mRNA_H-elongata_contig1880.5139.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1880.5139.1
Unique NamemRNA_H-elongata_contig1880.5139.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig1880.5139.1 vs. uniprot
Match: A0A7S2SU98_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SU98_9STRA)

HSP 1 Score: 104 bits (259), Expect = 5.270e-24
Identity = 53/96 (55.21%), Postives = 66/96 (68.75%), Query Frame = 1 
Query:    7 PGEHPLEGVPNMENLAAPEALS--AKVDLSEVQGLNNLFGEYITRCLYSKTWSLREAAIIKIKLMLPSLEEDPGINSALTEMCQVLRVGFEDKIAQ 288
            PG HPLEGVP  E L +PE LS  +  + ++V GL  LFG+Y  RCL SK W+LREAAIIK KL++P L  D G+ + L   CQVL++G  DKIAQ
Sbjct:  269 PGPHPLEGVPGFEELPSPEPLSPTSAGEATDVNGLLQLFGDYRVRCLVSKQWNLREAAIIKAKLLMPELIRDGGLANILQPFCQVLKLGVADKIAQ 364
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BLAST of mRNA_H-elongata_contig1880.5139.1 vs. uniprot
Match: A0A7S2SU62_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SU62_9STRA)

HSP 1 Score: 104 bits (259), Expect = 6.830e-24
Identity = 53/96 (55.21%), Postives = 66/96 (68.75%), Query Frame = 1 
Query:    7 PGEHPLEGVPNMENLAAPEALS--AKVDLSEVQGLNNLFGEYITRCLYSKTWSLREAAIIKIKLMLPSLEEDPGINSALTEMCQVLRVGFEDKIAQ 288
            PG HPLEGVP  E L +PE LS  +  + ++V GL  LFG+Y  RCL SK W+LREAAIIK KL++P L  D G+ + L   CQVL++G  DKIAQ
Sbjct:  269 PGPHPLEGVPGFEELPSPEPLSPTSAGEATDVNGLLQLFGDYRVRCLVSKQWNLREAAIIKAKLLMPELIRDGGLANILQPFCQVLKLGVADKIAQ 364
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BLAST of mRNA_H-elongata_contig1880.5139.1 vs. uniprot
Match: D7FPV5_ECTSI (TOG domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPV5_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.760e-23
Identity = 51/73 (69.86%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:    1 FSPGEHPLEGVPNM--ENLAAPEALSAKVDLSEVQGLNNLFGEYITRCLYSKTWSLREAAIIKIKLMLPSLEE 213
            + PG HPLEGVP++  E+LA PE LSAKVDLSEVQGLNNL G+Y+TRCLYSKTWSLREAA++K+ L    L E
Sbjct:  399 YPPGAHPLEGVPDLDLEDLAEPEPLSAKVDLSEVQGLNNLLGDYLTRCLYSKTWSLREAAVLKVFLTTLDLLE 471
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BLAST of mRNA_H-elongata_contig1880.5139.1 vs. uniprot
Match: A0A835ZFJ3_9STRA (TOG domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFJ3_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 9.430e-19
Identity = 50/96 (52.08%), Postives = 57/96 (59.38%), Query Frame = 1 
Query:    1 FSPGEHPLEGVPNMENLAAPEALSAKVDLSEVQGLNNLFGEYITRCLYSKTWSLREAAIIKIKLMLPSLEEDPGINSALTEMCQVLRVGFEDKIAQ 288
            F+ GEHPL GVPN+ +L  PE L  KVD SEVQGL  + GEY+ RCLYS+ W+LREAA IK                       VLRVG EDKIAQ
Sbjct:  421 FAGGEHPLRGVPNLGDLPVPEPLLLKVDSSEVQGLIAVLGEYVARCLYSRAWTLREAAAIK-----------------------VLRVGCEDKIAQ 493
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BLAST of mRNA_H-elongata_contig1880.5139.1 vs. uniprot
Match: A0A7S2GCC0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GCC0_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 9.480e-18
Identity = 48/89 (53.93%), Postives = 56/89 (62.92%), Query Frame = 1 
Query:   43 ENLAAPEALSAKVDLSEVQG-------LNNLFGEYITRCLYSKTWSLREAAIIKIKLMLPSLEEDPGINSALTEMCQVLRVGFEDKIAQ 288
            E+L  PE L+A    ++  G       L NL GEY+ RC+ SK WSLREAAIIK+KLMLP L  DPG  S L  +  VLR G EDKIAQ
Sbjct:    2 EDLPVPEPLAASGGGADNAGGPANDTELLNLVGEYLVRCIMSKQWSLREAAIIKMKLMLPDLCTDPGAGSILQPLANVLRGGIEDKIAQ 90
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BLAST of mRNA_H-elongata_contig1880.5139.1 vs. uniprot
Match: A0A0G4EPI2_VITBC (TOG domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EPI2_VITBC)

