mRNA_H-elongata_contig18865.5173.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18865.5173.1
Unique NamemRNA_H-elongata_contig18865.5173.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18865.5173.1 vs. uniprot
Match: A0A6H5JQV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQV6_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 7.210e-11
Identity = 33/46 (71.74%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:  202 RPEACMNGELELPLSNDVNTPFAAKQWRFSPKERLMIRIEMQQSLD 339
            R  ACMNGELELPL N+  TPFAAKQ RFSP+ER MIR E+QQ +D
Sbjct:  136 RVPACMNGELELPLINEFCTPFAAKQRRFSPEERRMIRAEIQQLVD 181
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BLAST of mRNA_H-elongata_contig18865.5173.1 vs. uniprot
Match: A0A6H5J659_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J659_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 7.300e-11
Identity = 33/46 (71.74%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:  202 RPEACMNGELELPLSNDVNTPFAAKQWRFSPKERLMIRIEMQQSLD 339
            R  ACMNGELELPL N+  TPFAAKQ RFSP+ER MIR E+QQ +D
Sbjct:  189 RVPACMNGELELPLINEFCTPFAAKQRRFSPEERRMIRAEIQQLVD 234
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BLAST of mRNA_H-elongata_contig18865.5173.1 vs. uniprot
Match: A0A6H5KFK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFK7_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 7.430e-11
Identity = 33/46 (71.74%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:  202 RPEACMNGELELPLSNDVNTPFAAKQWRFSPKERLMIRIEMQQSLD 339
            R  ACMNGELELPL N+  TPFAAKQ RFSP+ER MIR E+QQ +D
Sbjct:  138 RVPACMNGELELPLINEFCTPFAAKQRRFSPEERRMIRAEIQQLVD 183
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BLAST of mRNA_H-elongata_contig18865.5173.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 7.640e-11
Identity = 33/46 (71.74%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:  202 RPEACMNGELELPLSNDVNTPFAAKQWRFSPKERLMIRIEMQQSLD 339
            R  ACMNGELELPL N+  TPFAAKQ RFSP+ER MIR E+QQ +D
Sbjct:  660 RVPACMNGELELPLINEFCTPFAAKQRRFSPEERRMIRAEIQQLVD 705
[Close]
BLAST of mRNA_H-elongata_contig18865.5173.1 vs. uniprot
Match: A0A6H5JG19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG19_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.390e-9
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:  202 RPEACMNGELELPLSNDVNTPFAAKQWRFSPKERLMIRIEMQQSLD 339
            R  AC+NGEL+LPL N+  TPFAAKQ RFSP+ER MIR E+QQ +D
Sbjct:  296 RVPACINGELKLPLINECCTPFAAKQRRFSPEERHMIRSEIQQLVD 341
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BLAST of mRNA_H-elongata_contig18865.5173.1 vs. uniprot
Match: A0A6H5KIS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIS6_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 7.300e-9
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:  217 MNGELELPLSNDVNTPFAAKQWRFSPKERLMIRIEMQQSLD 339
            MNGELELPL N+  TPFAAKQ RFSP+ER MIR E+QQ +D
Sbjct:    1 MNGELELPLINEFCTPFAAKQRRFSPEERRMIRAEIQQLVD 41
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BLAST of mRNA_H-elongata_contig18865.5173.1 vs. uniprot
Match: A0A6H5L7I8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7I8_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 4.850e-8
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:  202 RPEACMNGELELPLSNDVNTPFAAKQWRFSPKERLMIRIEMQQSLD 339
            R  AC+NGE ELPL N+  TPFAAKQ RF+P  R MIR E+QQ +D
Sbjct:  157 RVPACINGEYELPLINEFCTPFAAKQRRFAPAGRRMIRAEIQQLVD 202
[Close]
BLAST of mRNA_H-elongata_contig18865.5173.1 vs. uniprot
Match: A0A6H5KAQ6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAQ6_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 5.660e-7
Identity = 29/46 (63.04%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:  202 RPEACMNGELELPLSNDVNTPFAAKQWRFSPKERLMIRIEMQQSLD 339
            R  AC   ELELPL ++  TP AAKQ RFSP+ER MIR E+QQ LD
Sbjct:  156 RVAACGGSELELPLIDEFCTPHAAKQRRFSPEERRMIRAEIQQLLD 201
[Close]
BLAST of mRNA_H-elongata_contig18865.5173.1 vs. uniprot
