mRNA_H-elongata_contig188468.5157.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig188468.5157.1
Unique NamemRNA_H-elongata_contig188468.5157.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig188468.5157.1 vs. uniprot
Match: A0A151RAL0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RAL0_CAJCA)

HSP 1 Score: 90.1 bits (222), Expect = 1.450e-18
Identity = 46/104 (44.23%), Postives = 64/104 (61.54%), Query Frame = 1
Query:   61 LFIDISGPFHETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDMINDYFVSEGLMIGVIRMDGGGEWH-GQFLSFLRELGIKRESTPPYTPQYNGVAER 369
            ++ D+ GPF   SLGGNR+ +  IDDF++   +  L  KS+A N             G +I ++R DGGGE++ G+F SF ++ GI  E  PPYTPQ+NGVAER
Sbjct:  312 IYTDVCGPFEVPSLGGNRYFITFIDDFSKRIWLFLLGRKSEAFNCFVQFKKLVEKQSGKVIKILRSDGGGEYNNGEFASFYKKEGIIHEIVPPYTPQHNGVAER 415          
BLAST of mRNA_H-elongata_contig188468.5157.1 vs. uniprot
Match: A0A0K8U1D4_BACLA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Bactrocera latifrons TaxID=174628 RepID=A0A0K8U1D4_BACLA)

HSP 1 Score: 87.0 bits (214), Expect = 1.430e-17
Identity = 48/116 (41.38%), Postives = 65/116 (56.03%), Query Frame = 1
Query:   25 STENRADRRAGPLFIDISGPFHETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDMINDYFVSEGLMIGVIRMDGGGEW-HGQFLSFLRELGIKRESTPPYTPQYNGVAER 369
            STE R+    G +  D+ GP    SLGG R+ +  +DD TR+  V FLK K +  N  ++         G  + V+R D G E+ +  F +FL+E GI R+ T PYTPQ NGVAER
Sbjct:   99 STERRSAEILGVIHSDVCGPMRIPSLGGARYFLTFVDDKTRYVFVYFLKSKDEVFNKFKEYKKMAECQSGKKLKVLRSDNGTEFVNNSFDNFLKENGIMRQLTVPYTPQQNGVAER 214          
BLAST of mRNA_H-elongata_contig188468.5157.1 vs. uniprot
Match: A0A1J3G8A6_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3G8A6_NOCCA)

HSP 1 Score: 85.9 bits (211), Expect = 1.800e-17
Identity = 49/117 (41.88%), Postives = 67/117 (57.26%), Query Frame = 1
Query:   31 ENRADRRAGPL---FIDISGPFHETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDMINDYFVSEGLMIGVIRMDGGGEW-HGQFLSFLRELGIKRESTPPYTPQYNGVAER 369
            +N   R   PL     D+ GP   +S  G R+++L +DDF+R+  V F+K KS+  +  ++         G  I  +R D GGE+   +FLSF R+ GIKRE T PYTPQ NGVAER
Sbjct:  106 DNSTSRCNAPLERVHSDLMGPTRTSSYSGFRYMLLFVDDFSRYTWVYFVKEKSEVFSKFQEFKVTVEGELGRKIKTLRTDNGGEFMSNEFLSFCRKQGIKREFTCPYTPQQNGVAER 222          
BLAST of mRNA_H-elongata_contig188468.5157.1 vs. uniprot
Match: A0A5N6NZN2_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NZN2_9ASTR)

HSP 1 Score: 87.0 bits (214), Expect = 1.830e-17
Identity = 46/122 (37.70%), Postives = 67/122 (54.92%), Query Frame = 1
Query:    7 RYAVPKSTENRADRRAGPLFIDISGPFHETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDMINDYFVSEGLMIGVIRMDGGGEWHG-QFLSFLRELGIKRESTPPYTPQYNGVAER 369
            R   P+ T  RA +    +  D+ GP   +++GGN+F  L +DD++R+  V  LK K++A    +           L +G +R D GGE+   +FL F  + GIKR+ T PYTPQ NGV ER
Sbjct:  513 RLPFPQETTWRASKPLELIHADLCGPITPSTMGGNKFFFLLVDDYSRYMWVYLLKSKNEAFLNFKKFKATVEKESELKVGTLRTDRGGEFVSKEFLQFCEDHGIKRQLTAPYTPQQNGVVER 634          
BLAST of mRNA_H-elongata_contig188468.5157.1 vs. uniprot
Match: W8ADM5_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8ADM5_CERCA)