HSP 1 Score: 86.7 bits (213), Expect = 1.140e-17
Identity = 48/97 (49.48%), Postives = 59/97 (60.82%), Query Frame = 1 
Query:    1 FSPGEHPLEGVPNMENLAAPEALSAKVDLSEVQGLNNLFGEYITRCLYSKTWSLREAAIIKIKLMLPS-LEEDPGINSALTEMCQVLRVGFEDKIAQ 288
            F P +HPL GVPN+E L APE +S      E   L +LFGEY+ RCLYSKTW LREAA++K+ L   + L  D      L  +C VL+    DKIAQ
Sbjct:  439 FPPDKHPLRGVPNVEELPAPEGISPSFS-KEAGPLIDLFGEYLIRCLYSKTWHLREAAVLKLDLDFNAGLFGDFNTRQFLEGLCVVLKRAISDKIAQ 534
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BLAST of mRNA_H-elongata_contig1880.5139.1 vs. uniprot
Match: A0A1Q9DQR6_SYMMI (Centrosomal protein of 104 kDa n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9DQR6_SYMMI)

HSP 1 Score: 74.7 bits (182), Expect = 1.750e-13
Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:    1 FSPGEHPLEGVPNMENLAAPEALSAKVDLSEVQGLNNLFGEYITRCLYSKTWSLREAAIIKIKLMLPSLEEDP 219
            F   +HPL GVPN+E+L+ PE L++     E + L  LFGEY+T C+YSK WSLR+AA+ K+ L L + E  P
Sbjct:  464 FDAADHPLSGVPNVEDLSQPEPLNSNFQ-KEAEPLIQLFGEYLTNCVYSKAWSLRDAALQKLTLDLQNGEHQP 535
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BLAST of mRNA_H-elongata_contig1880.5139.1 vs. uniprot
Match: A0A812JV20_SYMPI (CEP104 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812JV20_SYMPI)

HSP 1 Score: 73.6 bits (179), Expect = 4.210e-13
Identity = 43/98 (43.88%), Postives = 56/98 (57.14%), Query Frame = 1 
Query:    1 FSPGEHPLEGVPNMENLAAPEALSAKVDLSEVQGLNNLFGEYITRCLYSKTWSLREAAIIKIKLML--PSLEEDPGINSALTEMCQVLRVGFEDKIAQ 288
            F   +HPL GVPN+E+L+ PE L++   L E + L  LFGEY+T C+YSK WSLR+AA+ K+ L L     E      S L     VL+    DK  Q
Sbjct:   55 FDAADHPLSGVPNVEDLSQPEPLNSSF-LKEAEPLIELFGEYLTNCVYSKAWSLRDAALQKLTLDLNGEQSENQSKDQSRLAGYVVVLKRMVPDKNVQ 151
[Close]
BLAST of mRNA_H-elongata_contig1880.5139.1 vs. uniprot
Match: A0A812P6C3_9DINO (CEP104 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812P6C3_9DINO)

