mRNA_H-elongata_contig187929.5135.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig187929.5135.1
Unique NamemRNA_H-elongata_contig187929.5135.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig187929.5135.1 vs. uniprot
Match: Q2TUF7_9PHAE (Ribosomal protein S3 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUF7_9PHAE)

HSP 1 Score: 519 bits (1336), Expect = 3.520e-185
Identity = 258/274 (94.16%), Postives = 265/274 (96.72%), Query Frame = 1
Query:    1 MAQKAHPNSIRPLDSPYQGCTHWDEARFYYILSTVHKLIESCCLGTTHYLDAIKINRQHGLILVEANLIHVHCRSKRHLKSRRYKENKGEIKKESWTLVACRLHTAVELIQKFTGTKKVTIRINRLKIYTRSIPKSVRKQIAYYARSAHQAKYDYARSGLQLLSLVIENKASAFSLSRYIIQNISSRQRRKRHYEFLGYLKQAFAALQKYKKIQGVKIQIKGRFTHKAKGRSKIWKYQMGQMPLSQISTPIQAEYVQTQTGYGSVGLKVWICNW 822
            MAQKAHPNSIRPLDSPYQGCTHWDEARFYYILSTVHKLIESCCLGTTHYLD IKINRQHGLILVEANLIHVH RSKRHLKSRRYKENKGEIKKESWTLVACRLH AVELIQ FTGTKKVTIRINRLK YTRSIPKS RKQ+AYYARSAHQAKYDYAR+G+QLLSLVI+NKASA SLSR+IIQNISSRQRRKRHYEFLGYLKQAF ALQKYKKIQGVKIQIKGRFTHKAKGRSK+WKYQMGQMPLSQIS PIQAEY+QTQTGYGSVGLKVWICNW
Sbjct:    1 MAQKAHPNSIRPLDSPYQGCTHWDEARFYYILSTVHKLIESCCLGTTHYLDKIKINRQHGLILVEANLIHVHSRSKRHLKSRRYKENKGEIKKESWTLVACRLHRAVELIQNFTGTKKVTIRINRLKTYTRSIPKSARKQMAYYARSAHQAKYDYARTGMQLLSLVIKNKASATSLSRFIIQNISSRQRRKRHYEFLGYLKQAFTALQKYKKIQGVKIQIKGRFTHKAKGRSKVWKYQMGQMPLSQISMPIQAEYMQTQTGYGSVGLKVWICNW 274          
BLAST of mRNA_H-elongata_contig187929.5135.1 vs. uniprot
Match: A0A8F0FD58_9PHAE (Ribosomal protein S3 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0FD58_9PHAE)

HSP 1 Score: 427 bits (1099), Expect = 2.780e-149
Identity = 203/273 (74.36%), Postives = 243/273 (89.01%), Query Frame = 1
Query:    1 MAQKAHPNSIRPLDSPYQGCTHWDEARFYYILSTVHKLIESCCLGTTHYLDAIKINRQHGLILVEANLIHVHCRSKRHLKSRRYKENKGEIKKESWTLVACRLHTAVELIQKFTGTKKVTIRINRLKIYTRSIPKSVRKQIAYYARSAHQAKYDYARSGLQLLSLVIENKASAFSLSRYIIQNISSRQRRKRHYEFLGYLKQAFAALQKYKKIQGVKIQIKGRFTHKAKGRSKIWKYQMGQMPLSQISTPIQAEYVQTQTGYGSVGLKVWICN 819
            MAQKAHP  +RP    YQGCTHWDEARFYYI+ST+HKL+ESCCLGTTHYLD I+INR  GL+L+EA+LIH+H RSKR L+SRRYKENK +IKK+SWTLVACRLH+AV+LIQKFTGTKKVT++INRLK YTRS+PK  R+Q+AY+A+S +  +YDYAR G+QL+ L++ NKASA SLSR++ QNI SRQRRKRHY+FLGYLKQ F ALQ+Y+ IQG+KIQIKGRFTHKAKGRS++WKYQMGQMP+SQ++  IQA+Y QTQTGYGSVG+KVWICN
Sbjct:    1 MAQKAHPTILRPTGGIYQGCTHWDEARFYYIVSTIHKLLESCCLGTTHYLDKIQINRHLGLVLIEADLIHLHFRSKRRLRSRRYKENKLKIKKQSWTLVACRLHSAVQLIQKFTGTKKVTLKINRLKAYTRSVPKPARRQMAYFAKSFNHIRYDYARYGMQLMYLLVRNKASALSLSRFLKQNICSRQRRKRHYQFLGYLKQGFQALQEYRSIQGLKIQIKGRFTHKAKGRSRVWKYQMGQMPISQLNKTIQAKYEQTQTGYGSVGIKVWICN 273          
