mRNA_H-elongata_contig18850.5159.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18850.5159.1
Unique NamemRNA_H-elongata_contig18850.5159.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18850.5159.1 vs. uniprot
Match: D7FN46_ECTSI (50S ribosomal protein L5, chloroplastic n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN46_ECTSI)

HSP 1 Score: 243 bits (621), Expect = 7.540e-76
Identity = 118/124 (95.16%), Postives = 121/124 (97.58%), Query Frame = 1 
Query:    1 ACYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFYVVLNRPGYRVAKRKEKVAKIGYQHKVTKTDAIKWFQARFEGIVTG 372
            A YTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDF+VVLNRPGYRVAKRK K AKIGYQHKVTKTDA+KWFQA+FEGIVTG
Sbjct:   50 ARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFFVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIVTG 173
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BLAST of mRNA_H-elongata_contig18850.5159.1 vs. uniprot
Match: A0A0D3AUD9_BRAOL (Uncharacterized protein n=10 Tax=Brassicaceae TaxID=3700 RepID=A0A0D3AUD9_BRAOL)

HSP 1 Score: 206 bits (524), Expect = 3.390e-61
Identity = 95/122 (77.87%), Postives = 111/122 (90.98%), Query Frame = 1 
Query:    1 ACYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFYVVLNRPGYRVAKRKEKVAKIGYQHKVTKTDAIKWFQARFEGIV 366
            A YTVRSFGIRRNEKIAC+VTVRGDKA+++LE GLKVKEYEL RKNFS+TG FGFGIQEHIDLG+KYDPSTGIYGMDFYVVL RPGYRVA+R+   A++G QH+VTK DA+KWFQ ++EG++
Sbjct:   52 ARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRKNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVI 173
[Close]
BLAST of mRNA_H-elongata_contig18850.5159.1 vs. uniprot
Match: A0A0K9NLH5_ZOSMR (60S ribosomal protein L11a n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NLH5_ZOSMR)

HSP 1 Score: 205 bits (522), Expect = 6.310e-61
Identity = 93/122 (76.23%), Postives = 111/122 (90.98%), Query Frame = 1 
Query:    1 ACYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFYVVLNRPGYRVAKRKEKVAKIGYQHKVTKTDAIKWFQARFEGIV 366
            A +TVRSFGIRRNEKIACHVTVRG+KA++++E GLKVKEYEL RKNFS+TG FGFGIQEHIDLG+KYDPSTGIYGMDFYVVL RPGYRVA+R+   A++G QH+VTK DA+KWFQ ++EG++
Sbjct:   51 ARFTVRSFGIRRNEKIACHVTVRGEKAMQLIESGLKVKEYELLRKNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRAKARVGIQHRVTKDDAMKWFQVKYEGVI 172
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BLAST of mRNA_H-elongata_contig18850.5159.1 vs. uniprot
Match: A7AQT8_BABBO (60S ribosomal protein L11, putative n=2 Tax=Babesia TaxID=5864 RepID=A7AQT8_BABBO)

HSP 1 Score: 205 bits (521), Expect = 6.630e-61
Identity = 96/120 (80.00%), Postives = 109/120 (90.83%), Query Frame = 1 
Query:    7 YTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFYVVLNRPGYRVAKRKEKVAKIGYQHKVTKTDAIKWFQARFEGIV 366
            +T+RS G+RRNEKIACHVTVRG KALE+LERGLKVKEYELK +NFSNTG+FGFGIQEHIDLGLKYDPSTGIYGMDFYV L RPGYRV KR++  +KIG QHKVTK DA+KWFQ +F+GI+
Sbjct:   50 FTIRSLGVRRNEKIACHVTVRGKKALELLERGLKVKEYELKSENFSNTGNFGFGIQEHIDLGLKYDPSTGIYGMDFYVQLIRPGYRVTKRRKCKSKIGKQHKVTKEDAMKWFQEKFDGII 169
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BLAST of mRNA_H-elongata_contig18850.5159.1 vs. uniprot
Match: A0A3P6F0I7_BRAOL (Uncharacterized protein n=4 Tax=Brassica TaxID=3705 RepID=A0A3P6F0I7_BRAOL)

