mRNA_H-elongata_contig189231.5195.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig189231.5195.1
Unique NamemRNA_H-elongata_contig189231.5195.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig189231.5195.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 240 bits (612), Expect = 1.900e-72
Identity = 118/275 (42.91%), Postives = 183/275 (66.55%), Query Frame = 2
Query:   83 EIGLEQCKAEPCVFRLLVEDEVSLMVGVHVDDIIVSGEKDACDKFFT*LQEWFPVKNQGELTMYTGCAFVRDWESGVLEMNQTAFAESLVAQYEVSATSNIPGSPSVDLGPRKEGEPGGDDEFSQYRPLVYSLMWLSVMTRPDIANALRACAPHSQNPSPRNWKALLQIAAYVNATK*IGLRFVQGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIGWKSSTQKCVTTATCEAEYVALCDASKEALFMRAALVFLQPDLTGMRVDIFGDN 907
            E G EQCKA+PCVFR +V++ V +++ ++VDDI+V+G  + C++    L + FP KN GE   + GCA  RD E+G L ++QTA+ +S+V +++V +TS IP +P  DLGP++E E GG+      R  + S+MW+S  +RPD++ A+RA A H+  P+ R+W A+ +I  Y+  T+ +G+ + +GSGL L+VY DA YA  + DRRSVSG+A  +G T +   S TQ  V+ ++ EAEY+A  +  +EALF+RA L F+ P+ +G  + +  DN
Sbjct:  192 ENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPV---REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVEEALFLRAELSFVAPETSGSSIQVLEDN 462          
BLAST of mRNA_H-elongata_contig189231.5195.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 9.760e-71
Identity = 129/276 (46.74%), Postives = 168/276 (60.87%), Query Frame = 2
Query:   86 IGLEQCKAEPCVFRLLVEDEVSLMVGVHVDDIIVSGEKDACDKFFT*LQEWFPVKNQGELTMYTGCAFVRDWESGVLEMNQTAFAESLVAQYEVSATSNIPGSPSVDLGPRKEGEPGGDDEFSQYRPLVYSLMWLSVMTRPDIANALRACAPHSQNPSPRNWKALLQIAAYVNATK*IGLRFVQG--SGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIGWKSSTQKCVTTATCEAEYVALCDASKEALFMRAALVFLQPDLTGMRVDIFGDN 907
            +G  QC A+ CVFRL+ E  V +++ VHVDDI   G+K+ CDKF   L E  PVKN GEL  Y+ C + RD E G+L ++Q  FAE L A+Y +    ++P   SV L    E E   D  F   R LV SLMWL+  TRPDIANA+RA A +  +P   +WKA L I  YV  T  +G+ F +G  +G+ + V+ DADYA+ + DRRSVSG  VM G   + W S TQKCVT +T EAEYVA+ D  KE LF+R    F+ PD +   + +F DN
Sbjct:   34 LGFLQCLADACVFRLMEEGRVIMIIVVHVDDIFAVGQKERCDKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSVPLPVSVKLTDFDENEASADVPF---RELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDN 306          
BLAST of mRNA_H-elongata_contig189231.5195.1 vs. uniprot
Match: A0A6H5K274_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K274_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 1.850e-70
Identity = 118/272 (43.38%), Postives = 183/272 (67.28%), Query Frame = 2
Query:   92 LEQCKAEPCVFRLLVEDEVSLMVGVHVDDIIVSGEKDACDKFFT*LQEWFPVKNQGELTMYTGCAFVRDWESGVLEMNQTAFAESLVAQYEVSATSNIPGSPSVDLGPRKEGEPGGDDEFSQYRPLVYSLMWLSVMTRPDIANALRACAPHSQNPSPRNWKALLQIAAYVNATK*IGLRFVQGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIGWKSSTQKCVTTATCEAEYVALCDASKEALFMRAALVFLQPDLTGMRVDIFGDN 907
            +EQCKA+PCVFR +V++ V +++ ++VDDI+V+G  + C++    L + FP KN GE   + GCA  RD E+G L ++QTA+ +S+VA+++V +TS IP +P  DLGP++E E GG+      R  + S+MW+S  +RPD++ A+RA A H+  P+ R+W A+ +I  Y+  T+ +G+ + +GSGL L+VY DA YA  + DRRSVSG+A  +G T +   S TQ  V+ ++ EAEY+A  +  KEALF+RA L+F+ P+  G  + +  DN