HSP 1 Score: 87.0 bits (214), Expect = 1.870e-17
Identity = 47/118 (39.83%), Postives = 69/118 (58.47%), Query Frame = 1
Query:   19 PKSTENRADRRAGPLFIDISGPFHETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDMINDYFVSEGLMIGVIRMDGGGEWHGQ-FLSFLRELGIKRESTPPYTPQYNGVAER 369
            P+ ++NRA +    +  DI GP ++ S+GG+R+    IDD +R+K V FLK K +  +A +             I ++R D G E+  + F +FL+E GI R+ T PYTPQ NGVAER
Sbjct:  448 PQESKNRAKKLCEIIHTDICGPINKKSIGGSRYFATFIDDMSRYKCVYFLKSKDEIFSAFKSFKAMAEKQTNCKIKILRSDNGREYLSKNFENFLKENGIVRQLTVPYTPQQNGVAER 565          
BLAST of mRNA_H-elongata_contig188468.5157.1 vs. uniprot
Match: A0A0K8U8C3_BACLA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Bactrocera latifrons TaxID=174628 RepID=A0A0K8U8C3_BACLA)

HSP 1 Score: 86.3 bits (212), Expect = 3.390e-17
Identity = 49/117 (41.88%), Postives = 65/117 (55.56%), Query Frame = 1
Query:   22 KSTENRADRRAGPLFIDISGPFHETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDMINDYFVSEGLMIGVIRMDGGGEW-HGQFLSFLRELGIKRESTPPYTPQYNGVAER 369
            + TE    +    +  D+ GP +  SLGGNRF +  IDDF+R   V F+K KS+     R+  +         I  IR D G E+ + +F +FL+  GIKRE T PYTPQ NGVAER
Sbjct:  343 QKTERSTKKVLELVHTDVCGPMNVKSLGGNRFFVTFIDDFSRKTFVYFMKAKSEVFKKFRNFKSFVECQMDCKIKAIRSDNGKEYINSEFDNFLKNCGIKRELTVPYTPQQNGVAER 459          
BLAST of mRNA_H-elongata_contig188468.5157.1 vs. uniprot
Match: A0A0K8WJW9_BACLA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Bactrocera latifrons TaxID=174628 RepID=A0A0K8WJW9_BACLA)

HSP 1 Score: 86.3 bits (212), Expect = 3.470e-17
Identity = 49/117 (41.88%), Postives = 65/117 (55.56%), Query Frame = 1
Query:   22 KSTENRADRRAGPLFIDISGPFHETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDMINDYFVSEGLMIGVIRMDGGGEW-HGQFLSFLRELGIKRESTPPYTPQYNGVAER 369
            + TE    +    +  D+ GP +  SLGGNRF +  IDDF+R   V F+K KS+     R+  +         I  IR D G E+ + +F +FL+  GIKRE T PYTPQ NGVAER
Sbjct:  343 QKTERSTKKVLELVHTDVCGPMNVKSLGGNRFFVTFIDDFSRKTFVYFMKAKSEVFKKFRNFKSFVECQMDCKIKAIRSDNGKEYINSEFDNFLKNCGIKRELTVPYTPQQNGVAER 459          
BLAST of mRNA_H-elongata_contig188468.5157.1 vs. uniprot
Match: A0A5N6PWF0_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PWF0_9ASTR)