HSP 1 Score: 205 bits (521), Expect = 6.850e-61
Identity = 94/122 (77.05%), Postives = 111/122 (90.98%), Query Frame = 1 
Query:    1 ACYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFYVVLNRPGYRVAKRKEKVAKIGYQHKVTKTDAIKWFQARFEGIV 366
            A YTVRSFGIRRNEKIAC+VTVRGDKA+++LE GLKVKEYEL R+NFS+TG FGFGIQEHIDLG+KYDPSTGIYGMDFYVVL RPGYRVA+R+   A++G QH+VTK DA+KWFQ ++EG++
Sbjct:   42 ARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVI 163
[Close]
BLAST of mRNA_H-elongata_contig18850.5159.1 vs. uniprot
Match: A0A7S2V4A8_9STRA (50S ribosomal protein L5, chloroplastic n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4A8_9STRA)

HSP 1 Score: 205 bits (521), Expect = 7.320e-61
Identity = 97/122 (79.51%), Postives = 110/122 (90.16%), Query Frame = 1 
Query:    1 ACYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFYVVLNRPGYRVAKRKEKVAKIGYQHKVTKTDAIKWFQARFEGIV 366
            A YTVRSFGIRRNEKIACHVTVRG+KALEILERGLKVKEYEL+R+NFS TG+FGFGIQEHIDLG+KYDPSTGIYGMDF+VVL RPG RV KRK + +++G  H++ K DAIKWFQ +FEGIV
Sbjct:   51 ARYTVRSFGIRRNEKIACHVTVRGEKALEILERGLKVKEYELRRRNFSETGNFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLRRPGNRVGKRKARQSRMGAPHRLAKDDAIKWFQQKFEGIV 172
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BLAST of mRNA_H-elongata_contig18850.5159.1 vs. uniprot
Match: A0A1S4CT55_TOBAC (60S ribosomal protein L11-1-like n=4 Tax=Nicotiana TaxID=4085 RepID=A0A1S4CT55_TOBAC)

HSP 1 Score: 204 bits (520), Expect = 1.290e-60
Identity = 94/122 (77.05%), Postives = 110/122 (90.16%), Query Frame = 1 
Query:    1 ACYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFYVVLNRPGYRVAKRKEKVAKIGYQHKVTKTDAIKWFQARFEGIV 366
            A YTVRSFGIRRNEKIAC+VTVRGDKA+++LE GLKVKEYEL R+NFS TG FGFGIQEHIDLG+KYDPSTGIYGMDFYVVL RPGYRVA+R+   A++G QH+VTK DA+KWFQ ++EG++
Sbjct:   52 ARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVI 173
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BLAST of mRNA_H-elongata_contig18850.5159.1 vs. uniprot
Match: A0A2G5ET61_AQUCA (Ribosomal_L5_C domain-containing protein n=2 Tax=Mesangiospermae TaxID=1437183 RepID=A0A2G5ET61_AQUCA)

HSP 1 Score: 202 bits (515), Expect = 1.610e-60
Identity = 93/122 (76.23%), Postives = 110/122 (90.16%), Query Frame = 1 
Query:    1 ACYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFYVVLNRPGYRVAKRKEKVAKIGYQHKVTKTDAIKWFQARFEGIV 366
            A YTVRSFGIRRNEKIAC+VTVRGDKA+++LE GLKVKEYEL R+NFS+TG FGFGIQEHIDLG+KYDPSTGIYGMDFYVVL RPGYRV +R+   ++IG QH+VTK DA+KWFQ ++EG++
Sbjct:    5 ARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVGRRRRCKSRIGIQHRVTKDDAMKWFQVKYEGVI 126
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BLAST of mRNA_H-elongata_contig18850.5159.1 vs. uniprot
Match: A0A1J3EML2_NOCCA (60S ribosomal protein L11-1 (Fragment) n=4 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3EML2_NOCCA)

HSP 1 Score: 205 bits (521), Expect = 2.260e-60
Identity = 94/122 (77.05%), Postives = 111/122 (90.98%), Query Frame = 1 
Query:    1 ACYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFYVVLNRPGYRVAKRKEKVAKIGYQHKVTKTDAIKWFQARFEGIV 366
            A YTVRSFGIRRNEKIAC+VTVRGDKA+++LE GLKVKEYEL R+NFS+TG FGFGIQEHIDLG+KYDPSTGIYGMDFYVVL RPGYRVA+R+   A++G QH+VTK DA+KWFQ ++EG++
Sbjct:   79 ARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVI 200
[Close]
BLAST of mRNA_H-elongata_contig18850.5159.1 vs. uniprot
Match: A0A0K9Q188_ZOSMR (60S ribosomal protein L11-1 n=6 Tax=Mesangiospermae TaxID=1437183 RepID=A0A0K9Q188_ZOSMR)

