mRNA_H-elongata_contig18856.5163.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18856.5163.1
Unique NamemRNA_H-elongata_contig18856.5163.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18856.5163.1 vs. uniprot
Match: A0A6H5KIQ9_9PHAE (Glucosidase 2 subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ9_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 4.090e-20
Identity = 47/82 (57.32%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:    1 AVELIHANIAADDYVSPATGVGRQEAAKFIAARESGIFLCGESHAA-----LSWVKVNDDFCDCP-DGSDEPGTSACSQGMF 228
            AV LI  N A D++  PA+GVGR++AA+F AAR +G  +C  S  A     +SW K+ND+FCDCP DGSDEPGTSACS G+F
Sbjct:   47 AVALIRENAAGDEFTPPASGVGRRDAARFTAARAAGKLVCTSSSEAGGSTEISWDKINDNFCDCPHDGSDEPGTSACSNGVF 128
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BLAST of mRNA_H-elongata_contig18856.5163.1 vs. uniprot
Match: D7G0Y2_ECTSI (Glucosidase 2 subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y2_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.040e-19
Identity = 46/82 (56.10%), Postives = 58/82 (70.73%), Query Frame = 1 
Query:    1 AVELIHANIAADDYVSPATGVGRQEAAKFIAARESGIFLCG-----ESHAALSWVKVNDDFCDCP-DGSDEPGTSACSQGMF 228
            AV LI  N A D++  PA+GVGR++AA+F AAR +G  +C      E    +SW K+ND+FCDCP DGSDEPGTSACS G+F
Sbjct:   37 AVALIRENAAGDEFTPPASGVGRRDAARFAAARAAGKLVCTSSSGEEGSTEISWDKINDNFCDCPHDGSDEPGTSACSNGVF 118
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BLAST of mRNA_H-elongata_contig18856.5163.1 vs. uniprot
Match: A0A4E0QSY9_FASHE (Glucosidase 2 subunit beta n=1 Tax=Fasciola hepatica TaxID=6192 RepID=A0A4E0QSY9_FASHE)

HSP 1 Score: 69.7 bits (169), Expect = 5.180e-13
Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:  112 FLCGESHAALSWVKVNDDFCDCPDGSDEPGTSACSQGMFIALDPHLKAI 258
            F C  +  ++ W KVNDD+CDCPDGSDEPGTSAC+ G+F   D   K +
Sbjct:   13 FRCIGNSLSIPWTKVNDDYCDCPDGSDEPGTSACNNGLFFCRDVQYKVV 61
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BLAST of mRNA_H-elongata_contig18856.5163.1 vs. uniprot
Match: C1L6G9_SCHJA (Putative Glucosidase II beta subunit n=1 Tax=Schistosoma japonicum TaxID=6182 RepID=C1L6G9_SCHJA)

HSP 1 Score: 68.6 bits (166), Expect = 8.560e-12
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:  109 IFLCGESHAALSWVKVNDDFCDCPDGSDEPGTSACSQGMFIALDPHLKAI 258
            +F C +  +A+SW+KVNDD+CDC DGSDEPGTSAC  G F   D   + +
Sbjct:   40 LFTCLDGSSAVSWLKVNDDYCDCRDGSDEPGTSACLNGRFFCRDMQYRPV 89
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BLAST of mRNA_H-elongata_contig18856.5163.1 vs. uniprot
Match: A0A183S1S9_9TREM (PRKCSH-like domain-containing protein n=1 Tax=Schistosoma rodhaini TaxID=6188 RepID=A0A183S1S9_9TREM)

HSP 1 Score: 65.1 bits (157), Expect = 9.200e-12
Identity = 26/49 (53.06%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:  112 FLCGESHAALSWVKVNDDFCDCPDGSDEPGTSACSQGMFIALDPHLKAI 258
            F C +  +A+SW +VNDD+CDC DGSDEPGTSAC  G F   D   + +
Sbjct:   41 FTCLDGSSAISWWQVNDDYCDCRDGSDEPGTSACLNGRFFCRDMQYRPV 89
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BLAST of mRNA_H-elongata_contig18856.5163.1 vs. uniprot
Match: A0A504YAA2_FASGI (Glucosidase 2 subunit beta n=1 Tax=Fasciola gigantica TaxID=46835 RepID=A0A504YAA2_FASGI)

