mRNA_H-elongata_contig18845.5156.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18845.5156.1
Unique NamemRNA_H-elongata_contig18845.5156.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig18845.5156.1 vs. uniprot
Match: A0A6A3GI70_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GI70_9STRA)

HSP 1 Score: 157 bits (398), Expect = 1.240e-42
Identity = 102/286 (35.66%), Postives = 164/286 (57.34%), Query Frame = 1
Query:    1 MKDMGNARYNMNCHITRNRKALELKIDHRLYAELMVEAFDVK--KGSKIPATSWVSTLSKAEESRNPEEKDEMRKFPCREAVGALMWMATMTGLDIASAVRAVARFCENPGSAHKKAVIKIMQHFLHTKDWGIAY-GRQGYVLCMNVYTNLDFGACLDMR*SVTGVVLVLAKGAISWY*RIQ*VTASGTSDAEYVVLSEAVKEVLVFKQVQKFMEASMRVGVVNVFEDNKGGIKLATNKPASRRTKHIDVEHNTVRDASEAQKVRIAYVRSEDQHADLLTKPLDTQ 849
            +KDMG AR+ +   I  + +   L I H+ Y E +++ F  +  K    P    V  L+KA+E +  E+K +M+  P R  VG+LM++A  T  DI+ AV  ++RF ENPG  H  A IK++++ L TKD GI Y G  G  L    Y++ D+    D R SV+G++L+L    + W    Q   A  +++AEY+ LS+ VKE +  +++ K + A  +VG   ++EDN+G + LA N     RTKHID+ ++ +R+   + +V + YV + +Q AD +TK L ++
Sbjct:   24 IKDMGRARFILGIEIDYDMERRTLGISHKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQL--EAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAE-QVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSDEVELQYVDTNNQLADFMTKCLSSK 305          
BLAST of mRNA_H-elongata_contig18845.5156.1 vs. uniprot
Match: A0A8K1CTN1_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTN1_PYTOL)

HSP 1 Score: 155 bits (393), Expect = 2.500e-40
Identity = 98/286 (34.27%), Postives = 163/286 (56.99%), Query Frame = 1
Query:    1 MKDMGNARYNMNCHITRNRKALELKIDHRLYAELMVEAFDVKKGSKIPATSWVST-LSKAEESRNPEEKDEMRKFPCREAVGALMWMATMTGLDIASAVRAVARFCENPGSAHKKAVIKIMQHFLHTKDWGIAYGRQGYVLCMNVYTNLDFGACLDMR*SVTGVVLVLAKGAISWY*RIQ*VTASGTSDAEYVVLSEAVKEVLVFKQVQKFMEASMRVGVVNVFEDNKGGIKLATNKPASRRTKHIDVEHNTVRDASEAQKVRIAYVRSEDQHADLLTKPLDTQRF 855
            +K++G  ++ +   I  +R    L I+   Y + +VE F+ +    +      S  LSKA+  R+ ++K EM K P R  +G L ++A  T  DIA AV  ++RF ENPG  H  A I+++++   T+D+GI+YG         V+ + D+G  +D R SV+G+V+++  G I +  + Q   A  +S+AEY+ LS   +EV+  + +   +  +++  +  V+EDN+G I LA N     RTKHID+ H+ VRD      ++++YV ++ Q AD+LTK L T+RF
Sbjct:  215 IKELGPVKHLLGMEIVYDRVKRYLSINQAHYVKTLVERFNQQSCRDVTNPCEQSLKLSKADGPRDDQQKAEMSKRPYRSLIGCLQYVAQCTRPDIAFAVTHLSRFMENPGPRHWTAAIRVLRYLKSTRDYGISYGGDHEENTPVVFCDADWGTSVDDRRSVSGLVIMMNGGPIVFKAKYQSTVALSSSEAEYLALSLCGQEVMWVRTMLHDLGINIKKPI-QVWEDNQGAIALAHNAGYHARTKHIDIRHHYVRDLVADSVIKLSYVETQRQLADILTKSLGTKRF 499          
BLAST of mRNA_H-elongata_contig18845.5156.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 4.770e-40
Identity = 99/279 (35.48%), Postives = 150/279 (53.76%), Query Frame = 1
