mRNA_H-elongata_contig188314.5151.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig188314.5151.1
Unique NamemRNA_H-elongata_contig188314.5151.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig188314.5151.1 vs. uniprot
Match: D8LHF5_ECTSI (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF5_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 4.450e-14
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:   16 KAHYYRPLLDYVRSIKDRDVVLTGHSLGGGLARIVGALEK 135
            +AHYYRPLL+YVR+I+ R+VVLTGHSLGGGLARIVGALEK
Sbjct:  816 QAHYYRPLLEYVRAIEGRNVVLTGHSLGGGLARIVGALEK 855
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BLAST of mRNA_H-elongata_contig188314.5151.1 vs. uniprot
Match: A0A7S3XTY2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTY2_HETAK)

HSP 1 Score: 59.7 bits (143), Expect = 3.220e-9
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:   16 KAHYYRPLLDYVRSIKDRDVVLTGHSLGGGLARIVGALE 132
            K  YY  + +YVRS+K R VVLTGHSLGGGLARI GALE
Sbjct:  164 KKEYYHQVTEYVRSLKGRQVVLTGHSLGGGLARIAGALE 202
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BLAST of mRNA_H-elongata_contig188314.5151.1 vs. uniprot
Match: A0A8K1FCC7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FCC7_PYTOL)

HSP 1 Score: 58.2 bits (139), Expect = 1.190e-8
Identity = 25/35 (71.43%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:   25 YYRPLLDYVRSIKDRDVVLTGHSLGGGLARIVGAL 129
            YY  LL+YV SI+DRDVVLTGHS+GGG+AR+VG++
Sbjct:  718 YYHELLEYVASIQDRDVVLTGHSMGGGIARLVGSI 752
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BLAST of mRNA_H-elongata_contig188314.5151.1 vs. uniprot
Match: A0A662WTE9_9STRA (Lipase_3 domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WTE9_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.630e-8
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:   25 YYRPLLDYVRSIKDRDVVLTGHSLGGGLARIVGAL 129
            YY  LLDYV S+KDR VVLTGHS+GGG+AR+VG++
Sbjct:  244 YYHELLDYVTSLKDRKVVLTGHSMGGGIARLVGSI 278
[Close]
BLAST of mRNA_H-elongata_contig188314.5151.1 vs. uniprot
Match: A0A662YFA1_9STRA (Lipase_3 domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YFA1_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.630e-8
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:   25 YYRPLLDYVRSIKDRDVVLTGHSLGGGLARIVGAL 129
            YY  LLDYV S+KDR VVLTGHS+GGG+AR+VG++
Sbjct:  391 YYHELLDYVTSLKDRKVVLTGHSMGGGIARLVGSI 425
[Close]
BLAST of mRNA_H-elongata_contig188314.5151.1 vs. uniprot
Match: A0A2D4CB13_PYTIN (Transmembrane protein, putative (Fragment) n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CB13_PYTIN)

HSP 1 Score: 57.8 bits (138), Expect = 1.630e-8
Identity = 24/35 (68.57%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:   25 YYRPLLDYVRSIKDRDVVLTGHSLGGGLARIVGAL 129
            YY  LL+YV SI+DRDVVLTGHS+GGG+A++VG++
Sbjct:  670 YYHELLEYVESIRDRDVVLTGHSMGGGIAKLVGSI 704
[Close]
BLAST of mRNA_H-elongata_contig188314.5151.1 vs. uniprot
Match: K3WLR8_GLOUD (Lipase_3 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLR8_GLOUD)

HSP 1 Score: 57.8 bits (138), Expect = 1.630e-8
Identity = 24/37 (64.86%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:   25 YYRPLLDYVRSIKDRDVVLTGHSLGGGLARIVGALEK 135
            YY  LL+YV SI+DRDV+LTGHS+GGG+AR+VG++ +
Sbjct:  647 YYHELLEYVNSIQDRDVLLTGHSMGGGIARLVGSIVE 683
[Close]
BLAST of mRNA_H-elongata_contig188314.5151.1 vs. uniprot
Match: A0A5D6XN61_9STRA (Lipase_3 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XN61_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.630e-8
Identity = 25/40 (62.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   10 RIKAHYYRPLLDYVRSIKDRDVVLTGHSLGGGLARIVGAL 129
            R ++ YY  LLDYV SI+DR+V+LTGHS+GGG+AR+VG++
Sbjct:  711 RHESWYYHELLDYVASIRDREVLLTGHSMGGGIARLVGSI 750
[Close]
BLAST of mRNA_H-elongata_contig188314.5151.1 vs. uniprot
Match: A0A067CKS2_SAPPC (Lipase_3 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CKS2_SAPPC)