HSP 1 Score: 68.9 bits (167), Expect = 9.870e-12
Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:  112 FLCGESHAALSWVKVNDDFCDCPDGSDEPGTSACSQGMFIALDPHLKAI 258
            F C  +  ++ W KVNDD+CDCPDGSDEPGTSAC+ G+F   D   K +
Sbjct:   15 FRCIGNSLSIPWSKVNDDYCDCPDGSDEPGTSACNNGLFFCRDVQYKVV 63
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BLAST of mRNA_H-elongata_contig18856.5163.1 vs. uniprot
Match: C1L6G8_SCHJA (Glucosidase 2 subunit beta n=5 Tax=Schistosoma japonicum TaxID=6182 RepID=C1L6G8_SCHJA)

HSP 1 Score: 68.6 bits (166), Expect = 1.290e-11
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:  109 IFLCGESHAALSWVKVNDDFCDCPDGSDEPGTSACSQGMFIALDPHLKAI 258
            +F C +  +A+SW+KVNDD+CDC DGSDEPGTSAC  G F   D   + +
Sbjct:   40 LFTCLDGSSAVSWLKVNDDYCDCRDGSDEPGTSACLNGRFFCRDMQYRPV 89
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BLAST of mRNA_H-elongata_contig18856.5163.1 vs. uniprot
Match: A0A1V2LE37_CYBFA (Glucosidase 2 subunit beta n=2 Tax=Cyberlindnera fabianii TaxID=36022 RepID=A0A1V2LE37_CYBFA)

HSP 1 Score: 66.6 bits (161), Expect = 6.450e-11
Identity = 32/58 (55.17%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   58 GVGRQEAAKFIAARESGIFLC-GESHAALSWVKVNDDFCDCPDGSDEPGTSACSQGMF 228
            GV  Q+A K++   E G + C G     L W +VNDDFCDCPDGSDEPG+SAC  G F
Sbjct:   28 GVSPQDAEKYVP-NEQGKWACLGNPEIILDWNQVNDDFCDCPDGSDEPGSSACPNGKF 84
[Close]
BLAST of mRNA_H-elongata_contig18856.5163.1 vs. uniprot
Match: A0A183KG83_9TREM (PRKCSH-like domain-containing protein n=1 Tax=Schistosoma curassoni TaxID=6186 RepID=A0A183KG83_9TREM)

HSP 1 Score: 63.2 bits (152), Expect = 8.090e-11
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:  112 FLCGESHAALSWVKVNDDFCDCPDGSDEPGTSACSQGMFIALDPHLKAI 258
            F C +  +A+ W +VNDD+CDC DGSDEPGTSAC  G F   D   + +
Sbjct:   41 FTCLDGSSAIPWWQVNDDYCDCRDGSDEPGTSACLNGRFFCRDMQYRPV 89
[Close]
BLAST of mRNA_H-elongata_contig18856.5163.1 vs. uniprot
Match: A0A094ZIS7_SCHHA (Glucosidase 2 subunit beta n=1 Tax=Schistosoma haematobium TaxID=6185 RepID=A0A094ZIS7_SCHHA)

HSP 1 Score: 63.2 bits (152), Expect = 8.280e-11
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:  112 FLCGESHAALSWVKVNDDFCDCPDGSDEPGTSACSQGMFIALDPHLKAI 258
            F C +  +A+ W +VNDD+CDC DGSDEPGTSAC  G F   D   + +
Sbjct:   41 FTCLDGSSAIPWWQVNDDYCDCRDGSDEPGTSACLNGRFFCRDMQYRPV 89
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18856.5163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KIQ9_9PHAE4.090e-2057.32Glucosidase 2 subunit beta n=1 Tax=Ectocarpus sp. ... [more]
D7G0Y2_ECTSI1.040e-1956.10Glucosidase 2 subunit beta n=1 Tax=Ectocarpus sili... [more]
A0A4E0QSY9_FASHE5.180e-1355.10Glucosidase 2 subunit beta n=1 Tax=Fasciola hepati... [more]
C1L6G9_SCHJA8.560e-1254.00Putative Glucosidase II beta subunit n=1 Tax=Schis... [more]
A0A183S1S9_9TREM9.200e-1253.06PRKCSH-like domain-containing protein n=1 Tax=Schi... [more]
A0A504YAA2_FASGI9.870e-1255.10Glucosidase 2 subunit beta n=1 Tax=Fasciola gigant... [more]
C1L6G8_SCHJA1.290e-1154.00Glucosidase 2 subunit beta n=5 Tax=Schistosoma jap... [more]
A0A1V2LE37_CYBFA6.450e-1155.17Glucosidase 2 subunit beta n=2 Tax=Cyberlindnera f... [more]
A0A183KG83_9TREM8.090e-1151.02PRKCSH-like domain-containing protein n=1 Tax=Schi... [more]
A0A094ZIS7_SCHHA8.280e-1151.02Glucosidase 2 subunit beta n=1 Tax=Schistosoma hae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18856contigH-elongata_contig18856:6719..6976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score65.5
Seed ortholog evalue1.4e-08
Seed eggNOG ortholog6183.Smp_131400.1
Preferred namePRKCSH
KEGG koko:K08288
KEGG Pathwayko04141,map04141
GOsGO:0001655,GO:0001701,GO:0001889,GO:0003674,GO:0003676,GO:0003723,GO:0005080,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0006464,GO:0006491,GO:0006807,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0009100,GO:0009790,GO:0009792,GO:0009987,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0016043,GO:0017177,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0022008,GO:0022607,GO:0023052,GO:0030154,GO:0031344,GO:0031345,GO:0031974,GO:0032501,GO:0032502,GO:0032991,GO:0035556,GO:0036211,GO:0043009,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044325,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0046872,GO:0048513,GO:0048519,GO:0048523,GO:0048699,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051219,GO:0051239,GO:0051241,GO:0051259,GO:0051291,GO:0051716,GO:0051960,GO:0051961,GO:0060284,GO:0061008,GO:0065003,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0072001,GO:0097159,GO:0120035,GO:1901135,GO:1901363,GO:1901564,GO:2000026
EggNOG free text desc.N-glycan processing
EggNOG OGs38EUH@33154,3BAI0@33208,3CWAX@33213,KOG2397@1,KOG2397@2759
COG Functional cat.T
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04091
Hectar predicted targeting categoryother localisation
Exons1
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930078.6379266-CDS-H-elongata_contig18856:6718..69761622930078.6379266-CDS-H-elongata_contig18856:6718..6976Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18856 6719..6976 +
1691679272.5568054-CDS-H-elongata_contig18856:6718..69761691679272.5568054-CDS-H-elongata_contig18856:6718..6976Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18856 6719..6976 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18856.5163.1prot_H-elongata_contig18856.5163.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18856 6719..6976 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18856.5163.1