BLAST of mRNA_H-elongata_contig187929.5135.1 vs. uniprot
Match: W5RGE7_COSCS (Ribosomal protein S3 n=50 Tax=Phaeophyceae TaxID=2870 RepID=W5RGE7_COSCS)

HSP 1 Score: 417 bits (1073), Expect = 3.730e-145
Identity = 198/276 (71.74%), Postives = 242/276 (87.68%), Query Frame = 1
Query:    1 MAQKAHPNSIRPLDSPYQGCTHWDEARFYYILSTVHKLIESCCLGTTHYLDAIKINRQHGLILVEANLIHVHCRSKRHLKSRRYKENKGEIKKESWTLVACRLHTAVELIQKFTGTKKVTIRINRLKIYTRSIPKSVRKQIAYYARSAHQAKYDYARSGLQLLSLVIENKASAFSLSRYIIQNISSRQRRKRHYEFLGYLKQAFAALQKYKKIQGVKIQIKGRFTHKAKGRSKIWKYQMGQMPLSQISTPIQAEYVQTQTGYGSVGLKVWICNWGK 828
            MAQKAHP  +RP ++ YQGCTHWDE RFY+ILST+ KL+ESCCLGTTHYLD I++NR  GLIL+EANLIH+H RSKR LKSRRYKEN+ + KK+SWT+VACRL +A++LIQKFTGTKKVT+RINRLK YTRS+PK  R+Q+AY+ +S +  +YDYAR G+QL+ L+I+ KASA SL+R++ QNI SRQRRKRHY+FL Y+KQ F ALQ+YK+IQG+KIQIKGRFTHKAKGRS++WKYQMGQMP+SQ++  IQA+Y QTQTGYGSVGLK+WICNW K
Sbjct:    1 MAQKAHPTILRPGNNLYQGCTHWDEPRFYFILSTIKKLMESCCLGTTHYLDKIQVNRHLGLILIEANLIHLHFRSKRRLKSRRYKENQVKSKKQSWTVVACRLQSALKLIQKFTGTKKVTLRINRLKTYTRSVPKPARRQMAYFTKSFNHIRYDYARYGMQLMYLLIKKKASAASLTRFLTQNICSRQRRKRHYQFLAYIKQGFQALQQYKEIQGLKIQIKGRFTHKAKGRSRVWKYQMGQMPISQLNKSIQADYAQTQTGYGSVGLKIWICNWEK 276          
BLAST of mRNA_H-elongata_contig187929.5135.1 vs. uniprot
Match: V9PA61_UNDPI (Ribosomal protein S3 n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=V9PA61_UNDPI)

HSP 1 Score: 413 bits (1062), Expect = 1.700e-143
Identity = 198/274 (72.26%), Postives = 237/274 (86.50%), Query Frame = 1
Query:    1 MAQKAHPNSIRPLDSPYQGCTHWDEARFYYILSTVHKLIESCCLGTTHYLDAIKINRQHGLILVEANLIHVHCRSKRHLKSRRYKENKGEIKKESWTLVACRLHTAVELIQKFTGTKKVTIRINRLKIYTRSIPKSVRKQIAYYARSAHQAKYDYARSGLQLLSLVIENKASAFSLSRYIIQNISSRQRRKRHYEFLGYLKQAFAALQKYKKIQGVKIQIKGRFTHKAKGRSKIWKYQMGQMPLSQISTPIQAEYVQTQTGYGSVGLKVWICNW 822
            MAQKAHP  +R  ++ YQGCTHWDE +FY+ILS + KLIESCCL TTHYLD I+INR  GLI +E NLIH+H RSKR LKSRRYKEN+   KK+SWT+VACRL +A++LIQKFTGTKKV +RI+RLK YTRS+PK  R+Q+AY+ +S +  KYDYARSG+QL+ L+I+NKASA SL+R++ QNI SRQRRKRHY+FL Y+KQ F ALQ+YKKIQG+KIQIKGRFTHKAKGRSK+WKYQMGQMP+SQ++ PIQAEY QTQTGYGSVGLK+WICNW
Sbjct:    1 MAQKAHPTILRSNNNLYQGCTHWDEPKFYFILSIIQKLIESCCLETTHYLDKIQINRHLGLIFIETNLIHLHFRSKRRLKSRRYKENQVITKKQSWTVVACRLQSAIKLIQKFTGTKKVILRIHRLKTYTRSVPKPARRQMAYFTKSFNHTKYDYARSGMQLIYLLIKNKASAVSLTRFLKQNICSRQRRKRHYQFLTYIKQGFQALQEYKKIQGLKIQIKGRFTHKAKGRSKVWKYQMGQMPISQLNKPIQAEYTQTQTGYGSVGLKIWICNW 274          