Sbjct:  419 VEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVARFDVQSTSRIPATPGADLGPKREDEEGGEWPV---REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSMEAEYIAAGEGVKEALFVRAVLLFVAPETRGSSIQVLEDN 686          
BLAST of mRNA_H-elongata_contig189231.5195.1 vs. uniprot
Match: A0A6H5JVD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD4_9PHAE)

HSP 1 Score: 233 bits (595), Expect = 2.340e-70
Identity = 116/266 (43.61%), Postives = 178/266 (66.92%), Query Frame = 2
Query:   83 EIGLEQCKAEPCVFRLLVEDEVSLMVGVHVDDIIVSGEKDACDKFFT*LQEWFPVKNQGELTMYTGCAFVRDWESGVLEMNQTAFAESLVAQYEVSATSNIPGSPSVDLGPRKEGEPGGDDEFSQYRPLVYSLMWLSVMTRPDIANALRACAPHSQNPSPRNWKALLQIAAYVNATK*IGLRFVQGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIGWKSSTQKCVTTATCEAEYVALCDASKEALFMRAALVFLQPDLTG 880
            E G EQCKA+PCVFR +V++ V +++ ++VDDI+V+G  + C++    L + FP KN GE   + GCA  RD E+G L ++QTA+ +S+V +++V +TS IP +P  DLGP++E E GG+      R  + S+MW+S  +RPD++ A+RA A H+  P+ R+W A+ +I  Y+  T+ +G+ + +GSGL L+VY DA YA  + DRRSVSG+A  +G T +   S TQ  V+ ++ EAEY+A  +  KE+LF+RA L F+ P+  G
Sbjct:  128 ENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVQSTSRIPATPGADLGPQREDEEGGEWPV---REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKESLFVRAVLSFVAPETRG 389          
BLAST of mRNA_H-elongata_contig189231.5195.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 230 bits (586), Expect = 4.180e-69
Identity = 129/276 (46.74%), Postives = 167/276 (60.51%), Query Frame = 2
Query:   86 IGLEQCKAEPCVFRLLVEDEVSLMVGVHVDDIIVSGEKDACDKFFT*LQEWFPVKNQGELTMYTGCAFVRDWESGVLEMNQTAFAESLVAQYEVSATSNIPGSPSVDLGPRKEGEPGGDDEFSQYRPLVYSLMWLSVMTRPDIANALRACAPHSQNPSPRNWKALLQIAAYVNATK*IGLRFVQG--SGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIGWKSSTQKCVTTATCEAEYVALCDASKEALFMRAALVFLQPDLTGMRVDIFGDN 907
            +G  QC A+ CVFRL+ E  V +++ VHVDDI   G+K+ CDKF   L E  PVKN GEL  Y+ C + RD E G+L ++Q  FAE L A+Y +    ++P   SV L    E E   D  F   R LV SLMWL+  TRPDIANA+RA A +  +P   +WKA L I  YV  T  +G+ F +G  +G+ + V+ DADYA+ + DRRSVSG  VM G   + W S TQKCVT +T EAEYVA+ D  KE LF+R    F+ PD     + +F DN
Sbjct:   96 LGFLQCLADACVFRLMEEGRVIMIIVVHVDDIFAVGQKERCDKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSVPLPVSVKLTDFDENEACADVPF---RELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDN 368          
BLAST of mRNA_H-elongata_contig189231.5195.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 1.210e-68
Identity = 119/275 (43.27%), Postives = 183/275 (66.55%), Query Frame = 2
Query:   83 EIGLEQCKAEPCVFRLLVEDEVSLMVGVHVDDIIVSGEKDACDKFFT*LQEWFPVKNQGELTMYTGCAFVRDWESGVLEMNQTAFAESLVAQYEVSATSNIPGSPSVDLGPRKEGEPGGDDEFSQYRPLVYSLMWLSVMTRPDIANALRACAPHSQNPSPRNWKALLQIAAYVNATK*IGLRFVQGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIGWKSSTQKCVTTATCEAEYVALCDASKEALFMRAALVFLQPDLTGMRVDIFGDN 907