HSP 1 Score: 204 bits (518), Expect = 2.490e-60
Identity = 93/122 (76.23%), Postives = 111/122 (90.98%), Query Frame = 1 
Query:    1 ACYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFYVVLNRPGYRVAKRKEKVAKIGYQHKVTKTDAIKWFQARFEGIV 366
            A +TVRSFGIRRNEKIACHVTVRG+KA+++LE GLKVKEYEL RKNFS+TG FGFGIQEHIDLG+KYDPSTGIYGMDF+VVL RPGYRVA+R+   A++G QH+VTK DA+KWFQ ++EG++
Sbjct:   52 ARFTVRSFGIRRNEKIACHVTVRGEKAMQLLESGLKVKEYELLRKNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVI 173
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18850.5159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN46_ECTSI7.540e-7695.1650S ribosomal protein L5, chloroplastic n=2 Tax=Ec... [more]
A0A0D3AUD9_BRAOL3.390e-6177.87Uncharacterized protein n=10 Tax=Brassicaceae TaxI... [more]
A0A0K9NLH5_ZOSMR6.310e-6176.2360S ribosomal protein L11a n=1 Tax=Zostera marina ... [more]
A7AQT8_BABBO6.630e-6180.0060S ribosomal protein L11, putative n=2 Tax=Babesi... [more]
A0A3P6F0I7_BRAOL6.850e-6177.05Uncharacterized protein n=4 Tax=Brassica TaxID=370... [more]
A0A7S2V4A8_9STRA7.320e-6179.5150S ribosomal protein L5, chloroplastic n=1 Tax=Fi... [more]
A0A1S4CT55_TOBAC1.290e-6077.0560S ribosomal protein L11-1-like n=4 Tax=Nicotiana... [more]
A0A2G5ET61_AQUCA1.610e-6076.23Ribosomal_L5_C domain-containing protein n=2 Tax=M... [more]
A0A1J3EML2_NOCCA2.260e-6077.0560S ribosomal protein L11-1 (Fragment) n=4 Tax=Noc... [more]
A0A0K9Q188_ZOSMR2.490e-6076.2360S ribosomal protein L11-1 n=6 Tax=Mesangiosperma... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18850contigH-elongata_contig18850:32..2151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score245.0
Seed ortholog evalue1.9e-62
Seed eggNOG ortholog2880.D7FN46
Preferred nameRPL11
KEGG koko:K02868,ko:K10523,ko:K15076
KEGG Pathwayko03010,ko04340,ko04341,map03010,map04340,map04341
KEGG ModuleM00177,M00384
GOsGO:0000027,GO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0004857,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006355,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0008097,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0012505,GO:0015031,GO:0015833,GO:0015934,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0022627,GO:0023051,GO:0023056,GO:0030162,GO:0030234,GO:0030867,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031329,GO:0031330,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031625,GO:0031647,GO:0031974,GO:0031981,GO:0031984,GO:0032092,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034504,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042175,GO:0042176,GO:0042177,GO:0042254,GO:0042255,GO:0042273,GO:0042788,GO:0042886,GO:0042975,GO:0042981,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043433,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044389,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045861,GO:0046483,GO:0046700,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0051090,GO:0051098,GO:0051099,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051252,GO:0051338,GO:0051348,GO:0051438,GO:0051444,GO:0051641,GO:0051649,GO:0055105,GO:0055106,GO:0060255,GO:0061136,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070925,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098772,GO:0098827,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901796,GO:1901798,GO:1901799,GO:1902253,GO:1902255,GO:1902531,GO:1902533,GO:1903050,GO:1903051,GO:1903320,GO:1903321,GO:1903362,GO:1903363,GO:1903506,GO:1904666,GO:1904667,GO:1990904,GO:1990948,GO:2000058,GO:2000059,GO:2000112,GO:2000434,GO:2000435,GO:2001141,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0094@1,KOG0397@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03400,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L5
Ec32 orthologEc-06_008360.1
Exons4
Model size1350
Cds size375
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18850.5159.1prot_H-elongata_contig18850.5159.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18850 32..1176 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930078.277705-CDS-H-elongata_contig18850:31..941622930078.277705-CDS-H-elongata_contig18850:31..94Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18850 32..94 +
1691679272.3345714-CDS-H-elongata_contig18850:31..941691679272.3345714-CDS-H-elongata_contig18850:31..94Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18850 32..94 +
1622930078.2929618-CDS-H-elongata_contig18850:301..4521622930078.2929618-CDS-H-elongata_contig18850:301..452Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18850 302..452 +
1691679272.3474894-CDS-H-elongata_contig18850:301..4521691679272.3474894-CDS-H-elongata_contig18850:301..452Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18850 302..452 +
1622930078.3109517-CDS-H-elongata_contig18850:801..9321622930078.3109517-CDS-H-elongata_contig18850:801..932Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18850 802..932 +
1691679272.3549325-CDS-H-elongata_contig18850:801..9321691679272.3549325-CDS-H-elongata_contig18850:801..932Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18850 802..932 +
1622930078.3262537-CDS-H-elongata_contig18850:1146..11761622930078.3262537-CDS-H-elongata_contig18850:1146..1176Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18850 1147..1176 +
1691679272.3622615-CDS-H-elongata_contig18850:1146..11761691679272.3622615-CDS-H-elongata_contig18850:1146..1176Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18850 1147..1176 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930078.3382862-UTR-H-elongata_contig18850:1176..21511622930078.3382862-UTR-H-elongata_contig18850:1176..2151Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18850 1177..2151 +
1691679272.3719857-UTR-H-elongata_contig18850:1176..21511691679272.3719857-UTR-H-elongata_contig18850:1176..2151Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18850 1177..2151 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18850.5159.1

