mRNA_H-elongata_contig188018.5142.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig188018.5142.1
Unique NamemRNA_H-elongata_contig188018.5142.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig188018.5142.1 vs. uniprot
Match: A0A6H5L7H3_9PHAE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7H3_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 1.170e-28
Identity = 59/67 (88.06%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:    7 ITKKVGSFVPCESAEMSVRDAVFARVGAGDSQQRGISTFMAEMLEASAIISAATKDSLIIIDELGRG 207
            +  +VGSFVPCE+AEMSVRDAVFARVGAGD+QQRG+STFMAEMLEASAIISAA+KDSLIIIDELGRG
Sbjct:  591 VMAQVGSFVPCETAEMSVRDAVFARVGAGDAQQRGVSTFMAEMLEASAIISAASKDSLIIIDELGRG 657
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BLAST of mRNA_H-elongata_contig188018.5142.1 vs. uniprot
Match: A0A7S2V0D9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0D9_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.450e-25
Identity = 52/68 (76.47%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    4 IITKKVGSFVPCESAEMSVRDAVFARVGAGDSQQRGISTFMAEMLEASAIISAATKDSLIIIDELGRG 207
            +I  +VGSFVPC SAE+SV D V ARVGAGD QQRG+STFMAEMLEASAI+  AT DSL+IIDELGRG
Sbjct:   94 VIMAQVGSFVPCSSAELSVMDCVLARVGAGDRQQRGLSTFMAEMLEASAILQTATSDSLVIIDELGRG 161
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BLAST of mRNA_H-elongata_contig188018.5142.1 vs. uniprot
Match: A0A7S0SP60_9CHLO (Hypothetical protein (Fragment) n=2 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SP60_9CHLO)

HSP 1 Score: 99.0 bits (245), Expect = 6.730e-24
Identity = 48/68 (70.59%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:    4 IITKKVGSFVPCESAEMSVRDAVFARVGAGDSQQRGISTFMAEMLEASAIISAATKDSLIIIDELGRG 207
            ++  +VGSFVPC+ A++++RDA+FARVGAGD Q RGISTFMAEMLE +AI+ AAT  SLIIIDELGRG
Sbjct:   70 VLLAQVGSFVPCDRAKITIRDAIFARVGAGDCQLRGISTFMAEMLETAAILKAATPSSLIIIDELGRG 137
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BLAST of mRNA_H-elongata_contig188018.5142.1 vs. uniprot
Match: A0A7S0RPG5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RPG5_9CHLO)

HSP 1 Score: 95.9 bits (237), Expect = 7.260e-24
Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    4 IITKKVGSFVPCESAEMSVRDAVFARVGAGDSQQRGISTFMAEMLEASAIISAATKDSLIIIDELGRG 207
            ++  +VG FVPC+SA +SVRDA+FARVGAGD Q RG+STFMAEMLE ++I+  AT  SL+IIDELGRG
Sbjct:   11 VLMAQVGCFVPCDSASISVRDAIFARVGAGDCQLRGVSTFMAEMLETASILKGATAASLVIIDELGRG 78
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BLAST of mRNA_H-elongata_contig188018.5142.1 vs. uniprot
Match: A0A1Y1ILK0_KLENI (Putative MutS homolog 2 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1ILK0_KLENI)

HSP 1 Score: 101 bits (252), Expect = 1.600e-23
Identity = 49/69 (71.01%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:    1 SIITKKVGSFVPCESAEMSVRDAVFARVGAGDSQQRGISTFMAEMLEASAIISAATKDSLIIIDELGRG 207
            +++  +VG FVPC+SA++SVRD +FARVGAGD Q RG+STFMAEMLE SAI+ AAT++SLIIIDELGRG
Sbjct:  695 NVLMAQVGCFVPCDSADISVRDCIFARVGAGDCQLRGVSTFMAEMLETSAILKAATQNSLIIIDELGRG 763
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BLAST of mRNA_H-elongata_contig188018.5142.1 vs. uniprot
Match: E1ZJU0_CHLVA (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZJU0_CHLVA)