            E G EQCKA+PCVFR +V++ V +++ ++VDDI+V+G  + C++    L + FP KN GE   + GCA  RD E+G L ++QTA+ +S+V +++V +TS IP +P  DLGP++E E GG+      R  + S+MW+S  +RPD++ A+RA A H+  P+ R+W A+ +I  Y+  T+ +G+ + +GSGL L+VY DA YA  + DRRSVSG+A  +G T +   S TQ  V+ ++ EAEY+A  +  KEALF+RA L F+ P+ +G  + +  DN
Sbjct:  905 ENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPV---REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDN 1175          
BLAST of mRNA_H-elongata_contig189231.5195.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 1.600e-68
Identity = 119/275 (43.27%), Postives = 183/275 (66.55%), Query Frame = 2
Query:   83 EIGLEQCKAEPCVFRLLVEDEVSLMVGVHVDDIIVSGEKDACDKFFT*LQEWFPVKNQGELTMYTGCAFVRDWESGVLEMNQTAFAESLVAQYEVSATSNIPGSPSVDLGPRKEGEPGGDDEFSQYRPLVYSLMWLSVMTRPDIANALRACAPHSQNPSPRNWKALLQIAAYVNATK*IGLRFVQGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIGWKSSTQKCVTTATCEAEYVALCDASKEALFMRAALVFLQPDLTGMRVDIFGDN 907
            E G EQCKA+PCVFR +V++ V +++ ++VDDI+V+G  + C++    L + FP KN GE   + GCA  RD E+G L ++QTA+ +S+V +++V +TS IP +P  DLGP++E E GG+      R  + S+MW+S  +RPD++ A+RA A H+  P+ R+W A+ +I  Y+  T+ +G+ + +GSGL L+VY DA YA  + DRRSVSG+A  +G T +   S TQ  V+ ++ EAEY+A  +  KEALF+RA L F+ P+ +G  + +  DN
Sbjct: 1284 ENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPV---REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDN 1554          
BLAST of mRNA_H-elongata_contig189231.5195.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 1.630e-68
Identity = 119/275 (43.27%), Postives = 183/275 (66.55%), Query Frame = 2
Query:   83 EIGLEQCKAEPCVFRLLVEDEVSLMVGVHVDDIIVSGEKDACDKFFT*LQEWFPVKNQGELTMYTGCAFVRDWESGVLEMNQTAFAESLVAQYEVSATSNIPGSPSVDLGPRKEGEPGGDDEFSQYRPLVYSLMWLSVMTRPDIANALRACAPHSQNPSPRNWKALLQIAAYVNATK*IGLRFVQGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIGWKSSTQKCVTTATCEAEYVALCDASKEALFMRAALVFLQPDLTGMRVDIFGDN 907
            E G EQCKA+PCVFR +V++ V +++ ++VDDI+V+G  + C++    L + FP KN GE   + GCA  RD E+G L ++QTA+ +S+V +++V +TS IP +P  DLGP++E E GG+      R  + S+MW+S  +RPD++ A+RA A H+  P+ R+W A+ +I  Y+  T+ +G+ + +GSGL L+VY DA YA  + DRRSVSG+A  +G T +   S TQ  V+ ++ EAEY+A  +  KEALF+RA L F+ P+ +G  + +  DN
Sbjct: 1447 ENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPV---REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDN 1717          
BLAST of mRNA_H-elongata_contig189231.5195.1 vs. uniprot
Match: A0A6H5JRE9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE9_9PHAE)

HSP 1 Score: 241 bits (614), Expect = 1.840e-68
Identity = 118/275 (42.91%), Postives = 182/275 (66.18%), Query Frame = 2
Query:   83 EIGLEQCKAEPCVFRLLVEDEVSLMVGVHVDDIIVSGEKDACDKFFT*LQEWFPVKNQGELTMYTGCAFVRDWESGVLEMNQTAFAESLVAQYEVSATSNIPGSPSVDLGPRKEGEPGGDDEFSQYRPLVYSLMWLSVMTRPDIANALRACAPHSQNPSPRNWKALLQIAAYVNATK*IGLRFVQGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIGWKSSTQKCVTTATCEAEYVALCDASKEALFMRAALVFLQPDLTGMRVDIFGDN 907