HSP 1 Score: 73.6 bits (179), Expect = 4.580e-13
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:    1 FSPGEHPLEGVPNMENLAAPEALSAKVDLSEVQGLNNLFGEYITRCLYSKTWSLREAAIIKIKLML 198
            F   +HPL GVPN+E+L+ PE L++     E + L  LFGEY+T C+YSKTWSLR+AA+ K+ L L
Sbjct:  411 FDAADHPLSGVPNVEDLSQPEPLNSSFQ-KEAEPLIELFGEYLTNCVYSKTWSLRDAALQKLTLDL 475
[Close]
BLAST of mRNA_H-elongata_contig1880.5139.1 vs. uniprot
Match: A0A7R9Y8Y5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y8Y5_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 8.060e-13
Identity = 39/96 (40.62%), Postives = 55/96 (57.29%), Query Frame = 1 
Query:   10 GEHPLEGVPNMENLAAPEALSAKVDLSEVQGLNNLFGEYITRCLYSKTWSLREAAIIKIKLMLPSLE-EDPGINSALTEMCQVLRVGFEDKIAQAS 294
            G HPLEGV N + L  PE L+A  + S       ++GEY+TRCL S TW LR+ A++K  L++P+   ED  +   L     ++  G  DKIAQ +
Sbjct:   87 GPHPLEGVENYQELPEPEPLTAPEEFSSWV---RVYGEYVTRCLRSATWQLRDVALLKTSLVVPTYAAEDGSLGELLPVSLGIVLNGLRDKIAQVA 179
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1880.5139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2SU98_9STRA5.270e-2455.21Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2SU62_9STRA6.830e-2455.21Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D7FPV5_ECTSI1.760e-2369.86TOG domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835ZFJ3_9STRA9.430e-1952.08TOG domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2GCC0_9STRA9.480e-1853.93Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A0G4EPI2_VITBC1.140e-1749.48TOG domain-containing protein n=2 Tax=Vitrella bra... [more]
A0A1Q9DQR6_SYMMI1.750e-1349.32Centrosomal protein of 104 kDa n=1 Tax=Symbiodiniu... [more]
A0A812JV20_SYMPI4.210e-1343.88CEP104 protein n=1 Tax=Symbiodinium pilosum TaxID=... [more]
A0A812P6C3_9DINO4.580e-1353.03CEP104 protein n=1 Tax=Symbiodinium natans TaxID=8... [more]
A0A7R9Y8Y5_9STRA8.060e-1340.63Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1880contigH-elongata_contig1880:303..1916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue1.2e-19
Seed eggNOG ortholog2880.D7FPV5
KEGG koko:K16458
EggNOG free text desc.thienylcyclohexylpiperidine binding
EggNOG OGsKOG4825@1,KOG4825@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size307
Cds size306
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1880.5139.1prot_H-elongata_contig1880.5139.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1880 303..1916 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930075.5246372-CDS-H-elongata_contig1880:302..3951622930075.5246372-CDS-H-elongata_contig1880:302..395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1880 303..395 +
1691679271.2433562-CDS-H-elongata_contig1880:302..3951691679271.2433562-CDS-H-elongata_contig1880:302..395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1880 303..395 +
1622930075.5436852-CDS-H-elongata_contig1880:974..10641622930075.5436852-CDS-H-elongata_contig1880:974..1064Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1880 975..1064 +
1691679271.25299-CDS-H-elongata_contig1880:974..10641691679271.25299-CDS-H-elongata_contig1880:974..1064Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1880 975..1064 +
1622930075.5549216-CDS-H-elongata_contig1880:1793..19161622930075.5549216-CDS-H-elongata_contig1880:1793..1916Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1880 1794..1916 +
1691679271.2678397-CDS-H-elongata_contig1880:1793..19161691679271.2678397-CDS-H-elongata_contig1880:1793..1916Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1880 1794..1916 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1880.5139.1

