mRNA_H-elongata_contig188501.5161.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig188501.5161.1
Unique NamemRNA_H-elongata_contig188501.5161.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig188501.5161.1 vs. uniprot
Match: D7G4D6_ECTSI (Molybdenum cofactor sulfurase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D6_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 1.260e-22
Identity = 58/102 (56.86%), Postives = 65/102 (63.73%), Query Frame = 1 
Query:    7 MCKIRPFVDLRGGTLTVSAPGMPNLVLPLNWGSSRNGPVTRDAENEDNIGAPRLFGGRTGGGGGETRGVDIPMIVRVCGNRRAGVACAASASAWFTRFLGVP 312
            MC+IRPFVDL  GTLTV+AP MP+LVLPL +               D  G  R + G    GGG+T       +VRVCGNRRAGV CAASASAWFTRFLGVP
Sbjct:  851 MCQIRPFVDLASGTLTVTAPRMPDLVLPLGYSGGGG----------DGAGDARCWRGE---GGGDT-------VVRVCGNRRAGVTCAASASAWFTRFLGVP 932
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BLAST of mRNA_H-elongata_contig188501.5161.1 vs. uniprot
Match: A0A6H5KPE6_9PHAE (Molybdenum cofactor sulfurase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPE6_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 9.190e-18
Identity = 62/135 (45.93%), Postives = 69/135 (51.11%), Query Frame = 1 
Query:    7 MCKIRPFVDLRGGTLTVSAPGMPNLVLPLNW-GSSRN--GPVTRDAENEDNIGAPRL---------------------FGGRTGGGGGET--------RGVDIP-MIVRVCGNRRAGVACAASASAWFTRFLGVP 312
            MC+IRPFVDL  GTLTV+AP MP+LVLPL + G  R   G   RD  ++   G  R                      FGG                 RG      +VRVCGNRRAGV CAASASAWFTRFLGVP
Sbjct: 1003 MCQIRPFVDLASGTLTVTAPRMPDLVLPLGYLGGERGVGGGGGRDEASDGVTGTERCCLQSPSXXXXXPGCGGVVDCRFGGNXXXXXXXXXXXXXRCWRGXXXDDTVVRVCGNRRAGVTCAASASAWFTRFLGVP 1137
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig188501.5161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4D6_ECTSI1.260e-2256.86Molybdenum cofactor sulfurase n=1 Tax=Ectocarpus s... [more]
A0A6H5KPE6_9PHAE9.190e-1845.93Molybdenum cofactor sulfurase n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig188501contigH-elongata_contig188501:185..496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue1.2e-19
Seed eggNOG ortholog2880.D7G4D6
Preferred nameABA3
KEGG koko:K15631
KEGG ReactionR11583
KEGG Pathwayko00790,map00790
GOsGO:0003674,GO:0003824,GO:0006066,GO:0006082,GO:0006464,GO:0006605,GO:0006629,GO:0006714,GO:0006720,GO:0006721,GO:0006732,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006970,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0008265,GO:0008299,GO:0008610,GO:0009000,GO:0009058,GO:0009266,GO:0009408,GO:0009409,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009651,GO:0009687,GO:0009688,GO:0009719,GO:0009725,GO:0009733,GO:0009734,GO:0009743,GO:0009755,GO:0009756,GO:0009987,GO:0010033,GO:0010118,GO:0010182,GO:0015031,GO:0015833,GO:0016053,GO:0016106,GO:0016114,GO:0016740,GO:0016782,GO:0016783,GO:0016829,GO:0016846,GO:0017038,GO:0018315,GO:0019538,GO:0019637,GO:0019752,GO:0023052,GO:0032787,GO:0032870,GO:0033036,GO:0033365,GO:0034613,GO:0036211,GO:0042040,GO:0042221,GO:0042742,GO:0042886,GO:0043170,GO:0043207,GO:0043288,GO:0043289,GO:0043412,GO:0043436,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044283,GO:0045036,GO:0045037,GO:0045184,GO:0046165,GO:0046394,GO:0046483,GO:0046907,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051186,GO:0051189,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0055085,GO:0065002,GO:0065007,GO:0070727,GO:0070887,GO:0071310,GO:0071322,GO:0071365,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0072330,GO:0072594,GO:0072596,GO:0072598,GO:0098542,GO:1901360,GO:1901564,GO:1901576,GO:1901615,GO:1901617,GO:1901700,GO:1901701,GO:1902644,GO:1902645
