mRNA_H-elongata_contig18889.5183.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18889.5183.1
Unique NamemRNA_H-elongata_contig18889.5183.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18889.5183.1 vs. uniprot
Match: D8LDH4_ECTSI (HIG1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDH4_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 2.860e-22
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 2 
Query:    2 GIYSFKKGNKHLSQKLMRGRVVAQGFTVIVMFAGLVIAGRPEVKRQTMEDKMEAVKRQPNNWSSLPTATA 211
            GIYSFK+GNK LSQKLMRGRVVAQGFT++VM AG  +AG PE+ RQT+E KMEA+ +Q N WS +P  TA
Sbjct:   39 GIYSFKQGNKQLSQKLMRGRVVAQGFTILVMTAGFYMAGPPEMTRQTVEGKMEAISKQTNRWSGVPPPTA 108
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BLAST of mRNA_H-elongata_contig18889.5183.1 vs. uniprot
Match: A0A7S2W6B4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W6B4_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.120e-6
Identity = 31/61 (50.82%), Postives = 40/61 (65.57%), Query Frame = 2 
Query:    2 GIYSFKKGNKHLSQKLMRGRVVAQGFTVIVMFAGLVIAGRPEVKRQTMEDK---MEAVKRQ 175
            G+Y+   GNK LSQ+ MR RVVAQG TV+++  G V+ G    +RQT EDK   M+A K Q
Sbjct:   62 GLYTMLTGNKGLSQRFMRARVVAQGATVLILCTGTVMMGNQVRQRQTFEDKFLAMQAEKEQ 122
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BLAST of mRNA_H-elongata_contig18889.5183.1 vs. uniprot
Match: A0A4D9D8E5_9STRA (HIG1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8E5_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.560e-6
Identity = 22/34 (64.71%), Postives = 30/34 (88.24%), Query Frame = 2 
Query:    2 GIYSFKKGNKHLSQKLMRGRVVAQGFTVIVMFAG 103
            G+Y+FK G KHLSQ++MR RV+AQGFT++V+ AG
Sbjct:   33 GLYAFKSGEKHLSQRMMRARVLAQGFTIVVLMAG 66
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18889.5183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LDH4_ECTSI2.860e-2268.57HIG1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S2W6B4_9STRA1.120e-650.82Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9D8E5_9STRA2.560e-664.71HIG1 domain-containing protein n=1 Tax=Nannochloro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18889contigH-elongata_contig18889:502..2193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue8.8e-11
Seed eggNOG ortholog2880.D8LDH4
Preferred nameHIGD1B
GOsGO:0001666,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005886,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006996,GO:0007005,GO:0007154,GO:0007610,GO:0008150,GO:0008152,GO:0008535,GO:0009056,GO:0009057,GO:0009267,GO:0009605,GO:0009628,GO:0009636,GO:0009889,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010033,GO:0010468,GO:0010498,GO:0010556,GO:0010562,GO:0010604,GO:0010639,GO:0010646,GO:0010648,GO:0010821,GO:0010823,GO:0010941,GO:0016020,GO:0016021,GO:0016043,GO:0016567,GO:0016740,GO:0017004,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019787,GO:0019866,GO:0019941,GO:0022607,GO:0023051,GO:0023057,GO:0030163,GO:0030534,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031323,GO:0031325,GO:0031326,GO:0031399,GO:0031401,GO:0031667,GO:0031668,GO:0031669,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032592,GO:0032991,GO