HSP 1 Score: 85.9 bits (211), Expect = 4.630e-17
Identity = 44/122 (36.07%), Postives = 68/122 (55.74%), Query Frame = 1
Query:    7 RYAVPKSTENRADRRAGPLFIDISGPFHETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDMINDYFVSEGLMIGVIRMDGGGEWHGQ-FLSFLRELGIKRESTPPYTPQYNGVAER 369
            R + PK +  RA++    +  D+ GP    +LGGNR+ ML +DD+TR+  V  L+ K +A    +   N+  +   L +  ++ D GGE+  + F  +  E G+KR  T PY+PQ NGV ER
Sbjct:  506 RNSFPKKSLYRANKPFELVHTDLCGPISPPTLGGNRYFMLLVDDYTRYAWVYALRTKDEALGVFKKFKNEVELEHELKVKALKSDRGGEFLNRLFAEYCDETGVKRMFTAPYSPQQNGVVER 627          
BLAST of mRNA_H-elongata_contig188468.5157.1 vs. uniprot
Match: A0A177WWT4_BATDL (Uncharacterized protein n=1 Tax=Batrachochytrium dendrobatidis (strain JEL423) TaxID=403673 RepID=A0A177WWT4_BATDL)

HSP 1 Score: 85.9 bits (211), Expect = 4.640e-17
Identity = 44/122 (36.07%), Postives = 71/122 (58.20%), Query Frame = 1
Query:    7 RYAVPKSTENRADRRAGPLFIDISGPFHETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDMINDYFVSEGLMIGVIRMDGGGEWHGQ-FLSFLRELGIKRESTPPYTPQYNGVAER 369
            R+  PK + + A +    L +D+ GPFH+T+LGG ++ ++ +DD++R+  +  +  K       ++ +    +S+GL +  IR D GGE+    F  FL+  GI  + T PYTPQ NGVAER
Sbjct:  357 RHPFPKRSTHVATQVNVLLHMDLEGPFHDTALGGYKYYLIIVDDYSRYSHLYPMISKDQTFQRFKEHVAAVELSKGLPVRAIRTDNGGEFTSSAFQQFLKLKGIAVQRTTPYTPQQNGVAER 478          
BLAST of mRNA_H-elongata_contig188468.5157.1 vs. uniprot
Match: A0A177VYH4_BATDL (Uncharacterized protein (Fragment) n=5 Tax=Batrachochytrium dendrobatidis (strain JEL423) TaxID=403673 RepID=A0A177VYH4_BATDL)

HSP 1 Score: 85.9 bits (211), Expect = 4.750e-17
Identity = 44/122 (36.07%), Postives = 71/122 (58.20%), Query Frame = 1
Query:    7 RYAVPKSTENRADRRAGPLFIDISGPFHETSLGGNRFVMLCIDDFTRFKMVRFLKHKSDATNALRDMINDYFVSEGLMIGVIRMDGGGEWHGQ-FLSFLRELGIKRESTPPYTPQYNGVAER 369
            R+  PK + + A +    L +D+ GPFH+T+LGG ++ ++ +DD++R+  +  +  K       ++ +    +S+GL +  IR D GGE+    F  FL+  GI  + T PYTPQ NGVAER
Sbjct:  568 RHPFPKRSTHVATQVNVLLHMDLEGPFHDTALGGYKYYLIIVDDYSRYSHLYPMISKDQTFQRFKEHVAAVELSKGLPVRAIRTDNGGEFTSSAFQQFLKLKGIAVQRTTPYTPQQNGVAER 689          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig188468.5157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151RAL0_CAJCA1.450e-1844.23Retrovirus-related Pol polyprotein from transposon... [more]
A0A0K8U1D4_BACLA1.430e-1741.38Retrovirus-related Pol polyprotein from transposon... [more]
A0A1J3G8A6_NOCCA1.800e-1741.88Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N6NZN2_9ASTR1.830e-1737.70Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
W8ADM5_CERCA1.870e-1739.83Retrovirus-related Pol polyprotein from transposon... [more]
A0A0K8U8C3_BACLA3.390e-1741.88Retrovirus-related Pol polyprotein from transposon... [more]
A0A0K8WJW9_BACLA3.470e-1741.88Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N6PWF0_9ASTR4.630e-1736.07Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A177WWT4_BATDL4.640e-1736.07Uncharacterized protein n=1 Tax=Batrachochytrium d... [more]
A0A177VYH4_BATDL4.750e-1736.07Uncharacterized protein (Fragment) n=5 Tax=Batrach... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig188468contigH-elongata_contig188468:85..453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score85.5
Seed ortholog evalue1.9e-14
Seed eggNOG ortholog3641.EOY08987
KEGG koko:K20093
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size369
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930078.0463746-CDS-H-elongata_contig188468:84..4531622930078.0463746-CDS-H-elongata_contig188468:84..453Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188468 85..453 +
1691679272.2763107-CDS-H-elongata_contig188468:84..4531691679272.2763107-CDS-H-elongata_contig188468:84..453Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188468 85..453 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig188468.5157.1prot_H-elongata_contig188468.5157.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig188468 85..453 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig188468.5157.1