Query:    4 KDMGNARYNMNCHITRNRKALELKIDHRLYAELMVEAFDVKKGSKIPATSWVSTLSKAEESRNPEEKDEMRKFPCREAVGALMWMATMTGLDIASAVRAVARFCENPGSAHKKAVIKIMQHFLHTKDWGIAYGRQGYVLCMNVYTNLDFGACLDMR*SVTGVVLVLAKGAISWY*RIQ*VTASGTSDAEYVVLSEAVKEVLVFKQVQKFMEASMRVGVVNVFEDNKGGIKLATNKPASRRTKHIDVEHNTVRDASEAQKVRIAYVRSEDQHADLLTKPL 840
            K++G  ++   C I R+ +A  L+I    Y + MVE FDVK  S+IPAT       K E+    E       +P REA+G++MW++T +  D++ AVRAVAR    P   H  A+ KI+ +   T+D GI Y R G  L + VY +  +    D R SV+G+   +    +S   + Q + +  +++AEY+   E VKE L  + V  F+        + V EDN+G I L  N  +S RTKHIDV ++ +R    +  + + +V + +QHADLLTK L
Sbjct:  960 KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGE-------WPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQR-GSGLGLAVYVDASYADTEDRR-SVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1229          
BLAST of mRNA_H-elongata_contig18845.5156.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 5.000e-40
Identity = 99/279 (35.48%), Postives = 150/279 (53.76%), Query Frame = 1
Query:    4 KDMGNARYNMNCHITRNRKALELKIDHRLYAELMVEAFDVKKGSKIPATSWVSTLSKAEESRNPEEKDEMRKFPCREAVGALMWMATMTGLDIASAVRAVARFCENPGSAHKKAVIKIMQHFLHTKDWGIAYGRQGYVLCMNVYTNLDFGACLDMR*SVTGVVLVLAKGAISWY*RIQ*VTASGTSDAEYVVLSEAVKEVLVFKQVQKFMEASMRVGVVNVFEDNKGGIKLATNKPASRRTKHIDVEHNTVRDASEAQKVRIAYVRSEDQHADLLTKPL 840
            K++G  ++   C I R+ +A  L+I    Y + MVE FDVK  S+IPAT       K E+    E       +P REA+G++MW++T +  D++ AVRAVAR    P   H  A+ KI+ +   T+D GI Y R G  L + VY +  +    D R SV+G+   +    +S   + Q + +  +++AEY+   E VKE L  + V  F+        + V EDN+G I L  N  +S RTKHIDV ++ +R    +  + + +V + +QHADLLTK L
Sbjct: 1339 KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGE-------WPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQR-GSGLGLAVYVDASYADTEDRR-SVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1608          
BLAST of mRNA_H-elongata_contig18845.5156.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 5.030e-40
Identity = 99/279 (35.48%), Postives = 150/279 (53.76%), Query Frame = 1
Query:    4 KDMGNARYNMNCHITRNRKALELKIDHRLYAELMVEAFDVKKGSKIPATSWVSTLSKAEESRNPEEKDEMRKFPCREAVGALMWMATMTGLDIASAVRAVARFCENPGSAHKKAVIKIMQHFLHTKDWGIAYGRQGYVLCMNVYTNLDFGACLDMR*SVTGVVLVLAKGAISWY*RIQ*VTASGTSDAEYVVLSEAVKEVLVFKQVQKFMEASMRVGVVNVFEDNKGGIKLATNKPASRRTKHIDVEHNTVRDASEAQKVRIAYVRSEDQHADLLTKPL 840
            K++G  ++   C I R+ +A  L+I    Y + MVE FDVK  S+IPAT       K E+    E       +P REA+G++MW++T +  D++ AVRAVAR    P   H  A+ KI+ +   T+D GI Y R G  L + VY +  +    D R SV+G+   +    +S   + Q + +  +++AEY+   E VKE L  + V  F+        + V EDN+G I L  N  +S RTKHIDV ++ +R    +  + + +V + +QHADLLTK L
Sbjct: 1359 KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGE-------WPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQR-GSGLGLAVYVDASYADTEDRR-SVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1628          