>prot_H-elongata_contig18850.5159.1 ID=prot_H-elongata_contig18850.5159.1|Name=mRNA_H-elongata_contig18850.5159.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
ACYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNT
GSFGFGIQEHIDLGLKYDPSTGIYGMDFYVVLNRPGYRVAKRKEKVAKIG
YQHKVTKTDAIKWFQARFEGIVTG*
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mRNA from alignment at H-elongata_contig18850:32..2151+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18850.5159.1 ID=mRNA_H-elongata_contig18850.5159.1|Name=mRNA_H-elongata_contig18850.5159.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2120bp|location=Sequence derived from alignment at H-elongata_contig18850:32..2151+ (Himanthalia elongata Himel1 dioecious)
GCATGCTACACGGTCCGTTCTTTTGGCATCCGCCGTAACGAGAAGATCGC
GTGCCACGTAACGGTGAGTGAATAACTTAAGTCCAGGGCCGCTTAAGCTG
TCTTTCAAAAGCAAAAATTGTATCACTCATCGCCACCGCCGTTGACGTTT
CCGTGACTCGTATCGATCTTAGCTATTTATATATTATTAGTATGGCTTTG
CTGTCGTTTGTTCCGTCAACCTTGACATCGCGGCCGGTGCGATAACGATC
GATTCCACACGGCTGGGCAGGTTCGCGGAGACAAGGCGTTAGAGATCCTT
GAGCGCGGCCTTAAAGTAAAGGAGTACGAGCTCAAGCGCAAAAATTTCTC
CAACACGGGAAGCTTTGGCTTTGGCATCCAAGAGCACATTGACCTTGGGC
TCAAGTACGACCCATCCACGGGTAAGGGCAACGCGCCTGAATTGTTTGTG
CGTTGCTTCCGACCAAACGCTCCGAGCGTATCGTCGCATGTAGATATCAC
AGACATTGAAGGACTGGTACTGGAGCTCGGCTAATACGAAAATAGTTTTT
GTCTGAAGGGAGAAAAGTCGTCTCGGTGGAGAACAACCACCGTAATAGCA
ATGTTTTCCAGTAAACCCCCTCCCCTGTCGTCTCTGGTGACTTTAATGGA
TTCCGTCGGTGCCGTTGGAGGTTCTTTTCTTTCTTGTTTGAACAGCACCA
CTTCTGGGACGATTTTAACCTTTTTTGGACATCGCCACTCACGTTGTGGT
CATGTCTCGCTCCTCTCTAGGCATCTACGGAATGGACTTCTACGTCGTGC
TTAACCGTCCAGGCTACCGCGTGGCAAAGCGCAAGGAGAAGGTGGCCAAG
ATCGGTTACCAGCACAAGGTCACCAAGACGGATGCCATCAAGTGGTTCCA
GGTAGGTCTGTGACAGGTCGCTGAGGCCACTATTTGAGACGTATCTAAAA
CGAGCGAACTTCGGTAAGCCCTTCAAGTAGAGGTGCGATTTGCCTTGGCC
TTCTACAACCTGAAAAAAAAATCCCAGCACGAAAAAAATCGCAATTATAT
TAGTTGACCGTCATAAATAATGTCGCCTTTATTTTGTTTCCTTTTTCTTG
CGTCTGCTCTCACAGGCAAGGTTTGAAGGCATCGTCACCGGCTAGGTCCT
CGTGTATTGGTCAACTTCACAGCGGCTTAGTTGCCGCGCGACTAAGCGAA
CGCACTTCCTGTCTGAAACACCGGAGTAAAAAATAAAAATAAAAAAATGT
TGTCCTTTTGATACTTGAACCTTGAAAATGTCTATCGCGATCTCCAGGCC
TGGGATATGCTGTAAAGCTTCTAATCTTTGACGCATAACTTATGTAGGGC
ACGAGAGCACCTTCACAACTATTCTACAGGAAGAGAGAACAATTCTCGGT
GTTTTAGATCAATGCTCCGCTTCGTCCTTAATAGATATTCAACAGAAATT
ACCATCATAAAAATAGAATCTGTAATTGTGTGGTAAATCGCATAAAGCAG
GAAATTGATCAACCGGGCATGGTTGTCGATCATACTCACGGTGAAGTTAT
TGCCTCCTGTCCTCATTCGTGTCTAAATATTGTGTTTTGTGATGCGGGTT
CGGCTCTCCATCCTGGTCGAATCTTGTGTGATGTGGTCATTACATATACG
CAAAGTATCTATCAACTGGGTTTGGTTGCCTCCTGCTTGTGGTCAGCTGA
ACAGGGGAAATGAATTTTCCCCATCCCGCGCGAGCCTGGTACTCTCGTTT
TCATGACGGCGTTTCTACCGTCAACTCCCATGGGTCAACATCGATTTCAC
CAGGTCATGCAATTACGTAGCGATGGCGTTCACGACCGAGAGCCTGCCGG
CACTTAGCCAGCAGTCCTGAAGATAGTTTTCTAACGGGTGCAGTCTATCC
AGGTAACCCCGTGTGTGACCCAACAACATGGACCAGTTATTGTGTACGTT
TCTTTTTCTAAACCAAATTGAACTACGGTGGAATGGTCATCACGTATAGC
AGAGTAAGATCAACAATATTTGCTTACCTCCTGCTCGTGGTCAGCTGAAC
AGAGAAAATAATCTACCCGTTCGCGACTGAGACTTTGGTCTCGCGAGACG
AGTTCAGCAGTCCAGTTTCG
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Coding sequence (CDS) from alignment at H-elongata_contig18850:32..2151+