>prot_H-elongata_contig188468.5157.1 ID=prot_H-elongata_contig188468.5157.1|Name=mRNA_H-elongata_contig188468.5157.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=123bp
VQRYAVPKSTENRADRRAGPLFIDISGPFHETSLGGNRFVMLCIDDFTRF
KMVRFLKHKSDATNALRDMINDYFVSEGLMIGVIRMDGGGEWHGQFLSFL
RELGIKRESTPPYTPQYNGVAER
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mRNA from alignment at H-elongata_contig188468:85..453+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig188468.5157.1 ID=mRNA_H-elongata_contig188468.5157.1|Name=mRNA_H-elongata_contig188468.5157.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=369bp|location=Sequence derived from alignment at H-elongata_contig188468:85..453+ (Himanthalia elongata Himel1 dioecious)
GTGCAGCGATACGCCGTGCCTAAATCCACGGAGAATCGGGCTGACAGGCG CGCGGGACCGCTGTTTATTGATATCTCAGGCCCCTTTCACGAGACGTCTC TCGGAGGAAACAGATTCGTCATGCTGTGCATTGACGACTTTACCCGCTTC AAAATGGTCCGTTTCCTCAAGCACAAGAGCGACGCCACGAATGCATTAAG GGACATGATCAACGACTACTTCGTGTCCGAGGGCCTCATGATCGGTGTCA TCCGCATGGACGGTGGGGGAGAATGGCACGGTCAGTTCCTGTCTTTCCTG CGTGAGCTCGGAATCAAGCGCGAGTCCACACCCCCATATACCCCCCAATA CAATGGCGTCGCGGAGCGC
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Coding sequence (CDS) from alignment at H-elongata_contig188468:85..453+

>mRNA_H-elongata_contig188468.5157.1 ID=mRNA_H-elongata_contig188468.5157.1|Name=mRNA_H-elongata_contig188468.5157.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at H-elongata_contig188468:85..453+ (Himanthalia elongata Himel1 dioecious)
GTGCAGCGATACGCCGTGCCTAAATCCACGGAGAATCGGGCTGACAGGCG
CGCGGGACCGCTGTTTATTGATATCTCAGGCCCCTTTCACGAGACGTCTC
TCGGAGGAAACAGATTCGTCATGCTGTGCATTGACGACTTTACCCGCTTC
AAAATGGTCCGTTTCCTCAAGCACAAGAGCGACGCCACGAATGCATTAAG
GGACATGATCAACGACTACTTCGTGTCCGAGGGCCTCATGATCGGTGTCA
TCCGCATGGACGGTGGGGGAGAATGGCACGGTCAGTTCCTGTCTTTCCTG
CGTGAGCTCGGAATCAAGCGCGAGTCCACACCCCCATATACCCCCCAATA
CAATGGCGTCGCGGAGCGCGTGCAGCGATACGCCGTGCCTAAATCCACGG
AGAATCGGGCTGACAGGCGCGCGGGACCGCTGTTTATTGATATCTCAGGC
CCCTTTCACGAGACGTCTCTCGGAGGAAACAGATTCGTCATGCTGTGCAT
TGACGACTTTACCCGCTTCAAAATGGTCCGTTTCCTCAAGCACAAGAGCG
ACGCCACGAATGCATTAAGGGACATGATCAACGACTACTTCGTGTCCGAG
GGCCTCATGATCGGTGTCATCCGCATGGACGGTGGGGGAGAATGGCACGG
TCAGTTCCTGTCTTTCCTGCGTGAGCTCGGAATCAAGCGCGAGTCCACAC
CCCCATATACCCCCCAATACAATGGCGTCGCGGAGCGC
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