BLAST of mRNA_H-elongata_contig18845.5156.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 5.070e-40
Identity = 99/279 (35.48%), Postives = 150/279 (53.76%), Query Frame = 1
Query:    4 KDMGNARYNMNCHITRNRKALELKIDHRLYAELMVEAFDVKKGSKIPATSWVSTLSKAEESRNPEEKDEMRKFPCREAVGALMWMATMTGLDIASAVRAVARFCENPGSAHKKAVIKIMQHFLHTKDWGIAYGRQGYVLCMNVYTNLDFGACLDMR*SVTGVVLVLAKGAISWY*RIQ*VTASGTSDAEYVVLSEAVKEVLVFKQVQKFMEASMRVGVVNVFEDNKGGIKLATNKPASRRTKHIDVEHNTVRDASEAQKVRIAYVRSEDQHADLLTKPL 840
            K++G  ++   C I R+ +A  L+I    Y + MVE FDVK  S+IPAT       K E+    E       +P REA+G++MW++T +  D++ AVRAVAR    P   H  A+ KI+ +   T+D GI Y R G  L + VY +  +    D R SV+G+   +    +S   + Q + +  +++AEY+   E VKE L  + V  F+        + V EDN+G I L  N  +S RTKHIDV ++ +R    +  + + +V + +QHADLLTK L
Sbjct: 1502 KNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGE-------WPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQR-GSGLGLAVYVDASYADTEDRR-SVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1771          
BLAST of mRNA_H-elongata_contig18845.5156.1 vs. uniprot
Match: A0A6A3YGI7_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YGI7_9STRA)

HSP 1 Score: 157 bits (398), Expect = 7.870e-40
Identity = 102/286 (35.66%), Postives = 167/286 (58.39%), Query Frame = 1
Query:    1 MKDMGNARYNMNCHITRNRKALELKIDHRLYAELMVEAFDVK--KGSKIPATSWVSTLSKAEESRNPEEKDEMRKFPCREAVGALMWMATMTGLDIASAVRAVARFCENPGSAHKKAVIKIMQHFLHTKDWGIAY-GRQGYVLCMNVYTNLDFGACLDMR*SVTGVVLVLAKGAISWY*RIQ*VTASGTSDAEYVVLSEAVKEVLVFKQVQKFMEASMRVGVVNVFEDNKGGIKLATNKPASRRTKHIDVEHNTVRDASEAQKVRIAYVRSEDQHADLLTKPLDTQ 849
            +KDMG AR+ +   I  + +   L I  + Y E +++ F  +  K    P    V  L+KA+E +  E+K +M+  P R  VG+LM++A  T  DI+ AV  ++RF ENPG  H  A IK++++ L TKD GI Y G  G  L    Y++ D+    D R SV+G++L+L +  + W    Q   A  +++AEY+ LS+ VKE +  +++ K + A  +VG   ++EDN+G + LA N     RTKHID+ ++ VR+ + + +V++ YV +++Q AD +TK L ++
Sbjct:  627 IKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKLKPYRSLVGSLMYLARGTRPDISVAVAKLSRFPENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGAQL--EAYSDADWAGNRDDRRSVSGMLLMLCRAPVVWRSTFQKTVALSSTEAEYLALSDCVKECVWMRRLLKDIGAE-QVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFVREKAVSNEVKLEYVDTKNQLADFMTKGLSSK 908          
BLAST of mRNA_H-elongata_contig18845.5156.1 vs. uniprot
Match: A0A6G0MK94_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=A0A6G0MK94_9STRA)

HSP 1 Score: 152 bits (385), Expect = 1.070e-39
Identity = 98/290 (33.79%), Postives = 166/290 (57.24%), Query Frame = 1
Query:    1 MKDMGNARYNMNCHITRNRKALELKIDHRLYAELMVEAFDVKKGSKIPATSWVSTL------SKAEESRNPEEKDEMRKFPCREAVGALMWMATMTGLDIASAVRAVARFCENPGSAHKKAVIKIMQHFLHTKDWGIAY-GRQGYVLCMNVYTNLDFGACLDMR*SVTGVVLVLAKGAISWY*RIQ*VTASGTSDAEYVVLSEAVKEVLVFKQVQKFMEASMRVGVVNVFEDNKGGIKLATNKPASRRTKHIDVEHNTVRDASEAQKVRIAYVRSEDQHADLLTKPLDTQ 849
