.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.700e-22
Identity = 47/80 (58.75%), Postives = 59/80 (73.75%), Query Frame = 1
Query:    4 QLTTEFFAEMMGNDVQPKDVFLAFTVDQGGNVVNACRNLGVEVLKCNAHRLNSVTMWALGISGSVKTGENPDMEKLMKRL 243
            +LT E+F+  MG  VQP DVFLAFTVDQG N++NAC  LGV V++CN HRLN+  +WALGI+G  +   NP M  LMK+L
Sbjct:  342 KLTLEYFSGFMGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLNTAVVWALGIAGKGRL--NPAMGTLMKKL 419          
BLAST of mRNA_H-elongata_contig18934.5199.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.860e-21
Identity = 45/79 (56.96%), Postives = 58/79 (73.42%), Query Frame = 1
Query:    7 LTTEFFAEMMGNDVQPKDVFLAFTVDQGGNVVNACRNLGVEVLKCNAHRLNSVTMWALGISGSVKTGENPDMEKLMKRL 243
            LT E+F +++G  VQP DVFL FTVDQG N+VNA   LGV V++CN HR+NS  +WALGI+G  +T +N  M  LMK+L
Sbjct:  149 LTLEYFKDLIGPSVQPHDVFLGFTVDQGKNIVNAYTALGVPVVECNCHRVNSAVLWALGIAGCARTCKNKLMGDLMKKL 227          
BLAST of mRNA_H-elongata_contig18934.5199.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.630e-15
Identity = 38/70 (54.29%), Postives = 49/70 (70.00%), Query Frame = 1
Query:   34 MGNDVQPKDVFLAFTVDQGGNVVNACRNLGVEVLKCNAHRLNSVTMWALGISGSVKTGENPDMEKLMKRL 243
            MG  V P + FLAFTVDQG N++NAC  L V V++CN HR+N+  +WALGI+   K  +NP M  LMK+L
Sbjct:    1 MGESVVPSNDFLAFTVDQGKNIINACTALDVTVVECNCHRVNTAVVWALGIAA--KGRKNPTMGTLMKKL 68          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18934.5199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5KAN7_9PHAE8.930e-4390.12Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE2.330e-4089.87Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KDJ6_9PHAE1.030e-2665.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE9.710e-2663.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE6.530e-2361.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZU3_9PHAE1.220e-2261.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTB8_9PHAE1.670e-2258.75Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE1.700e-2258.75Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5JXV5_9PHAE1.860e-2156.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAS2_9PHAE1.630e-1554.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18934contigH-elongata_contig18934:6475..6717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size243
Cds size243
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930081.8119452-CDS-H-elongata_contig18934:6474..67171622930081.8119452-CDS-H-elongata_contig18934:6474..6717Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18934 6475..6717 -
1691679273.7507453-CDS-H-elongata_contig18934:6474..67171691679273.7507453-CDS-H-elongata_contig18934:6474..6717Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18934 6475..6717 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18934.5199.1prot_H-elongata_contig18934.5199.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18934 6475..6717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18934.5199.1

>prot_H-elongata_contig18934.5199.1 ID=prot_H-elongata_contig18934.5199.1|Name=mRNA_H-elongata_contig18934.5199.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
MQLTTEFFAEMMGNDVQPKDVFLAFTVDQGGNVVNACRNLGVEVLKCNAH
RLNSVTMWALGISGSVKTGENPDMEKLMKRL
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mRNA from alignment at H-elongata_contig18934:6475..6717-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18934.5199.1 ID=mRNA_H-elongata_contig18934.5199.1|Name=mRNA_H-elongata_contig18934.5199.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at H-elongata_contig18934:6475..6717- (Himanthalia elongata Himel1 dioecious)
ATGCAGCTGACGACCGAGTTTTTCGCGGAGATGATGGGAAACGACGTGCA GCCGAAGGACGTCTTCCTTGCGTTTACTGTAGATCAGGGTGGCAATGTGG TGAATGCTTGCCGAAACTTGGGTGTTGAAGTGCTCAAGTGCAACGCCCAC CGGCTCAACTCTGTCACGATGTGGGCTTTGGGGATAAGTGGTTCGGTGAA AACGGGCGAAAACCCAGACATGGAAAAGCTGATGAAGAGACTG
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Coding sequence (CDS) from alignment at H-elongata_contig18934:6475..6717-

>mRNA_H-elongata_contig18934.5199.1 ID=mRNA_H-elongata_contig18934.5199.1|Name=mRNA_H-elongata_contig18934.5199.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig18934:6475..6717- (Himanthalia elongata Himel1 dioecious)
ATGCAGCTGACGACCGAGTTTTTCGCGGAGATGATGGGAAACGACGTGCA
GCCGAAGGACGTCTTCCTTGCGTTTACTGTAGATCAGGGTGGCAATGTGG
TGAATGCTTGCCGAAACTTGGGTGTTGAAGTGCTCAAGTGCAACGCCCAC
CGGCTCAACTCTGTCACGATGTGGGCTTTGGGGATAAGTGGTTCGGTGAA
AACGGGCGAAAACCCAGACATGGAAAAGCTGATGAAGAGACTGATGCAGC
TGACGACCGAGTTTTTCGCGGAGATGATGGGAAACGACGTGCAGCCGAAG
GACGTCTTCCTTGCGTTTACTGTAGATCAGGGTGGCAATGTGGTGAATGC
TTGCCGAAACTTGGGTGTTGAAGTGCTCAAGTGCAACGCCCACCGGCTCA
ACTCTGTCACGATGTGGGCTTTGGGGATAAGTGGTTCGGTGAAAACGGGC
GAAAACCCAGACATGGAAAAGCTGATGAAGAGACTG
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