BLAST of mRNA_H-elongata_contig187929.5135.1 vs. uniprot
Match: A0A4D6E526_9PHAE (Ribosomal protein S3 n=2 Tax=Laminariaceae TaxID=33636 RepID=A0A4D6E526_9PHAE)

HSP 1 Score: 412 bits (1058), Expect = 4.840e-143
Identity = 198/273 (72.53%), Postives = 237/273 (86.81%), Query Frame = 1
Query:    1 MAQKAHPNSIRPLDSPYQGCTHWDEARFYYILSTVHKLIESCCLGTTHYLDAIKINRQHGLILVEANLIHVHCRSKRHLKSRRYKENKGEIKKESWTLVACRLHTAVELIQKFTGTKKVTIRINRLKIYTRSIPKSVRKQIAYYARSAHQAKYDYARSGLQLLSLVIENKASAFSLSRYIIQNISSRQRRKRHYEFLGYLKQAFAALQKYKKIQGVKIQIKGRFTHKAKGRSKIWKYQMGQMPLSQISTPIQAEYVQTQTGYGSVGLKVWICN 819
            MAQKAHP  +RP ++ YQGCTHWDE RFY+IL+T+ KLIESC LGTTHYLD IKINR  GLI +E N+IH+H RSKR LKSRRYKENK   KK+SWT+VACRL TA+ELIQKFTGTKKVT+R+NRLK YTRS+PK  R+Q+AY+ +S +  KYDYAR G+QL+ L+I+NKA+  SL+R++IQNI SRQRRKRHY+FL Y+KQ F +LQ+YKKIQG+KIQIKGRFTHKAKGRS+IWKYQMGQMP+SQ++  I+AEY QTQTGYGSVGLK+WICN
Sbjct:    1 MAQKAHPTILRPRNNLYQGCTHWDEPRFYFILTTIKKLIESCFLGTTHYLDKIKINRHLGLIFIEINIIHLHFRSKRRLKSRRYKENKIINKKQSWTIVACRLQTAIELIQKFTGTKKVTLRVNRLKTYTRSVPKPARRQMAYFTKSFNHIKYDYARYGIQLMYLLIKNKANTSSLTRFLIQNICSRQRRKRHYQFLAYIKQGFQSLQEYKKIQGLKIQIKGRFTHKAKGRSRIWKYQMGQMPISQLNKTIKAEYEQTQTGYGSVGLKIWICN 273          
BLAST of mRNA_H-elongata_contig187929.5135.1 vs. uniprot
Match: A0A8F0JZR6_9PHAE (Ribosomal protein S3 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZR6_9PHAE)

HSP 1 Score: 406 bits (1043), Expect = 9.290e-141
Identity = 194/273 (71.06%), Postives = 236/273 (86.45%), Query Frame = 1
Query:    1 MAQKAHPNSIRPLDSPYQGCTHWDEARFYYILSTVHKLIESCCLGTTHYLDAIKINRQHGLILVEANLIHVHCRSKRHLKSRRYKENKGEIKKESWTLVACRLHTAVELIQKFTGTKKVTIRINRLKIYTRSIPKSVRKQIAYYARSAHQAKYDYARSGLQLLSLVIENKASAFSLSRYIIQNISSRQRRKRHYEFLGYLKQAFAALQKYKKIQGVKIQIKGRFTHKAKGRSKIWKYQMGQMPLSQISTPIQAEYVQTQTGYGSVGLKVWICN 819
            MAQKAHP  +RP+ +P+QG THWDEARFYYI+ST+  L+ESCCLGTTHYL+ I+I+R  GLI++EA+L+H+H RSKR L+SRRYKENK +I+ +SWT+VACRL  AVELIQKFTGTK VT++INRLK YTRS+PK VR+Q+AY+A+  +  KYDYAR GLQL+ L+++ KASA SLSR++ QNI SRQRRKRHY+FL YLKQ   A+Q YK+IQG+KIQIKGRFTHKAKGRS++WKYQMG+MP SQIS PIQAEY QTQTGYGSVG+KVWI N
Sbjct:    1 MAQKAHPIILRPISNPHQGATHWDEARFYYIISTIQNLVESCCLGTTHYLNKIQISRHLGLIIIEADLLHLHFRSKRRLRSRRYKENKKKIQPQSWTIVACRLQNAVELIQKFTGTKTVTLKINRLKTYTRSVPKPVRRQMAYFAKPFNSVKYDYARYGLQLIHLIVKKKASALSLSRFLKQNICSRQRRKRHYQFLSYLKQGLKAMQDYKEIQGLKIQIKGRFTHKAKGRSRVWKYQMGRMPTSQISKPIQAEYTQTQTGYGSVGIKVWIYN 273          
BLAST of mRNA_H-elongata_contig187929.5135.1 vs. uniprot