>prot_H-elongata_contig18856.5163.1 ID=prot_H-elongata_contig18856.5163.1|Name=mRNA_H-elongata_contig18856.5163.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
AVELIHANIAADDYVSPATGVGRQEAAKFIAARESGIFLCGESHAALSWV
KVNDDFCDCPDGSDEPGTSACSQGMFIALDPHLKAI
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mRNA from alignment at H-elongata_contig18856:6719..6976+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18856.5163.1 ID=mRNA_H-elongata_contig18856.5163.1|Name=mRNA_H-elongata_contig18856.5163.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=258bp|location=Sequence derived from alignment at H-elongata_contig18856:6719..6976+ (Himanthalia elongata Himel1 dioecious)
GCTGTAGAGCTGATACATGCTAATATTGCGGCAGATGATTACGTCTCACC
AGCTACTGGAGTGGGACGGCAGGAAGCGGCTAAGTTCATTGCGGCGCGAG
AGTCTGGAATATTCTTGTGCGGAGAGTCCCATGCAGCACTGTCTTGGGTT
AAGGTCAACGACGACTTCTGCGATTGCCCCGATGGCAGCGACGAGCCAGG
CACCTCTGCCTGCAGCCAAGGCATGTTTATCGCGCTTGATCCACATCTAA
AGGCGATC
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Coding sequence (CDS) from alignment at H-elongata_contig18856:6719..6976+

>mRNA_H-elongata_contig18856.5163.1 ID=mRNA_H-elongata_contig18856.5163.1|Name=mRNA_H-elongata_contig18856.5163.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig18856:6719..6976+ (Himanthalia elongata Himel1 dioecious)
GCTGTAGAGCTGATACATGCTAATATTGCGGCAGATGATTACGTCTCACC
AGCTACTGGAGTGGGACGGCAGGAAGCGGCTAAGTTCATTGCGGCGCGAG
AGTCTGGAATATTCTTGTGCGGAGAGTCCCATGCAGCACTGTCTTGGGTT
AAGGTCAACGACGACTTCTGCGATTGCCCCGATGGCAGCGACGAGCCAGG
CACCTCTGCCTGCAGCCAAGGCATGTTTATCGCGCTTGATCCACATCTAA
AGGCGATCGCTGTAGAGCTGATACATGCTAATATTGCGGCAGATGATTAC
GTCTCACCAGCTACTGGAGTGGGACGGCAGGAAGCGGCTAAGTTCATTGC
GGCGCGAGAGTCTGGAATATTCTTGTGCGGAGAGTCCCATGCAGCACTGT
CTTGGGTTAAGGTCAACGACGACTTCTGCGATTGCCCCGATGGCAGCGAC
GAGCCAGGCACCTCTGCCTGCAGCCAAGGCATGTTTATCGCGCTTGATCC
ACATCTAAAGGCGATC
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