HSP 1 Score: 57.0 bits (136), Expect = 3.050e-8
Identity = 24/35 (68.57%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:   25 YYRPLLDYVRSIKDRDVVLTGHSLGGGLARIVGAL 129
            YY  L+ YV+SI DRDV+LTGHSLGGG+AR+VG++
Sbjct:  656 YYHELMHYVQSITDRDVILTGHSLGGGIARVVGSI 690
[Close]
BLAST of mRNA_H-elongata_contig188314.5151.1 vs. uniprot
Match: A0A485KXN8_9STRA (Aste57867_12985 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KXN8_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 5.700e-8
Identity = 24/35 (68.57%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:   25 YYRPLLDYVRSIKDRDVVLTGHSLGGGLARIVGAL 129
            YY  LL YV+SI+DR+V+LTGHSLGG +AR+VG+L
Sbjct:  650 YYNELLQYVKSIRDRNVILTGHSLGGAIARVVGSL 684
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig188314.5151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHF5_ECTSI4.450e-1485.00Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S3XTY2_HETAK3.220e-971.79Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8K1FCC7_PYTOL1.190e-871.43Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662WTE9_9STRA1.630e-871.43Lipase_3 domain-containing protein n=1 Tax=Nothoph... [more]
A0A662YFA1_9STRA1.630e-871.43Lipase_3 domain-containing protein (Fragment) n=1 ... [more]
A0A2D4CB13_PYTIN1.630e-868.57Transmembrane protein, putative (Fragment) n=2 Tax... [more]
K3WLR8_GLOUD1.630e-864.86Lipase_3 domain-containing protein n=1 Tax=Globisp... [more]
A0A5D6XN61_9STRA1.630e-862.50Lipase_3 domain-containing protein n=1 Tax=Pythium... [more]
A0A067CKS2_SAPPC3.050e-868.57Lipase_3 domain-containing protein n=2 Tax=Saprole... [more]
A0A485KXN8_9STRA5.700e-868.57Aste57867_12985 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig188314contigH-elongata_contig188314:920..1057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue4.3e-12
Seed eggNOG ortholog2880.D8LHF5
KEGG rclassRC00020,RC00037,RC00041,RC00094
KEGG koko:K17900
KEGG ReactionR02250,R02687
KEGG Pathwayko00561,ko01100,ko04138,map00561,map01100,map04138
KEGG ModuleM00098
EggNOG free text desc.Lipase (class 3)
EggNOG OGs2DUDU@1,2QVZS@2759
EC3.1.1.3
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930076.9156263-CDS-H-elongata_contig188314:919..10571622930076.9156263-CDS-H-elongata_contig188314:919..1057Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188314 920..1057 -
1691679271.7813668-CDS-H-elongata_contig188314:919..10571691679271.7813668-CDS-H-elongata_contig188314:919..1057Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188314 920..1057 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig188314.5151.1prot_H-elongata_contig188314.5151.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig188314 920..1057 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig188314.5151.1

>prot_H-elongata_contig188314.5151.1 ID=prot_H-elongata_contig188314.5151.1|Name=mRNA_H-elongata_contig188314.5151.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
MHARIKAHYYRPLLDYVRSIKDRDVVLTGHSLGGGLARIVGALEK*
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mRNA from alignment at H-elongata_contig188314:920..1057-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig188314.5151.1 ID=mRNA_H-elongata_contig188314.5151.1|Name=mRNA_H-elongata_contig188314.5151.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig188314:920..1057- (Himanthalia elongata Himel1 dioecious)
ATGCACGCACGAATAAAGGCGCACTACTACCGACCGCTGTTGGACTACGT
GAGATCCATCAAAGACAGAGACGTCGTCCTGACTGGCCACAGCCTCGGTG
GCGGCCTCGCTCGAATCGTGGGAGCACTCGAAAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig188314:920..1057-

>mRNA_H-elongata_contig188314.5151.1 ID=mRNA_H-elongata_contig188314.5151.1|Name=mRNA_H-elongata_contig188314.5151.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig188314:920..1057- (Himanthalia elongata Himel1 dioecious)
ATGCACGCACGAATAAAGGCGCACTACTACCGACCGCTGTTGGACTACGT
GAGATCCATCAAAGACAGAGACGTCGTCCTGACTGGCCACAGCCTCGGTG
GCGGCCTCGCTCGAATCGTGGGAGCACTCGAAAAGTGAATGCACGCACGA
ATAAAGGCGCACTACTACCGACCGCTGTTGGACTACGTGAGATCCATCAA
AGACAGAGACGTCGTCCTGACTGGCCACAGCCTCGGTGGCGGCCTCGCTC
GAATCGTGGGAGCACTCGAAAAGTGA
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