            +KD+G AR+ +   I  + +   L I  + Y E +++ F  +      A  W++ L      +KA+E +  E+K +M+  P R  VG+LM++A  T  DI+ AV  ++RF ENPG  H  A IK++++ L TKD GI Y G  G  L    Y++ ++    D R SV+G++L+L    + W    Q   A  +++AEY+ LS+ VKE +  +++ K + A  +VG + ++EDN+G + LA N     RTKHID+ ++ +R+   + +V + YV +++Q AD +TK L ++
Sbjct:  135 IKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQEN-----AKPWLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQL--EAYSDANWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAE-QVGAMVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSSEVELEYVDTKNQLADFMTKGLSSK 416          
BLAST of mRNA_H-elongata_contig18845.5156.1 vs. uniprot
Match: A0A6A3HFF3_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HFF3_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.270e-39
Identity = 91/285 (31.93%), Postives = 154/285 (54.04%), Query Frame = 1
Query:    1 MKDMGNARYNMNCHITRNRKALELKIDHRLYAELMVEAFDVKKGSKI--PATSWVSTLSKAEESRNPEEKDEMRKFPCREAVGALMWMATMTGLDIASAVRAVARFCENPGSAHKKAVIKIMQHFLHTKDWGIAYGRQGYVLCMNVYTNLDFGACLDMR*SVTGVVLVLAKGAISWY*RIQ*VTASGTSDAEYVVLSEAVKEVLVFKQVQKFMEASMRVGVVNVFEDNKGGIKLATNKPASRRTKHIDVEHNTVRDASEAQKVRIAYVRSEDQHADLLTKPLDTQ 849
            MK++G A++ +   I  +  A  LKI    Y + +VE F  +    +  P  + +  LSK +      E++ MR  P R  +G L+++ T T  DIA  V  ++RF ENPG  H  A ++++++   T+  GI Y    + + +  Y++ D+G  LD R SV+GV+++     + +  + Q   A  +++AEY+ LS  V+EVL  + +   M    R     ++EDN+G I L  N     RTKH+D+ H+ +R+  E   V++ YV +++Q AD+LTK L T+
Sbjct:    1 MKELGPAKFILGMEIDHDMTAGTLKIKQTRYIDDVVERFGQENAKPVDNPCAAGLK-LSKTQSPGTDAEQNAMRSKPYRSLIGCLLYITTCTRPDIAFVVTQLSRFLENPGQQHWNAAVRVLRYLKSTRQHGIIYHGGTHTVTLKAYSDADWGTSLDDRRSVSGVMVMTGNAPVVFKSKFQRTGALSSAEAEYMALSLCVQEVLWTRAMLTVMGTLQR-NATTIWEDNQGAIALVHNAGYHARTKHVDIRHHFIRENVERGTVKVEYVDTKNQLADILTKALGTK 283          
BLAST of mRNA_H-elongata_contig18845.5156.1 vs. uniprot
Match: A0A6A3Q8N8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q8N8_9STRA)

HSP 1 Score: 155 bits (392), Expect = 1.480e-39
Identity = 99/286 (34.62%), Postives = 163/286 (56.99%), Query Frame = 1
Query:    1 MKDMGNARYNMNCHITRNRKALELKIDHRLYAELMVEAFDVK--KGSKIPATSWVSTLSKAEESRNPEEKDEMRKFPCREAVGALMWMATMTGLDIASAVRAVARFCENPGSAHKKAVIKIMQHFLHTKDWGIAY-GRQGYVLCMNVYTNLDFGACLDMR*SVTGVVLVLAKGAISWY*RIQ*VTASGTSDAEYVVLSEAVKEVLVFKQVQKFMEASMRVGVVNVFEDNKGGIKLATNKPASRRTKHIDVEHNTVRDASEAQKVRIAYVRSEDQHADLLTKPLDTQ 849
            +KD+G AR+ +   I  N +   L I  + Y E +++ F  +  K    P    V  L+KA+E +  E+K +M+  P R  VG+LM++A  T  D++ AV  ++RF ENPG  H  + IK +++ L TKD GI Y G+ G  L    Y++ D+    D R SV+G++L+L    + W    Q   A  +++AEY+ LS+ VKE +  +++ K + A  +VG   ++EDN+G + LA N     RTKHID+ ++ +R+     +V + YV +++Q AD +TK L ++