Match: A0A6H5KBF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF4_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.140e-6
Identity = 29/46 (63.04%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:  202 RPEACMNGELELPLSNDVNTPFAAKQWRFSPKERLMIRIEMQQSLD 339
            R  AC   ELELPL ++  TP AAKQ RFSP+ER MIR E+QQ LD
Sbjct:  298 RVAACGGTELELPLIDEFCTPHAAKQRRFSPEERRMIRAEIQQLLD 343
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18865.5173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JQV6_9PHAE7.210e-1171.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J659_9PHAE7.300e-1171.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFK7_9PHAE7.430e-1171.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KEH2_9PHAE7.640e-1171.74RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A6H5JG19_9PHAE1.390e-967.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIS6_9PHAE7.300e-973.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7I8_9PHAE4.850e-863.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAQ6_9PHAE5.660e-763.04Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KBF4_9PHAE1.140e-663.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18865contigH-elongata_contig18865:9..350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size344
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930079.2464175-CDS-H-elongata_contig18865:8..3501622930079.2464175-CDS-H-elongata_contig18865:8..350Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18865 9..350 +
1691679272.7749135-CDS-H-elongata_contig18865:8..3501691679272.7749135-CDS-H-elongata_contig18865:8..350Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18865 9..350 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18865.5173.1prot_H-elongata_contig18865.5173.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18865 9..350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18865.5173.1

>prot_H-elongata_contig18865.5173.1 ID=prot_H-elongata_contig18865.5173.1|Name=mRNA_H-elongata_contig18865.5173.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
DGSAESVSRDQIFRCERGQGKIIFPVQLTTSRRQPYPVDLLLKVRPTYTQ
RRTHYPTSLDQGWHVSHRPEACMNGELELPLSNDVNTPFAAKQWRFSPKE
RLMIRIEMQQSLDQ
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mRNA from alignment at H-elongata_contig18865:9..350+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18865.5173.1 ID=mRNA_H-elongata_contig18865.5173.1|Name=mRNA_H-elongata_contig18865.5173.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=342bp|location=Sequence derived from alignment at H-elongata_contig18865:9..350+ (Himanthalia elongata Himel1 dioecious)
GACGGGAGTGCTGAATCCGTCTCGCGAGACCAAATTTTCAGGTGCGAACG
GGGACAGGGGAAAATTATTTTCCCTGTTCAGCTGACTACGAGCAGAAGGC
AACCATATCCGGTTGATCTTCTGCTAAAAGTGCGACCAACATACACACAA
CGCAGGACCCACTACCCCACGAGTTTGGATCAAGGATGGCATGTTTCCCA
TCGACCCGAAGCTTGCATGAACGGTGAGCTAGAACTCCCCTTGAGCAACG
ATGTTAACACTCCTTTCGCAGCCAAGCAATGGCGTTTCTCTCCGAAAGAA
CGACTAATGATCAGAATCGAGATGCAGCAATCGCTTGACCAA
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Coding sequence (CDS) from alignment at H-elongata_contig18865:9..350+

>mRNA_H-elongata_contig18865.5173.1 ID=mRNA_H-elongata_contig18865.5173.1|Name=mRNA_H-elongata_contig18865.5173.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig18865:9..350+ (Himanthalia elongata Himel1 dioecious)
GACGGGAGTGCTGAATCCGTCTCGCGAGACCAAATTTTCAGGTGCGAACG
GGGACAGGGGAAAATTATTTTCCCTGTTCAGCTGACTACGAGCAGAAGGC
AACCATATCCGGTTGATCTTCTGCTAAAAGTGCGACCAACATACACACAA
CGCAGGACCCACTACCCCACGAGTTTGGATCAAGGATGGCATGTTTCCCA
TCGACCCGAAGCTTGCATGAACGGTGAGCTAGAACTCCCCTTGAGCAACG
ATGTTAACACTCCTTTCGCAGCCAAGCAATGGCGTTTCTCTCCGAAAGAA
CGACTAATGATCAGAATCGAGATGCAGCAATCGCTTGACCAAGACGGGAG
TGCTGAATCCGTCTCGCGAGACCAAATTTTCAGGTGCGAACGGGGACAGG
GGAAAATTATTTTCCCTGTTCAGCTGACTACGAGCAGAAGGCAACCATAT
CCGGTTGATCTTCTGCTAAAAGTGCGACCAACATACACACAACGCAGGAC
CCACTACCCCACGAGTTTGGATCAAGGATGGCATGTTTCCCATCGACCCG
AAGCTTGCATGAACGGTGAGCTAGAACTCCCCTTGAGCAACGATGTTAAC
ACTCCTTTCGCAGCCAAGCAATGGCGTTTCTCTCCGAAAGAACGACTAAT
GATCAGAATCGAGATGCAGCAATCGCTTGACCAA
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