Match: A0A8F0K0Q6_9PHAE (Ribosomal protein S3 n=2 Tax=Ecklonia TaxID=105406 RepID=A0A8F0K0Q6_9PHAE)

HSP 1 Score: 404 bits (1038), Expect = 5.350e-140
Identity = 191/272 (70.22%), Postives = 234/272 (86.03%), Query Frame = 1
Query:    1 MAQKAHPNSIRPLDSPYQGCTHWDEARFYYILSTVHKLIESCCLGTTHYLDAIKINRQHGLILVEANLIHVHCRSKRHLKSRRYKENKGEIKKESWTLVACRLHTAVELIQKFTGTKKVTIRINRLKIYTRSIPKSVRKQIAYYARSAHQAKYDYARSGLQLLSLVIENKASAFSLSRYIIQNISSRQRRKRHYEFLGYLKQAFAALQKYKKIQGVKIQIKGRFTHKAKGRSKIWKYQMGQMPLSQISTPIQAEYVQTQTGYGSVGLKVWIC 816
            MAQK HP  +RP ++ YQGCTHW+E +FY+I+S +HKLI+SCCLGTTHYLD I++NR  GLIL+E +LIH H RSKR LKSRRYKEN+   KK+SWT++ACRL  A ELIQ+FTGTKKVT+RINRLKIYTRS+P+  R+Q+AY+ +S +  KYDYAR G+QL+ L+I+NKASA +LSR++ QNI SRQRRKRHY+FL Y+KQ F ALQ+YKKIQG+K+QIKGRFTHKAKGRS+IWKYQ+GQMP+SQ+   IQAEY QTQTGYGSVGLK+WIC
Sbjct:    1 MAQKTHPTILRPNNNLYQGCTHWNEPKFYFIVSNIHKLIKSCCLGTTHYLDKIQVNRHLGLILIEIDLIHFHFRSKRRLKSRRYKENQMSSKKQSWTVIACRLQRATELIQQFTGTKKVTLRINRLKIYTRSVPRPARRQMAYFTKSFNHIKYDYARYGMQLMHLIIKNKASASTLSRFLKQNICSRQRRKRHYQFLAYIKQGFQALQEYKKIQGLKLQIKGRFTHKAKGRSRIWKYQIGQMPISQLKKTIQAEYAQTQTGYGSVGLKIWIC 272          
BLAST of mRNA_H-elongata_contig187929.5135.1 vs. uniprot
Match: A0A8F0FCQ9_9PHAE (Ribosomal protein S3 n=1 Tax=Postelsia palmaeformis TaxID=105414 RepID=A0A8F0FCQ9_9PHAE)

HSP 1 Score: 400 bits (1029), Expect = 1.250e-138
Identity = 190/272 (69.85%), Postives = 232/272 (85.29%), Query Frame = 1
Query:    1 MAQKAHPNSIRPLDSPYQGCTHWDEARFYYILSTVHKLIESCCLGTTHYLDAIKINRQHGLILVEANLIHVHCRSKRHLKSRRYKENKGEIKKESWTLVACRLHTAVELIQKFTGTKKVTIRINRLKIYTRSIPKSVRKQIAYYARSAHQAKYDYARSGLQLLSLVIENKASAFSLSRYIIQNISSRQRRKRHYEFLGYLKQAFAALQKYKKIQGVKIQIKGRFTHKAKGRSKIWKYQMGQMPLSQISTPIQAEYVQTQTGYGSVGLKVWIC 816
            MAQKAHP  +RP  + YQGCTHWDE +F++IL+T+ KLIESCCLGTTHYLD IKINR  GLILVE +L+H+H RSKR LKSRRYKEN+   KK+SWT+VACRL  A ELIQKFTG KK+ +R+NRLKIYTR+IPK  R+Q+AY+ +S +  +YDYAR G+QL+ L+++NK SA SL+R++ QNI SRQRRKRHY+FL Y+KQ F ALQ+YKKIQG+KIQIKGRFTHKAKGRS++WKYQ+GQMP+SQ++  IQ EY QTQTGYGSVGLK+WIC
Sbjct:    1 MAQKAHPTILRPEKNLYQGCTHWDEPKFFFILTTIQKLIESCCLGTTHYLDKIKINRHLGLILVETDLVHLHFRSKRRLKSRRYKENRIINKKQSWTVVACRLQNAAELIQKFTGAKKIVLRVNRLKIYTRAIPKPARRQMAYFTKSFNNIRYDYARYGMQLMYLLVKNKVSAASLARFLAQNIYSRQRRKRHYQFLAYIKQGFQALQEYKKIQGLKIQIKGRFTHKAKGRSRVWKYQIGQMPISQLNKTIQTEYAQTQTGYGSVGLKIWIC 272          
BLAST of mRNA_H-elongata_contig187929.5135.1 vs. uniprot
Match: A0A7T1TUS4_9PHAE (Ribosomal protein S3 n=4 Tax=Lessonia TaxID=105411 RepID=A0A7T1TUS4_9PHAE)