>prot_H-elongata_contig1880.5139.1 ID=prot_H-elongata_contig1880.5139.1|Name=mRNA_H-elongata_contig1880.5139.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
FSPGEHPLEGVPNMENLAAPEALSAKVDLSEVQGLNNLFGEYITRCLYSK
TWSLREAAIIKIKLMLPSLEEDPGINSALTEMCQVLRVGFEDKIAQASRQ
G*
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mRNA from alignment at H-elongata_contig1880:303..1916+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1880.5139.1 ID=mRNA_H-elongata_contig1880.5139.1|Name=mRNA_H-elongata_contig1880.5139.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1614bp|location=Sequence derived from alignment at H-elongata_contig1880:303..1916+ (Himanthalia elongata Himel1 dioecious)
TTTTCTCCTGGGGAGCACCCGCTTGAAGGAGTTCCGAACATGGAGAATCT
GGCAGCACCAGAGGCTCTCAGCGCCAAGGTGGACCTATCCGAGGTAAGGG
ACGGGGCAAGGGTGTGCTCTCGTTGCGATGCGATTCCATGCCATGTGATT
TGCCATGTCCTCTGTAGATTTGATTATTTGAGGATGTGGTGATTGCCTTG
GACCACCGCGAGTGAGACCTCTTTCCCTACCCCCGGAGCTGACTTGTCGC
CATCCAGACAGCGCTATCCATGTTGTCGCAATCGCCATCCTTACGGTAGT
CAGTCCTGGCAGCCTGTGCGTCCTGTTTGGATTAATCCGGAATTCCCATC
CAAGCGGGTGATTGATATCTCCATTGACTTGGGGTAGAGGCATTCGTGTC
GTGTCGTGACTAGGAGGCAAGGATTTCCAGTTGTTATCCCCCCTCTTTCT
GCCAGCCATGTGTCCCTTTGTGTGCCTTGTAGAAGTTCGCTCGCCCGCTC
TGTGGCAAGGGAAGCGAAGGGAAGCGAAGGGAAGCGACGAATGAAACCCT
CCCTCAGGCGTTATAGAGAAGGGTGCAGGGGTGTAGCGAGACTTTCCTCC
CGTGGTCGAAGTCCGTCCGCCGCACACCCTCTATTTATCCTTTCCTTCCT
TCCTTCCTTCCACATCCTCAAGGTCCAAGGGTTAAACAATCTGTTTGGAG
AGTACATCACACGATGCCTGTACAGCAAAACTTGGTCGCTTAGGGAGGCC
GCTATTATCAAGGTAAGAGTACCGCTAATGATTACCGCCAAATGCACGCC
AGGGCATCCTTGGCAACTCCCTACATTAGCTCCACCGTTTCTGAGCGTAA
ATGCTACAGCATAATATTTGGTGGAAGTCCGCGGTCCGGTCCGGTCCGGC
ACGATTTCTTGGTGTCTCTCTGCATCATTCTGGTGTGTGTTAGATGTGGC
TACTGTTGATGTGGCTACTGTTTGTCTCGAAATGTCTGTGTGTTTTATAT
TTGTGTTTATGTTTGTGTTTTATGCCTTCTTCCCCCCCAAAAAAACATAT
GAACTCAATCAAACTCTTCGAACATCCACACTATATCCTATATACTTAAT
TACACCACGAGTGGTAAAGTTATCATCAAGGGGAGGGGAGGGACTATGAC
CAACTATCGTCAGCTGTTTATATGTCGTCTTTGTGTGTGGCTTATATAGT
TTTTGTGTGTGTGTATTTAATAAATTGCACATAACCGCGCAAACCGGGTC
TGTCATGCTAGCTCTTCTAGGCTACTATCGCAGTGATCCTCCCAGTGTGT
GTGTGTGTGTGTGTGTTGGTATGTCGTCTTTGTATGCGTGTTTTATATGT
CGGTGTATATTGATTGCCTTATGCCTCCGTATGTGCTCTATCTTTGCTTT
ATGCATGTATCCTTTGTTTGTCTTATCTATGTGCGTACGTGTGTCTTGCG
TTTGGGTCTTATGTATGTGCGTATCTTATTCTCGTCGGCAGATCAAGCTG
ATGTTGCCATCACTTGAGGAAGATCCGGGCATTAACTCGGCGTTGACGGA
AATGTGTCAGGTCCTCAGGGTGGGATTTGAGGACAAAATCGCGCAGGCAA
GTCGTCAGGGATAG
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Coding sequence (CDS) from alignment at H-elongata_contig1880:303..1916+

>mRNA_H-elongata_contig1880.5139.1 ID=mRNA_H-elongata_contig1880.5139.1|Name=mRNA_H-elongata_contig1880.5139.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig1880:303..1916+ (Himanthalia elongata Himel1 dioecious)
TTTTCTCCTGGGGAGCACCCGCTTGAAGGAGTTCCGAACATGGAGAATCT
GGCAGCACCAGAGGCTCTCAGCGCCAAGGTGGACCTATCCGAGTTTTCTC
CTGGGGAGCACCCGCTTGAAGGAGTTCCGAACATGGAGAATCTGGCAGCA
CCAGAGGCTCTCAGCGCCAAGGTGGACCTATCCGAGGTCCAAGGGTTAAA
CAATCTGTTTGGAGAGTACATCACACGATGCCTGTACAGCAAAACTTGGT
CGCTTAGGGAGGCCGCTATTATCAAGGTCCAAGGGTTAAACAATCTGTTT
GGAGAGTACATCACACGATGCCTGTACAGCAAAACTTGGTCGCTTAGGGA
GGCCGCTATTATCAAGATCAAGCTGATGTTGCCATCACTTGAGGAAGATC
CGGGCATTAACTCGGCGTTGACGGAAATGTGTCAGGTCCTCAGGGTGGGA
TTTGAGGACAAAATCGCGCAGGCAAGTCGTCAGGGATAGATCAAGCTGAT
GTTGCCATCACTTGAGGAAGATCCGGGCATTAACTCGGCGTTGACGGAAA
TGTGTCAGGTCCTCAGGGTGGGATTTGAGGACAAAATCGCGCAGGCAAGT
CGTCAGGGATAG
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