HSP 1 Score: 99.0 bits (245), Expect = 3.900e-23
Identity = 47/69 (68.12%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 SIITKKVGSFVPCESAEMSVRDAVFARVGAGDSQQRGISTFMAEMLEASAIISAATKDSLIIIDELGRG 207
            +++  ++GSFVP +SA +SVRDA+FARVGAGD QQRG+STFMAEMLE +AI+  AT  SL+IIDELGRG
Sbjct:  137 AVLMAQIGSFVPADSARISVRDAIFARVGAGDCQQRGLSTFMAEMLETAAILKGATSSSLVIIDELGRG 205
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BLAST of mRNA_H-elongata_contig188018.5142.1 vs. uniprot
Match: A0A7J8E3D0_MOLMO (DNA mismatch repair protein Msh2 n=1 Tax=Molossus molossus TaxID=27622 RepID=A0A7J8E3D0_MOLMO)

HSP 1 Score: 97.8 bits (242), Expect = 4.050e-23
Identity = 46/68 (67.65%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:    4 IITKKVGSFVPCESAEMSVRDAVFARVGAGDSQQRGISTFMAEMLEASAIISAATKDSLIIIDELGRG 207
            ++  ++G FVPCESAE+S+ D + ARVGAGDSQ +G+STFMAEMLE ++I+ +ATKDSLIIIDELGRG
Sbjct:   42 VLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRG 109
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BLAST of mRNA_H-elongata_contig188018.5142.1 vs. uniprot
Match: A0A2R5LBE2_9ACAR (Putative mismatch repair msh3 (Fragment) n=1 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5LBE2_9ACAR)

HSP 1 Score: 95.5 bits (236), Expect = 4.190e-23
Identity = 43/69 (62.32%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 SIITKKVGSFVPCESAEMSVRDAVFARVGAGDSQQRGISTFMAEMLEASAIISAATKDSLIIIDELGRG 207
            +++  ++GSFVPC++AE+SV DAV  R+GAGD Q +G+STFMAEMLE++AI+  AT+DSL++IDELGRG
Sbjct:   14 AVLMAQIGSFVPCDAAEISVVDAVLTRIGAGDQQLKGVSTFMAEMLESAAILRTATEDSLVVIDELGRG 82
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BLAST of mRNA_H-elongata_contig188018.5142.1 vs. uniprot
Match: A0A7S3CEN8_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CEN8_9CHLO)

HSP 1 Score: 97.1 bits (240), Expect = 5.450e-23
Identity = 45/69 (65.22%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:    1 SIITKKVGSFVPCESAEMSVRDAVFARVGAGDSQQRGISTFMAEMLEASAIISAATKDSLIIIDELGRG 207
            +++  + G FVPC+ A +SVRDAV+ARVGAGD QQRG+STFMAEMLE ++I+  ATK SL++IDELGRG
Sbjct:   87 AVLLAQCGCFVPCDEATISVRDAVYARVGAGDCQQRGVSTFMAEMLETASILKGATKSSLVVIDELGRG 155
[Close]
BLAST of mRNA_H-elongata_contig188018.5142.1 vs. uniprot
Match: T1IP55_STRMM (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1IP55_STRMM)