:0033043,GO:0033108,GO:0033554,GO:0033617,GO:0033674,GO:0034622,GO:0036211,GO:0036293,GO:0036294,GO:0042149,GO:0042221,GO:0042325,GO:0042327,GO:0042493,GO:0042592,GO:0042594,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043549,GO:0043618,GO:0043620,GO:0043632,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045471,GO:0045859,GO:0045860,GO:0045937,GO:0046677,GO:0048149,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048878,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051338,GO:0051347,GO:0051603,GO:0051716,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0060255,GO:0060548,GO:0061418,GO:0061630,GO:0061659,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070482,GO:0070647,GO:0070887,GO:0071453,GO:0071456,GO:0071496,GO:0071704,GO:0071840,GO:0071900,GO:0071902,GO:0071944,GO:0080090,GO:0090199,GO:0090201,GO:0097249,GO:0097250,GO:0097305,GO:0098573,GO:0098771,GO:0098796,GO:0098798,GO:0098800,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1903506,GO:2000112,GO:2001141,GO:2001233,GO:2001234
EggNOG free text desc.mitochondrial respiratory chain supercomplex assembly
EggNOG OGsKOG4431@1,KOG4431@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHypoxia induced protein, domain
Ec32 orthologEc-15_000600.1
Exons2
Model size1290
Cds size195
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18889.5183.1prot_H-elongata_contig18889.5183.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18889 1548..2144 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930080.2142107-UTR-H-elongata_contig18889:501..15471622930080.2142107-UTR-H-elongata_contig18889:501..1547Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18889 502..1547 -
1691679273.0529106-UTR-H-elongata_contig18889:501..15471691679273.0529106-UTR-H-elongata_contig18889:501..1547Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18889 502..1547 -
1622930080.256888-UTR-H-elongata_contig18889:2144..21931622930080.256888-UTR-H-elongata_contig18889:2144..2193Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18889 2145..2193 -
1691679273.111605-UTR-H-elongata_contig18889:2144..21931691679273.111605-UTR-H-elongata_contig18889:2144..2193Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18889 2145..2193 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930080.2267172-CDS-H-elongata_contig18889:1547..16641622930080.2267172-CDS-H-elongata_contig18889:1547..1664Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18889 1548..1664 -
1691679273.0786495-CDS-H-elongata_contig18889:1547..16641691679273.0786495-CDS-H-elongata_contig18889:1547..1664Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18889 1548..1664 -
1622930080.2432158-CDS-H-elongata_contig18889:2066..21441622930080.2432158-CDS-H-elongata_contig18889:2066..2144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18889 2067..2144 -
1691679273.0922437-CDS-H-elongata_contig18889:2066..21441691679273.0922437-CDS-H-elongata_contig18889:2066..2144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18889 2067..2144 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18889.5183.1

