prot_H-elongata_contig18889.5183.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig18889.5183.1
Unique Nameprot_H-elongata_contig18889.5183.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length65
Homology
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BLAST of mRNA_H-elongata_contig18889.5183.1 vs. uniprot
Match: D8LDH4_ECTSI (HIG1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDH4_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.470e-14
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 0 
Query:    1 MRGRVVAQGFTVIVMFAGLVIAGRPEVKRQTMEDKMEAVKRQPNNWSSLPTATA 54
            MRGRVVAQGFT++VM AG  +AG PE+ RQT+E KMEA+ +Q N WS +P  TA
Sbjct:   55 MRGRVVAQGFTILVMTAGFYMAGPPEMTRQTVEGKMEAISKQTNRWSGVPPPTA 108
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18889.5183.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDH4_ECTSI1.470e-1462.96HIG1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 24..64
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..23
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..22
score: 0.73
NoneNo IPR availableTMHMMTMhelixcoord: 5..22

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18889contigH-elongata_contig18889:1548..2144 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18889.5183.1mRNA_H-elongata_contig18889.5183.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig18889 502..2193 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig18889.5183.1 ID=prot_H-elongata_contig18889.5183.1|Name=mRNA_H-elongata_contig18889.5183.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
MRGRVVAQGFTVIVMFAGLVIAGRPEVKRQTMEDKMEAVKRQPNNWSSLP
TATATPATEETPNK*
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