HSP 1 Score: 397 bits (1019), Expect = 4.170e-137
Identity = 188/273 (68.86%), Postives = 235/273 (86.08%), Query Frame = 1
Query:    1 MAQKAHPNSIRPLDSPYQGCTHWDEARFYYILSTVHKLIESCCLGTTHYLDAIKINRQHGLILVEANLIHVHCRSKRHLKSRRYKENKGEIKKESWTLVACRLHTAVELIQKFTGTKKVTIRINRLKIYTRSIPKSVRKQIAYYARSAHQAKYDYARSGLQLLSLVIENKASAFSLSRYIIQNISSRQRRKRHYEFLGYLKQAFAALQKYKKIQGVKIQIKGRFTHKAKGRSKIWKYQMGQMPLSQISTPIQAEYVQTQTGYGSVGLKVWICN 819
            MAQK++P  +RP+++ YQGCTHWDE RFY+I+ST+ KLIESCCLGTTHYLD ++INR  GLI +EANL+H+H  SK  LKSRRYKEN+ + KK+SWT++ACRL  A ELIQKFTGTKKV +RINR+K YTRS+PK  R+Q+AY+ +S +  +YDYAR G+QL+ L+I+NKAS  SL+R++ QNI SRQRRKRHY+FL Y+KQ F ALQ+YK+IQG+KIQIKGRFTHKAKGRSK+WKYQMGQMP+SQ++  I+A+Y QTQTGYGSVGLKVWIC+
Sbjct:    1 MAQKSNPTILRPVNTLYQGCTHWDEPRFYFIISTIKKLIESCCLGTTHYLDKLQINRHLGLIFIEANLLHLHFNSKHRLKSRRYKENQIKSKKQSWTVLACRLQNAAELIQKFTGTKKVILRINRIKAYTRSVPKPTRRQMAYFTKSFNHIRYDYARYGIQLMYLLIKNKASVTSLARFLKQNICSRQRRKRHYQFLAYIKQGFQALQEYKEIQGLKIQIKGRFTHKAKGRSKMWKYQMGQMPISQLNKNIKAKYTQTQTGYGSVGLKVWICH 273          
BLAST of mRNA_H-elongata_contig187929.5135.1 vs. uniprot
Match: A0A2R4QQ86_9PHAE (Ribosomal protein S3 n=3 Tax=Fucus TaxID=3011 RepID=A0A2R4QQ86_9PHAE)

HSP 1 Score: 396 bits (1017), Expect = 8.400e-137
Identity = 191/273 (69.96%), Postives = 233/273 (85.35%), Query Frame = 1
Query:    1 MAQKAHPNSIRPLDSPYQGCTHWDEARFYYILSTVHKLIESCCLGTTHYLDAIKINRQHGLILVEANLIHVHCRSKRHLKSRRYKENKGEIKKESWTLVACRLHTAVELIQKFTGTKKVTIRINRLKIYTRSIPKSVRKQIAYYARSAHQAKYDYARSGLQLLSLVIENKASAFSLSRYIIQNISSRQRRKRHYEFLGYLKQAFAALQKYKKIQGVKIQIKGRFTHKAKGRSKIWKYQMGQMPLSQISTPIQAEYVQTQTGYGSVGLKVWICN 819
            MAQKA+P ++RP +S YQ  +HWDE RFYYILST++KLIESCCLGTTHY++ I +N+  G ++++ N IH+H RSKR LKSRRYKENK  IKK+SWT+VA RL  A++LIQ FTGTKKVTIR+NRLK YTR++PK  RKQIAYY ++ H  KYDYAR G+QL+ LV++NKA+A SL R+I QN+ SRQ+RKRHYEFL YLKQ+F ALQKYKKIQG+KIQIKGRFTHKAKGRS++WKYQ+GQMPLS++S+ IQA Y QTQTGYG VGLK+WICN
Sbjct:    1 MAQKANPITLRPTNSFYQSYSHWDEPRFYYILSTINKLIESCCLGTTHYINDITVNKFLGSVIIKVNFIHLHTRSKRRLKSRRYKENKLTIKKQSWTIVAYRLQKAIKLIQNFTGTKKVTIRVNRLKTYTRAVPKYARKQIAYYTKNFHNLKYDYARYGIQLICLVVKNKANADSLCRFIEQNVCSRQKRKRHYEFLRYLKQSFQALQKYKKIQGLKIQIKGRFTHKAKGRSRVWKYQIGQMPLSKLSSKIQARYKQTQTGYGGVGLKIWICN 273          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig187929.5135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q2TUF7_9PHAE3.520e-18594.16Ribosomal protein S3 n=2 Tax=Desmarestia TaxID=313... [more]