Sbjct:  329 IKDLGRARFILGIEIDYNMERRTLGISQKAYTESIIKTFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSVVGSLMYLACGTRPDVSVAVAKLSRFLENPGEKHWDSGIKAVRYLLKTKDVGIVYDGQLGTHL--EAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAE-QVGATEIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVGNEVELEYVDTKNQLADFMTKGLSSK 610          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18845.5156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3GI70_9STRA1.240e-4235.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8K1CTN1_PYTOL2.500e-4034.27Uncharacterized protein n=2 Tax=Pythium oligandrum... [more]
A0A6H5KSG8_9PHAE4.770e-4035.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE5.000e-4035.48Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE5.030e-4035.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE5.070e-4035.48Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6A3YGI7_9STRA7.870e-4035.66Retrovirus-related Pol polyprotein from transposon... [more]
A0A6G0MK94_9STRA1.070e-3933.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3HFF3_9STRA1.270e-3931.93Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]
A0A6A3Q8N8_9STRA1.480e-3934.62Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18845contigH-elongata_contig18845:2980..3834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.7
Seed ortholog evalue1.3e-15
Seed eggNOG ortholog164328.Phyra85763
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size855
Cds size474
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930077.9531744-UTR-H-elongata_contig18845:2979..33601622930077.9531744-UTR-H-elongata_contig18845:2979..3360Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18845 2980..3360 -
1691679272.2447581-UTR-H-elongata_contig18845:2979..33601691679272.2447581-UTR-H-elongata_contig18845:2979..3360Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18845 2980..3360 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930077.9699707-CDS-H-elongata_contig18845:3360..38341622930077.9699707-CDS-H-elongata_contig18845:3360..3834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18845 3361..3834 -
1691679272.2677145-CDS-H-elongata_contig18845:3360..38341691679272.2677145-CDS-H-elongata_contig18845:3360..3834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18845 3361..3834 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18845.5156.1prot_H-elongata_contig18845.5156.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18845 3361..3834 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18845.5156.1

>prot_H-elongata_contig18845.5156.1 ID=prot_H-elongata_contig18845.5156.1|Name=mRNA_H-elongata_contig18845.5156.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=158bp
MKDMGNARYNMNCHITRNRKALELKIDHRLYAELMVEAFDVKKGSKIPAT
SWVSTLSKAEESRNPEEKDEMRKFPCREAVGALMWMATMTGLDIASAVRA
VARFCENPGSAHKKAVIKIMQHFLHTKDWGIAYGRQGYVLCMNVYTNLDF
GACLDMR*
