mRNA_H-elongata_contig189166.5193.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig189166.5193.1
Unique NamemRNA_H-elongata_contig189166.5193.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig189166.5193.1 vs. uniprot
Match: D8LHC7_ECTSI (Asp_Arg_Hydrox domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHC7_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 2.460e-16
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    4 KGRCLVFDDCYEHEVWNRTEGERVLLLFDLWHPELVPQVR 123
            +G+CLVFDDCYEHEVWN+TE ERVLLLFDLWHP+L  + R
Sbjct:  156 EGKCLVFDDCYEHEVWNKTERERVLLLFDLWHPDLAGEER 195
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BLAST of mRNA_H-elongata_contig189166.5193.1 vs. uniprot
Match: A0A7R9YNQ3_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9YNQ3_DIALT)

HSP 1 Score: 67.4 bits (163), Expect = 3.180e-13
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    4 KGRCLVFDDCYEHEVWNRTEGERVLLLFDLWHPELVPQVR 123
            +G+ LVFDDCYEH VWNRT   RVLLLFDLWHP+L    R
Sbjct:   86 EGKLLVFDDCYEHAVWNRTAEPRVLLLFDLWHPDLAESER 125
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BLAST of mRNA_H-elongata_contig189166.5193.1 vs. uniprot
Match: A0A7S1FQB8_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FQB8_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 3.260e-13
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    4 KGRCLVFDDCYEHEVWNRTEGERVLLLFDLWHPELVPQVR 123
            +G+ +V DD YEHEVWN+T GERV+LLFD+WHP++ P  R
Sbjct:   74 EGKAIVLDDAYEHEVWNKTSGERVILLFDIWHPDVHPDER 113
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BLAST of mRNA_H-elongata_contig189166.5193.1 vs. uniprot
Match: W7TMY5_9STRA (Aspartyl asparaginyl beta-hydroxylase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TMY5_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 4.380e-13
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 IKGRCLVFDDCYEHEVWNRTEGERVLLLFDLWHPELVPQVR 123
            ++G+CLVFDD YEHEVWN TE ERVLLL D WHPE+  + R
Sbjct:  219 VEGKCLVFDDAYEHEVWNLTEEERVLLLVDFWHPEIALEER 259
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BLAST of mRNA_H-elongata_contig189166.5193.1 vs. uniprot
Match: W7U6N4_9STRA (Aspartyl asparaginyl beta-hydroxylase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6N4_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 6.290e-13
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 IKGRCLVFDDCYEHEVWNRTEGERVLLLFDLWHPELVPQVR 123
            ++G+CLVFDD YEHEVWN TE ERVLLL D WHPE+  + R
Sbjct:  273 VEGKCLVFDDAYEHEVWNLTEEERVLLLVDFWHPEIALEER 313
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BLAST of mRNA_H-elongata_contig189166.5193.1 vs. uniprot
Match: A0A7S3MFY7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MFY7_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 7.500e-13
Identity = 27/37 (72.97%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    4 KGRCLVFDDCYEHEVWNRTEGERVLLLFDLWHPELVP 114
            +G+ ++FDDCYEH+VWN T+ ERVLLLFDLWHPEL P
Sbjct:  181 EGKPVLFDDCYEHKVWNETDEERVLLLFDLWHPELHP 217
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BLAST of mRNA_H-elongata_contig189166.5193.1 vs. uniprot
Match: A0A836CPE8_9STRA (Putative aspartyl/Asparaginyl beta-hydroxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPE8_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.110e-12
Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    4 KGRCLVFDDCYEHEVWNRTEGERVLLLFDLWHPELVPQVR 123
            +G+ ++FDD YEHEVWN T  +RV+LLFD+WHPELVP  R
Sbjct:  186 EGKAMLFDDAYEHEVWNHTGSQRVVLLFDIWHPELVPDER 225
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BLAST of mRNA_H-elongata_contig189166.5193.1 vs. uniprot
Match: R1DDX9_EMIHU (Asp_Arg_Hydrox domain-containing protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DDX9_EMIHU)

HSP 1 Score: 68.2 bits (165), Expect = 1.280e-12
Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    4 KGRCLVFDDCYEHEVWNRTEGERVLLLFDLWHPELVP 114
            +GRCLVFDD YEHEVWN + GER +LLFD+WHP L P
Sbjct:  190 EGRCLVFDDAYEHEVWNDSAGERAVLLFDIWHPLLSP 226
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BLAST of mRNA_H-elongata_contig189166.5193.1 vs. uniprot
Match: A0A8J5XA02_DIALT (Asp_Arg_Hydrox domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XA02_DIALT)