>prot_H-elongata_contig18889.5183.1 ID=prot_H-elongata_contig18889.5183.1|Name=mRNA_H-elongata_contig18889.5183.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
MRGRVVAQGFTVIVMFAGLVIAGRPEVKRQTMEDKMEAVKRQPNNWSSLP
TATATPATEETPNK*
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mRNA from alignment at H-elongata_contig18889:502..2193-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18889.5183.1 ID=mRNA_H-elongata_contig18889.5183.1|Name=mRNA_H-elongata_contig18889.5183.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1692bp|location=Sequence derived from alignment at H-elongata_contig18889:502..2193- (Himanthalia elongata Himel1 dioecious)
AGGAATCTACTCTTTTAAGAAGGGCAACAAGCACCTTTCGCAGAAGCTCA
TGCGCGGGCGAGTCGTGGCGCAAGGATTTACGGTGATAGTGATGTTCGCG
GGGCTTGTCATTGCCGGTAGACCAGAGGTGAGCGCTATGATAGGGATTGC
TCAGCCCTAGAGCGCGCAAAGCGTCAAGCGGGGGTGTGCATGGTTATCTG
TTGTGGCGCCAGGGAAGGAACAGGCTTCGCGATCCGGCAAGCCAGTTTGG
TGTTTGCGTCTCTTTGTTATTAACATACAAAACAGAGGGTACTACCGCCA
GGCAAGCCGGGGGGGGGGGGCGTCCATACGCCACACGCTTACGGCGTGTG
ATCAAATCCGTGCAATGTCTGCTTGCGGAATCGAGTATGGAACGTCCTGG
GCACGTTGGATTTCTACAACCATGTTTGAGACGATCAATTTCAGACCAGG
CTGAGCAGGCGTATTCCCCCCCCCACCCCCCCCTTCTCTTGCAATGTTGC
TGGATGTCCTCGACGGCGACCATGCGAAGGTTAAGAGGCAAACCATGGAA
GACAAGATGGAGGCCGTCAAGAGGCAGCCGAACAACTGGTCGAGCTTGCC
AACAGCCACCGCGACCCCAGCCACAGAGGAAACTCCCAATAAATGATTCC
TAGCTTCCTAGGTTGCATCATCGCCGGCTGACGCCTTCGTAATTCATTCT
GGTCTGGTTTCTTTACTCGGTTATTGCGCGCCTTATAGTCGAGGGTAAGG
TGGGGGGGCATAACGAGGCGAGAAACGGAGTCAGCCAGGGCGCACCGGGG
GGGTGTCTCGGTTAAGCCACGTCGCAAACGTAGGCACGGCGAAGGCGAGG
TTTGGATAGCATCCCCTGCTCTTCTTCGCTAGCCCTGTCAACGTTTACGT
ACATTCTGGGCGTTGTTATATAGTTTCGATTTTTGCTTTTATTTATGTCT
TGTAGCGTGATTGTTCAGCTTGGGACAAAAGCGAGCGCAAACTTGTCAGG
ATAGAGAGACCGACTTGTCGTTTTTATTTTTCGCGTTTTGAATTCTGCAT
GAAACCGCGAGGCGTTACCCCCCTGGGGTAAGGGGACAGGGGGAAGACAA
CATATATTACGAGGCGTTTTGGCTTTAGGGTGAGAAACCGTCCCGTTGGT
ACGAAGGCGATGAGACGAACCACCAGACGAAAGTCGCTCGGAAGCGAATC
ACGAGGGCAATGCAACCGAGCTAATATGTAGAAAAGCATTGCAGTTTTTT
GTTGTTGTTGTGTGTGTGTGTTATATTTTATTCGCAAGCACCATCCATGG
CGGCAGTAGCTGATGATGGACTTGATCCCCCTGGTTTTCAACTCCCTAGC
TAGGTATAAACGCGGTTTAGATATTCGAATTGCGCTGTAATTTGTAGATC
CCCCCGACTTCTCTTATAATGAGCCACTCTTTTTGGAACGGGGGGAAGTT
GGCGAGTGTACAAAACTTCGAATTTCACGTCGTAAGCGAGAGGTCATTGT
GGGGGCAAAACCCCGACGGATTGAGTAGTTAGGACTTTCCTCAAGTCTCT
TGACAAAAACCAAGGTAGCCACGGCTCGTGCCCGTGTTCTGTCTAGTTTT
GATTTAGTTACAGAAAACAACATCCATCATTCGTATTAATCTATAGCACC
ACCGAAGATGTAGTAATTATTAAAACCCATCACATTTTTATT
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Coding sequence (CDS) from alignment at H-elongata_contig18889:502..2193-

>mRNA_H-elongata_contig18889.5183.1 ID=mRNA_H-elongata_contig18889.5183.1|Name=mRNA_H-elongata_contig18889.5183.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig18889:502..2193- (Himanthalia elongata Himel1 dioecious)
ATGCGCGGGCGAGTCGTGGCGCAAGGATTTACGGTGATAGTGATGTTCGC
GGGGCTTGTCATTGCCGGTAGACCAGAGATGCGCGGGCGAGTCGTGGCGC
AAGGATTTACGGTGATAGTGATGTTCGCGGGGCTTGTCATTGCCGGTAGA
CCAGAGGTTAAGAGGCAAACCATGGAAGACAAGATGGAGGCCGTCAAGAG
GCAGCCGAACAACTGGTCGAGCTTGCCAACAGCCACCGCGACCCCAGCCA
CAGAGGAAACTCCCAATAAATGAGTTAAGAGGCAAACCATGGAAGACAAG
ATGGAGGCCGTCAAGAGGCAGCCGAACAACTGGTCGAGCTTGCCAACAGC
CACCGCGACCCCAGCCACAGAGGAAACTCCCAATAAATGA
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