>mRNA_H-elongata_contig18850.5159.1 ID=mRNA_H-elongata_contig18850.5159.1|Name=mRNA_H-elongata_contig18850.5159.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig18850:32..2151+ (Himanthalia elongata Himel1 dioecious)
GCATGCTACACGGTCCGTTCTTTTGGCATCCGCCGTAACGAGAAGATCGC
GTGCCACGTAACGGCATGCTACACGGTCCGTTCTTTTGGCATCCGCCGTA
ACGAGAAGATCGCGTGCCACGTAACGGTTCGCGGAGACAAGGCGTTAGAG
ATCCTTGAGCGCGGCCTTAAAGTAAAGGAGTACGAGCTCAAGCGCAAAAA
TTTCTCCAACACGGGAAGCTTTGGCTTTGGCATCCAAGAGCACATTGACC
TTGGGCTCAAGTACGACCCATCCACGGGTTCGCGGAGACAAGGCGTTAGA
GATCCTTGAGCGCGGCCTTAAAGTAAAGGAGTACGAGCTCAAGCGCAAAA
ATTTCTCCAACACGGGAAGCTTTGGCTTTGGCATCCAAGAGCACATTGAC
CTTGGGCTCAAGTACGACCCATCCACGGGCATCTACGGAATGGACTTCTA
CGTCGTGCTTAACCGTCCAGGCTACCGCGTGGCAAAGCGCAAGGAGAAGG
TGGCCAAGATCGGTTACCAGCACAAGGTCACCAAGACGGATGCCATCAAG
TGGTTCCAGGCATCTACGGAATGGACTTCTACGTCGTGCTTAACCGTCCA
GGCTACCGCGTGGCAAAGCGCAAGGAGAAGGTGGCCAAGATCGGTTACCA
GCACAAGGTCACCAAGACGGATGCCATCAAGTGGTTCCAGGCAAGGTTTG
AAGGCATCGTCACCGGCTAGGCAAGGTTTGAAGGCATCGTCACCGGCTAG
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