HSP 1 Score: 67.4 bits (163), Expect = 2.200e-12
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    4 KGRCLVFDDCYEHEVWNRTEGERVLLLFDLWHPELVPQVR 123
            +G+ LVFDDCYEH VWNRT   RVLLLFDLWHP+L    R
Sbjct:  187 EGKLLVFDDCYEHAVWNRTAEPRVLLLFDLWHPDLAESER 226
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BLAST of mRNA_H-elongata_contig189166.5193.1 vs. uniprot
Match: A0A6G0WYQ0_9STRA (Asp_Arg_Hydrox domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WYQ0_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 3.850e-12
Identity = 26/41 (63.41%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    4 KGRCLVFDDCYEHEVWNR-TEGERVLLLFDLWHPELVPQVR 123
            +G+CL+FDD Y+HEVW+   EGERV+LLFD+WHP+L+P+ R
Sbjct:  175 EGKCLLFDDSYDHEVWHDGLEGERVVLLFDIWHPDLIPEER 215
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig189166.5193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHC7_ECTSI2.460e-1677.50Asp_Arg_Hydrox domain-containing protein n=2 Tax=E... [more]
A0A7R9YNQ3_DIALT3.180e-1370.00Hypothetical protein (Fragment) n=1 Tax=Diacronema... [more]
A0A7S1FQB8_9STRA3.260e-1362.50Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
W7TMY5_9STRA4.380e-1368.29Aspartyl asparaginyl beta-hydroxylase n=2 Tax=Mono... [more]
W7U6N4_9STRA6.290e-1368.29Aspartyl asparaginyl beta-hydroxylase n=1 Tax=Nann... [more]
A0A7S3MFY7_9STRA7.500e-1372.97Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A836CPE8_9STRA1.110e-1265.00Putative aspartyl/Asparaginyl beta-hydroxylase n=1... [more]
R1DDX9_EMIHU1.280e-1272.97Asp_Arg_Hydrox domain-containing protein n=3 Tax=E... [more]
A0A8J5XA02_DIALT2.200e-1270.00Asp_Arg_Hydrox domain-containing protein n=2 Tax=D... [more]
A0A6G0WYQ0_9STRA3.850e-1263.41Asp_Arg_Hydrox domain-containing protein n=1 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig189166contigH-elongata_contig189166:808..930 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue1.7e-12
Seed eggNOG ortholog2880.D8LHC7
Preferred nameASPHD2
KEGG koko:K00476
EggNOG free text desc.peptide-aspartate beta-dioxygenase activity
EggNOG OGsCOG3555@1,KOG3696@2759
EC1.14.11.16
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size123
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930081.320413-CDS-H-elongata_contig189166:807..9301622930081.320413-CDS-H-elongata_contig189166:807..930Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189166 808..930 -
1691679273.5813415-CDS-H-elongata_contig189166:807..9301691679273.5813415-CDS-H-elongata_contig189166:807..930Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig189166 808..930 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig189166.5193.1prot_H-elongata_contig189166.5193.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig189166 808..930 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig189166.5193.1

>prot_H-elongata_contig189166.5193.1 ID=prot_H-elongata_contig189166.5193.1|Name=mRNA_H-elongata_contig189166.5193.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=41bp
IKGRCLVFDDCYEHEVWNRTEGERVLLLFDLWHPELVPQVR
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mRNA from alignment at H-elongata_contig189166:808..930-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig189166.5193.1 ID=mRNA_H-elongata_contig189166.5193.1|Name=mRNA_H-elongata_contig189166.5193.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=123bp|location=Sequence derived from alignment at H-elongata_contig189166:808..930- (Himanthalia elongata Himel1 dioecious)
ATAAAAGGGCGGTGCTTGGTCTTCGACGACTGCTACGAGCATGAGGTGTG
GAACAGGACCGAAGGCGAACGGGTGCTACTGCTGTTCGACCTCTGGCACC
CAGAGCTCGTCCCCCAGGTAAGA
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Coding sequence (CDS) from alignment at H-elongata_contig189166:808..930-

>mRNA_H-elongata_contig189166.5193.1 ID=mRNA_H-elongata_contig189166.5193.1|Name=mRNA_H-elongata_contig189166.5193.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=246bp|location=Sequence derived from alignment at H-elongata_contig189166:808..930- (Himanthalia elongata Himel1 dioecious)
ATAAAAGGGCGGTGCTTGGTCTTCGACGACTGCTACGAGCATGAGGTGTG
GAACAGGACCGAAGGCGAACGGGTGCTACTGCTGTTCGACCTCTGGCACC
CAGAGCTCGTCCCCCAGGTAAGAATAAAAGGGCGGTGCTTGGTCTTCGAC
GACTGCTACGAGCATGAGGTGTGGAACAGGACCGAAGGCGAACGGGTGCT
ACTGCTGTTCGACCTCTGGCACCCAGAGCTCGTCCCCCAGGTAAGA
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