A0A8F0FD58_9PHAE2.780e-14974.36Ribosomal protein S3 n=2 Tax=Laminariales TaxID=28... [more]
W5RGE7_COSCS3.730e-14571.74Ribosomal protein S3 n=50 Tax=Phaeophyceae TaxID=2... [more]
V9PA61_UNDPI1.700e-14372.26Ribosomal protein S3 n=1 Tax=Undaria pinnatifida T... [more]
A0A4D6E526_9PHAE4.840e-14372.53Ribosomal protein S3 n=2 Tax=Laminariaceae TaxID=3... [more]
A0A8F0JZR6_9PHAE9.290e-14171.06Ribosomal protein S3 n=1 Tax=Chorda asiatica TaxID... [more]
A0A8F0K0Q6_9PHAE5.350e-14070.22Ribosomal protein S3 n=2 Tax=Ecklonia TaxID=105406... [more]
A0A8F0FCQ9_9PHAE1.250e-13869.85Ribosomal protein S3 n=1 Tax=Postelsia palmaeformi... [more]
A0A7T1TUS4_9PHAE4.170e-13768.86Ribosomal protein S3 n=4 Tax=Lessonia TaxID=105411... [more]
A0A2R4QQ86_9PHAE8.400e-13769.96Ribosomal protein S3 n=3 Tax=Fucus TaxID=3011 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig187929contigH-elongata_contig187929:162..1020 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size859
Cds size831
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930074.842776-UTR-H-elongata_contig187929:161..1891622930074.842776-UTR-H-elongata_contig187929:161..189Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig187929 162..189 -
1691679271.000056-UTR-H-elongata_contig187929:161..1891691679271.000056-UTR-H-elongata_contig187929:161..189Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig187929 162..189 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930074.8611045-CDS-H-elongata_contig187929:189..10201622930074.8611045-CDS-H-elongata_contig187929:189..1020Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187929 190..1020 -
1691679271.0092635-CDS-H-elongata_contig187929:189..10201691679271.0092635-CDS-H-elongata_contig187929:189..1020Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187929 190..1020 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig187929.5135.1prot_H-elongata_contig187929.5135.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig187929 190..1020 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig187929.5135.1

>prot_H-elongata_contig187929.5135.1 ID=prot_H-elongata_contig187929.5135.1|Name=mRNA_H-elongata_contig187929.5135.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=277bp
MAQKAHPNSIRPLDSPYQGCTHWDEARFYYILSTVHKLIESCCLGTTHYL
DAIKINRQHGLILVEANLIHVHCRSKRHLKSRRYKENKGEIKKESWTLVA
CRLHTAVELIQKFTGTKKVTIRINRLKIYTRSIPKSVRKQIAYYARSAHQ
AKYDYARSGLQLLSLVIENKASAFSLSRYIIQNISSRQRRKRHYEFLGYL