            E G EQCKA+PCVFR +V++ V +++ ++VDDI+V+G  + C++    L + FP KN GE   + GCA  RD E+G L ++QTA+ +S+V +++V +TS IP +P  DLGP++E E GG+      R  + S+MW+S  +RPD++ A+RA   H+  P+ R+W A+ +I  Y+  T+ +G+ + +GSGL L+VY DA YA  + DRRSVSG+A  +G T +   S TQ  V+ ++ EAEY+A  +  KEALF+RA L F+ P+ +G  + +  DN
Sbjct:  842 ENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKMFPTKNLGECEWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPV---REAIGSMMWVSTFSRPDVSFAVRAVVRHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPEASGSSIQVLEDN 1112          
BLAST of mRNA_H-elongata_contig189231.5195.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 2.990e-68
Identity = 119/275 (43.27%), Postives = 182/275 (66.18%), Query Frame = 2
Query:   83 EIGLEQCKAEPCVFRLLVEDEVSLMVGVHVDDIIVSGEKDACDKFFT*LQEWFPVKNQGELTMYTGCAFVRDWESGVLEMNQTAFAESLVAQYEVSATSNIPGSPSVDLGPRKEGEPGGDDEFSQYRPLVYSLMWLSVMTRPDIANALRACAPHSQNPSPRNWKALLQIAAYVNATK*IGLRFVQGSGLKLSVYADADYAAASNDRRSVSGVAVMLGNTAIGWKSSTQKCVTTATCEAEYVALCDASKEALFMRAALVFLQPDLTGMRVDIFGDN 907
            E G EQCKA+PCVFR +V+  V +++ ++VDDI+V+G  + C++    L + FP KN GE   + GCA  RD E+G L ++QTA+ +S+V +++V +TS IP +P  DLGP++E E GG+      R  + S+MW+S  +RPD++ A+RA A H+  P+ R+W A+ +I  Y+  T+ +G+ + +GSGL L+VY DA YA  + DRRSVSG+A  +G T +   S TQ  V+ ++ EAEY+A  +  KEALF+RA L F+ P+ +G  + +  DN
Sbjct: 1304 ENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPV---REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDN 1574          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig189231.5195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTL3_9PHAE1.900e-7242.91Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L4G9_9PHAE9.760e-7146.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K274_9PHAE1.850e-7043.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVD4_9PHAE2.340e-7043.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEF2_9PHAE4.180e-6946.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE1.210e-6843.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE1.600e-6843.27Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.630e-6843.27Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JRE9_9PHAE1.840e-6842.91Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JN00_9PHAE2.990e-6843.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig189231contigH-elongata_contig189231:287..1193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size907
Cds size183
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930081.4960988-UTR-H-elongata_contig189231:286..10101622930081.4960988-UTR-H-elongata_contig189231:286..1010Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig189231 287..1010 +
1691679273.6460495-UTR-H-elongata_contig189231:286..10101691679273.6460495-UTR-H-elongata_contig189231:286..1010Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig189231 287..1010 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930081.5085516-CDS-H-elongata_contig189231:1010..11931622930081.5085516-CDS-H-elongata_contig189231:1010..1193Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189231 1011..1193 +