EggNOG free text desc.molybdenum cofactor sulfurtransferase activity
EggNOG OGsCOG0520@1,KOG2142@2759
EC2.8.1.9
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size312
Cds size306
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930078.5260756-UTR-H-elongata_contig188501:184..1901622930078.5260756-UTR-H-elongata_contig188501:184..190Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig188501 185..190 +
1691679272.4890347-UTR-H-elongata_contig188501:184..1901691679272.4890347-UTR-H-elongata_contig188501:184..190Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig188501 185..190 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930078.542092-CDS-H-elongata_contig188501:190..4961622930078.542092-CDS-H-elongata_contig188501:190..496Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188501 191..496 +
1691679272.5256877-CDS-H-elongata_contig188501:190..4961691679272.5256877-CDS-H-elongata_contig188501:190..496Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188501 191..496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig188501.5161.1prot_H-elongata_contig188501.5161.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig188501 191..496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig188501.5161.1

>prot_H-elongata_contig188501.5161.1 ID=prot_H-elongata_contig188501.5161.1|Name=mRNA_H-elongata_contig188501.5161.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
MCKIRPFVDLRGGTLTVSAPGMPNLVLPLNWGSSRNGPVTRDAENEDNIG
APRLFGGRTGGGGGETRGVDIPMIVRVCGNRRAGVACAASASAWFTRFLG
VP
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mRNA from alignment at H-elongata_contig188501:185..496+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig188501.5161.1 ID=mRNA_H-elongata_contig188501.5161.1|Name=mRNA_H-elongata_contig188501.5161.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=312bp|location=Sequence derived from alignment at H-elongata_contig188501:185..496+ (Himanthalia elongata Himel1 dioecious)
TCAACCATGTGCAAGATACGCCCGTTCGTCGATCTTCGAGGCGGCACGCT
CACCGTCTCAGCGCCGGGCATGCCCAACCTCGTTCTCCCCCTCAATTGGG
GATCTTCACGTAACGGACCGGTAACAAGAGACGCGGAAAATGAAGACAAT
ATAGGAGCACCCCGGCTATTCGGAGGTCGCACCGGTGGTGGTGGTGGCGA
AACCCGAGGCGTCGATATCCCCATGATCGTTCGCGTGTGCGGTAACAGAC
GGGCGGGCGTTGCCTGCGCCGCGTCCGCGTCCGCTTGGTTCACGCGCTTT
CTTGGCGTGCCC
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Coding sequence (CDS) from alignment at H-elongata_contig188501:185..496+

>mRNA_H-elongata_contig188501.5161.1 ID=mRNA_H-elongata_contig188501.5161.1|Name=mRNA_H-elongata_contig188501.5161.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig188501:185..496+ (Himanthalia elongata Himel1 dioecious)
ATGTGCAAGATACGCCCGTTCGTCGATCTTCGAGGCGGCACGCTCACCGT
CTCAGCGCCGGGCATGCCCAACCTCGTTCTCCCCCTCAATTGGGGATCTT
CACGTAACGGACCGGTAACAAGAGACGCGGAAAATGAAGACAATATAGGA
GCACCCCGGCTATTCGGAGGTCGCACCGGTGGTGGTGGTGGCGAAACCCG
AGGCGTCGATATCCCCATGATCGTTCGCGTGTGCGGTAACAGACGGGCGG
GCGTTGCCTGCGCCGCGTCCGCGTCCGCTTGGTTCACGCGCTTTCTTGGC
GTGCCCATGTGCAAGATACGCCCGTTCGTCGATCTTCGAGGCGGCACGCT
CACCGTCTCAGCGCCGGGCATGCCCAACCTCGTTCTCCCCCTCAATTGGG
GATCTTCACGTAACGGACCGGTAACAAGAGACGCGGAAAATGAAGACAAT
ATAGGAGCACCCCGGCTATTCGGAGGTCGCACCGGTGGTGGTGGTGGCGA
AACCCGAGGCGTCGATATCCCCATGATCGTTCGCGTGTGCGGTAACAGAC
GGGCGGGCGTTGCCTGCGCCGCGTCCGCGTCCGCTTGGTTCACGCGCTTT
CTTGGCGTGCCC
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