mRNA_H-elongata_contig188721.5177.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig188721.5177.1
Unique NamemRNA_H-elongata_contig188721.5177.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig188721.5177.1 vs. uniprot
Match: D7FSX8_ECTSI (Ubiquitin carboxyl-terminal hydrolase 64E n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSX8_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 7.190e-6
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 2 
Query:    2 SPISILDLENSFSGAETAYLLIYRSRMLDEEA 97
            +PISI DL+  F GAETAYLLIYRSR LD+EA
Sbjct:  757 TPISIRDLQKPFEGAETAYLLIYRSRSLDQEA 788
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig188721.5177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSX8_ECTSI7.190e-675.00Ubiquitin carboxyl-terminal hydrolase 64E n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig188721contigH-elongata_contig188721:447..1204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size172
Cds size171
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930079.739375-CDS-H-elongata_contig188721:446..5241622930079.739375-CDS-H-elongata_contig188721:446..524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188721 447..524 +
1691679272.823404-CDS-H-elongata_contig188721:446..5241691679272.823404-CDS-H-elongata_contig188721:446..524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188721 447..524 +
1622930079.7509782-CDS-H-elongata_contig188721:1111..12041622930079.7509782-CDS-H-elongata_contig188721:1111..1204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188721 1112..1204 +
1691679272.8313274-CDS-H-elongata_contig188721:1111..12041691679272.8313274-CDS-H-elongata_contig188721:1111..1204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188721 1112..1204 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig188721.5177.1prot_H-elongata_contig188721.5177.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig188721 447..1204 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig188721.5177.1

>prot_H-elongata_contig188721.5177.1 ID=prot_H-elongata_contig188721.5177.1|Name=mRNA_H-elongata_contig188721.5177.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
VANFHPGSREFLLRRGNRLLTHIQIQDARRGSSSGPHEHSEEGGGRCARL
ICYRQP*
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mRNA from alignment at H-elongata_contig188721:447..1204+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig188721.5177.1 ID=mRNA_H-elongata_contig188721.5177.1|Name=mRNA_H-elongata_contig188721.5177.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=758bp|location=Sequence derived from alignment at H-elongata_contig188721:447..1204+ (Himanthalia elongata Himel1 dioecious)
GTCGCCAATTTCCATCCTGGATCTCGAGAATTCCTTCTCCGGCGCGGAAA
CCGCCTACTTACTCATATACAGATCCAGGTGACCTCATTTCCCTTCCTTT
CTTCTTCAATATATTTTTTCCCCCACCTTCTTCCCCCTGTGTGTATCGTT
GGACCACTGGAGCTGTTGCTTGTTCAAGCCAAGACTTTCCGTAACTGTCT
GTGCCTTCAGTCACTGAAGCGGTTTGATTGGTTTGTTTTTGTAGTTGTTT
GGGTTTGTTTGGTCGCCATGTCTTCCGACACAATACTATACTATACTATA
CTATACTATACTTTACTACACTGTGTGGTCATCACATCATACATAGCAAC
GAAATATCTCAGCTCAGCTCCGAAACAATACACGCCCAAAAATATACCGC
CTAGTCTAGTCTCGGCTAGTCTAGCAATAGCAATAGCAACCTACGAACGA
AACGGGTCGCCTAAAACATGGAGAGCTGAAGGTAGTGAAGGTATTGGCTT
ACGTAATACCTACAAGTGAAAAAAATCACCTCTTTGGGCACACCACCTCT
TAAGGTACTACTAATACGACGAATCCAGTATACATCATACATTAGTAGTA
CCGCCCTTTCGCCGCTACTCCCATCCATCCCATTAACATGTTAACATTAA
TATTAACGCTAACAGGATGCTCGACGAGGAAGCTCCTCTGGTCCCCATGA
GCACAGTGAGGAAGGAGGAGGGAGGTGCGCCCGCCTTATCTGTTACCGGC
AACCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig188721:447..1204+

>mRNA_H-elongata_contig188721.5177.1 ID=mRNA_H-elongata_contig188721.5177.1|Name=mRNA_H-elongata_contig188721.5177.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig188721:447..1204+ (Himanthalia elongata Himel1 dioecious)
GTCGCCAATTTCCATCCTGGATCTCGAGAATTCCTTCTCCGGCGCGGAAA
CCGCCTACTTACTCATATACAGATCCAGGTCGCCAATTTCCATCCTGGAT
CTCGAGAATTCCTTCTCCGGCGCGGAAACCGCCTACTTACTCATATACAG
ATCCAGGATGCTCGACGAGGAAGCTCCTCTGGTCCCCATGAGCACAGTGA
GGAAGGAGGAGGGAGGTGCGCCCGCCTTATCTGTTACCGGCAACCTTGAG
ATGCTCGACGAGGAAGCTCCTCTGGTCCCCATGAGCACAGTGAGGAAGGA
GGAGGGAGGTGCGCCCGCCTTATCTGTTACCGGCAACCTTGA
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