1691679273.663406-CDS-H-elongata_contig189231:1010..11931691679273.663406-CDS-H-elongata_contig189231:1010..1193Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189231 1011..1193 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig189231.5195.1prot_H-elongata_contig189231.5195.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig189231 1011..1193 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig189231.5195.1

>prot_H-elongata_contig189231.5195.1 ID=prot_H-elongata_contig189231.5195.1|Name=mRNA_H-elongata_contig189231.5195.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
MLGNTAIGWKSSTQKCVTTATCEAEYVALCDASKEALFMRAALVFLQPDL
TGMRVDIFGDN
back to top

mRNA from alignment at H-elongata_contig189231:287..1193+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig189231.5195.1 ID=mRNA_H-elongata_contig189231.5195.1|Name=mRNA_H-elongata_contig189231.5195.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=907bp|location=Sequence derived from alignment at H-elongata_contig189231:287..1193+ (Himanthalia elongata Himel1 dioecious)
GTCGTTCAACTTTTGAAGTTCCAGTACGGTCTCAAGCAGGCCAGAAGAGA GTGGCACATGCTTGGTAAACTGGCTAGTAGATGAGATTGGTCTCGAACAG TGCAAGGCAGAGCCATGTGTTTTTCGGCTGCTGGTTGAGGATGAGGTGTC GTTGATGGTCGGAGTCCACGTGGATGATATCATTGTGTCTGGTGAGAAGG ATGCGTGCGATAAATTCTTCACGTAGCTGCAAGAGTGGTTTCCTGTCAAA AACCAAGGGGAACTGACGATGTACACTGGTTGTGCTTTCGTCCGTGACTG GGAATCAGGTGTGTTGGAGATGAACCAGACTGCATTTGCGGAAAGCCTGG TGGCGCAGTATGAAGTCTCTGCGACCTCGAACATCCCGGGTAGTCCGAGT GTAGATCTAGGTCCTAGGAAGGAGGGCGAGCCGGGGGGTGATGATGAGTT TTCCCAGTACCGACCCCTAGTTTATAGTTTGATGTGGCTATCAGTGATGA CGAGACCTGATATCGCTAATGCGTTGCGCGCGTGCGCGCCTCACAGCCAA AACCCTAGCCCGCGGAACTGGAAGGCGCTCCTGCAGATCGCTGCGTACGT GAATGCCACAAAATAGATAGGTCTGAGGTTTGTGCAAGGTTCTGGTCTGA AGCTTTCTGTTTACGCTGATGCTGATTACGCGGCGGCATCTAACGATCGA AGGTCCGTGTCCGGTGTTGCAGTGATGTTGGGAAACACAGCCATTGGCTG GAAGAGTTCTACGCAGAAATGCGTGACGACTGCCACGTGTGAAGCCGAGT ACGTTGCATTGTGTGATGCGTCCAAAGAGGCGCTCTTCATGAGAGCCGCC TTGGTATTCCTGCAGCCTGACTTGACCGGGATGAGAGTGGATATTTTCGG TGACAAT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig189231:287..1193+

>mRNA_H-elongata_contig189231.5195.1 ID=mRNA_H-elongata_contig189231.5195.1|Name=mRNA_H-elongata_contig189231.5195.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig189231:287..1193+ (Himanthalia elongata Himel1 dioecious)
ATGTTGGGAAACACAGCCATTGGCTGGAAGAGTTCTACGCAGAAATGCGT
GACGACTGCCACGTGTGAAGCCGAGTACGTTGCATTGTGTGATGCGTCCA
AAGAGGCGCTCTTCATGAGAGCCGCCTTGGTATTCCTGCAGCCTGACTTG
ACCGGGATGAGAGTGGATATTTTCGGTGACAATATGTTGGGAAACACAGC
CATTGGCTGGAAGAGTTCTACGCAGAAATGCGTGACGACTGCCACGTGTG
AAGCCGAGTACGTTGCATTGTGTGATGCGTCCAAAGAGGCGCTCTTCATG
AGAGCCGCCTTGGTATTCCTGCAGCCTGACTTGACCGGGATGAGAGTGGA
TATTTTCGGTGACAAT
back to top