HSP 1 Score: 100 bits (248), Expect = 5.540e-23
Identity = 46/69 (66.67%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 SIITKKVGSFVPCESAEMSVRDAVFARVGAGDSQQRGISTFMAEMLEASAIISAATKDSLIIIDELGRG 207
            +++  ++GSF+PCESAE+S+ D++ ARVGAGDSQ +G+STFM EMLE +AI+ AAT DSLIIIDELGRG
Sbjct:  679 NVVLAQIGSFIPCESAEISIVDSILARVGAGDSQMKGVSTFMVEMLETAAILRAATSDSLIIIDELGRG 747
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig188018.5142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7H3_9PHAE1.170e-2888.06DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A7S2V0D9_9STRA1.450e-2576.47Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S0SP60_9CHLO6.730e-2470.59Hypothetical protein (Fragment) n=2 Tax=Mantoniell... [more]
A0A7S0RPG5_9CHLO7.260e-2467.65Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A1Y1ILK0_KLENI1.600e-2371.01Putative MutS homolog 2 n=1 Tax=Klebsormidium nite... [more]
E1ZJU0_CHLVA3.900e-2368.12DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A7J8E3D0_MOLMO4.050e-2367.65DNA mismatch repair protein Msh2 n=1 Tax=Molossus ... [more]
A0A2R5LBE2_9ACAR4.190e-2362.32Putative mismatch repair msh3 (Fragment) n=1 Tax=O... [more]
A0A7S3CEN8_9CHLO5.450e-2365.22Hypothetical protein n=1 Tax=Chloropicon roscoffen... [more]
T1IP55_STRMM5.540e-2366.67DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig188018contigH-elongata_contig188018:401..607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.2
Seed ortholog evalue1.5e-24
Seed eggNOG ortholog2880.D8LDL8
Preferred nameMSH2
KEGG koko:K08735
KEGG Pathwayko01524,ko03430,ko05200,ko05210,map01524,map03430,map05200,map05210
KEGG ModuleM00295
GOsGO:0000003,GO:0000018,GO:0000166,GO:0000217,GO:0000400,GO:0000403,GO:0000404,GO:0000406,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006290,GO:0006298,GO:0006301,GO:0006310,GO:0006311,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007154,GO:0007165,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008630,GO:0009892,GO:0009987,GO:0010520,GO:0010564,GO:0010605,GO:0010639,GO:0010948,GO:0012501,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0023052,GO:0030554,GO:0030983,GO:0031323,GO:0031324,GO:0032135,GO:0032137,GO:0032138,GO:0032300,GO:0032301,GO:0032302,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033043,GO:0033554,GO:0034641,GO:0035556,GO:0035639,GO:0035822,GO:0036094,GO:0040020,GO:0042623,GO:0042771,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043570,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045128,GO:0045786,GO:0045835,GO:0045910,GO:0045934,GO:0046483,GO:0046983,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0060255,GO:0060631,GO:0061982,GO:0065007,GO:0071704,GO:0071840,GO:0071944,GO:0072331,GO:0072332,GO:0080090,GO:0090304,GO:0097159,GO:0097190,GO:0097193,GO:0097367,GO:0110029,GO:1901265,GO:1901360,GO:1901363,GO:1903046,GO:1990391,GO:2000241,GO:2000242
EggNOG free text desc.negative regulation of reciprocal meiotic recombination
EggNOG OGsCOG0249@1,KOG0219@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930075.9138706-CDS-H-elongata_contig188018:400..6071622930075.9138706-CDS-H-elongata_contig188018:400..607Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188018 401..607 +
1691679271.4251144-CDS-H-elongata_contig188018:400..6071691679271.4251144-CDS-H-elongata_contig188018:400..607Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig188018 401..607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig188018.5142.1prot_H-elongata_contig188018.5142.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig188018 401..607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig188018.5142.1

>prot_H-elongata_contig188018.5142.1 ID=prot_H-elongata_contig188018.5142.1|Name=mRNA_H-elongata_contig188018.5142.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
SIITKKVGSFVPCESAEMSVRDAVFARVGAGDSQQRGISTFMAEMLEASA
IISAATKDSLIIIDELGRG
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mRNA from alignment at H-elongata_contig188018:401..607+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig188018.5142.1 ID=mRNA_H-elongata_contig188018.5142.1|Name=mRNA_H-elongata_contig188018.5142.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig188018:401..607+ (Himanthalia elongata Himel1 dioecious)
TCGATTATCACCAAGAAGGTGGGGAGCTTTGTGCCGTGCGAGTCTGCGGA
GATGAGCGTCCGCGATGCGGTCTTCGCCAGGGTCGGGGCCGGGGACTCAC
AGCAGCGGGGCATCTCCACGTTCATGGCCGAGATGCTCGAGGCCTCGGCG
ATTATCTCCGCCGCAACCAAGGACTCGCTGATCATCATCGACGAGCTCGG
CCGAGGT
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Coding sequence (CDS) from alignment at H-elongata_contig188018:401..607+

>mRNA_H-elongata_contig188018.5142.1 ID=mRNA_H-elongata_contig188018.5142.1|Name=mRNA_H-elongata_contig188018.5142.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig188018:401..607+ (Himanthalia elongata Himel1 dioecious)
TCGATTATCACCAAGAAGGTGGGGAGCTTTGTGCCGTGCGAGTCTGCGGA
GATGAGCGTCCGCGATGCGGTCTTCGCCAGGGTCGGGGCCGGGGACTCAC
AGCAGCGGGGCATCTCCACGTTCATGGCCGAGATGCTCGAGGCCTCGGCG
ATTATCTCCGCCGCAACCAAGGACTCGCTGATCATCATCGACGAGCTCGG
CCGAGGTTCGATTATCACCAAGAAGGTGGGGAGCTTTGTGCCGTGCGAGT
CTGCGGAGATGAGCGTCCGCGATGCGGTCTTCGCCAGGGTCGGGGCCGGG
GACTCACAGCAGCGGGGCATCTCCACGTTCATGGCCGAGATGCTCGAGGC
CTCGGCGATTATCTCCGCCGCAACCAAGGACTCGCTGATCATCATCGACG
AGCTCGGCCGAGGT
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