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mRNA from alignment at H-elongata_contig18845:2980..3834-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18845.5156.1 ID=mRNA_H-elongata_contig18845.5156.1|Name=mRNA_H-elongata_contig18845.5156.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=855bp|location=Sequence derived from alignment at H-elongata_contig18845:2980..3834- (Himanthalia elongata Himel1 dioecious)
ATGAAAGACATGGGAAACGCCAGGTACAACATGAACTGTCACATCACTAG GAACCGCAAGGCGCTAGAGTTGAAGATCGATCATCGCTTGTACGCAGAGT TGATGGTGGAAGCGTTTGACGTCAAGAAAGGAAGCAAGATACCAGCTACA TCGTGGGTGTCAACACTTTCAAAGGCGGAAGAGTCGCGGAACCCGGAGGA GAAGGATGAAATGAGGAAGTTTCCATGCCGGGAGGCAGTGGGGGCGCTTA TGTGGATGGCGACGATGACAGGGCTGGATATTGCGAGCGCAGTACGCGCT GTGGCTAGGTTCTGCGAAAACCCTGGGTCGGCACATAAGAAGGCAGTGAT AAAGATCATGCAGCATTTCCTTCACACGAAGGATTGGGGGATTGCATACG GTCGACAAGGCTATGTACTCTGCATGAATGTATACACGAACTTGGATTTT GGAGCCTGTCTGGATATGAGATGATCCGTGACGGGTGTGGTATTGGTGCT GGCGAAGGGAGCGATCAGCTGGTACTGAAGGATACAATAAGTTACAGCAT CGGGTACCTCGGACGCAGAGTACGTTGTTTTATCCGAGGCGGTAAAGGAG GTTCTAGTTTTTAAACAGGTTCAGAAGTTCATGGAAGCGTCGATGAGGGT CGGTGTAGTGAATGTGTTCGAGGACAATAAGGGGGGAATCAAGTTGGCCA CCAACAAACCCGCTAGCCGTAGGACAAAACACATTGATGTGGAACACAAT ACGGTGAGGGATGCATCTGAAGCGCAAAAAGTTAGAATAGCGTATGTGAG ATCAGAAGATCAGCATGCGGACTTGCTCACCAAGCCGTTAGACACGCAGA GGTTT
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Coding sequence (CDS) from alignment at H-elongata_contig18845:2980..3834-

>mRNA_H-elongata_contig18845.5156.1 ID=mRNA_H-elongata_contig18845.5156.1|Name=mRNA_H-elongata_contig18845.5156.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=948bp|location=Sequence derived from alignment at H-elongata_contig18845:2980..3834- (Himanthalia elongata Himel1 dioecious)
ATGAAAGACATGGGAAACGCCAGGTACAACATGAACTGTCACATCACTAG
GAACCGCAAGGCGCTAGAGTTGAAGATCGATCATCGCTTGTACGCAGAGT
TGATGGTGGAAGCGTTTGACGTCAAGAAAGGAAGCAAGATACCAGCTACA
TCGTGGGTGTCAACACTTTCAAAGGCGGAAGAGTCGCGGAACCCGGAGGA
GAAGGATGAAATGAGGAAGTTTCCATGCCGGGAGGCAGTGGGGGCGCTTA
TGTGGATGGCGACGATGACAGGGCTGGATATTGCGAGCGCAGTACGCGCT
GTGGCTAGGTTCTGCGAAAACCCTGGGTCGGCACATAAGAAGGCAGTGAT
AAAGATCATGCAGCATTTCCTTCACACGAAGGATTGGGGGATTGCATACG
GTCGACAAGGCTATGTACTCTGCATGAATGTATACACGAACTTGGATTTT
GGAGCCTGTCTGGATATGAGATGAATGAAAGACATGGGAAACGCCAGGTA
CAACATGAACTGTCACATCACTAGGAACCGCAAGGCGCTAGAGTTGAAGA
TCGATCATCGCTTGTACGCAGAGTTGATGGTGGAAGCGTTTGACGTCAAG
AAAGGAAGCAAGATACCAGCTACATCGTGGGTGTCAACACTTTCAAAGGC
GGAAGAGTCGCGGAACCCGGAGGAGAAGGATGAAATGAGGAAGTTTCCAT
GCCGGGAGGCAGTGGGGGCGCTTATGTGGATGGCGACGATGACAGGGCTG
GATATTGCGAGCGCAGTACGCGCTGTGGCTAGGTTCTGCGAAAACCCTGG
GTCGGCACATAAGAAGGCAGTGATAAAGATCATGCAGCATTTCCTTCACA
CGAAGGATTGGGGGATTGCATACGGTCGACAAGGCTATGTACTCTGCATG
AATGTATACACGAACTTGGATTTTGGAGCCTGTCTGGATATGAGATGA
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