KQAFAALQKYKKIQGVKIQIKGRFTHKAKGRSKIWKYQMGQMPLSQISTP
IQAEYVQTQTGYGSVGLKVWICNWGK*
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mRNA from alignment at H-elongata_contig187929:162..1020-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig187929.5135.1 ID=mRNA_H-elongata_contig187929.5135.1|Name=mRNA_H-elongata_contig187929.5135.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=859bp|location=Sequence derived from alignment at H-elongata_contig187929:162..1020- (Himanthalia elongata Himel1 dioecious)
ATGGCACAAAAAGCTCATCCTAATAGCATACGCCCTTTAGACAGCCCTTA TCAGGGATGTACTCATTGGGACGAAGCACGTTTTTACTACATATTATCAA CAGTTCATAAGCTTATAGAGTCATGTTGCTTAGGAACTACTCATTACCTG GATGCGATTAAGATTAATCGCCAACATGGTTTAATTCTTGTAGAAGCTAA TCTCATCCACGTACACTGTCGATCAAAACGTCATTTAAAATCTCGCCGTT ATAAAGAAAATAAGGGAGAAATTAAAAAAGAGTCGTGGACTCTAGTCGCA TGTCGACTACATACAGCAGTAGAGCTAATTCAAAAATTTACAGGAACAAA AAAAGTAACTATTAGAATAAATAGATTAAAGATCTATACACGATCTATCC CGAAATCTGTCCGAAAGCAAATTGCTTATTATGCTAGAAGCGCTCATCAA GCAAAATACGATTATGCCCGCTCTGGTCTGCAACTTCTCTCACTTGTTAT TGAAAATAAAGCAAGTGCCTTTAGCCTATCCAGATATATAATACAAAACA TATCCTCAAGACAAAGACGAAAAAGACATTATGAATTTTTGGGGTACTTA AAACAAGCATTTGCAGCTTTACAAAAATATAAAAAAATTCAGGGCGTTAA AATTCAAATAAAAGGACGCTTTACTCATAAAGCCAAAGGTCGAAGTAAGA TTTGGAAATACCAAATGGGGCAAATGCCACTTAGTCAAATCAGTACTCCG ATCCAAGCAGAATATGTACAGACACAAACTGGATATGGAAGTGTAGGTTT AAAGGTTTGGATTTGTAATTGGGGTAAATAAAACCAAAAAAAATTATGTT AACACAACC
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Coding sequence (CDS) from alignment at H-elongata_contig187929:162..1020-

>mRNA_H-elongata_contig187929.5135.1 ID=mRNA_H-elongata_contig187929.5135.1|Name=mRNA_H-elongata_contig187929.5135.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1662bp|location=Sequence derived from alignment at H-elongata_contig187929:162..1020- (Himanthalia elongata Himel1 dioecious)
ATGGCACAAAAAGCTCATCCTAATAGCATACGCCCTTTAGACAGCCCTTA
TCAGGGATGTACTCATTGGGACGAAGCACGTTTTTACTACATATTATCAA
CAGTTCATAAGCTTATAGAGTCATGTTGCTTAGGAACTACTCATTACCTG
GATGCGATTAAGATTAATCGCCAACATGGTTTAATTCTTGTAGAAGCTAA
TCTCATCCACGTACACTGTCGATCAAAACGTCATTTAAAATCTCGCCGTT
ATAAAGAAAATAAGGGAGAAATTAAAAAAGAGTCGTGGACTCTAGTCGCA
TGTCGACTACATACAGCAGTAGAGCTAATTCAAAAATTTACAGGAACAAA
AAAAGTAACTATTAGAATAAATAGATTAAAGATCTATACACGATCTATCC
CGAAATCTGTCCGAAAGCAAATTGCTTATTATGCTAGAAGCGCTCATCAA
GCAAAATACGATTATGCCCGCTCTGGTCTGCAACTTCTCTCACTTGTTAT
TGAAAATAAAGCAAGTGCCTTTAGCCTATCCAGATATATAATACAAAACA
TATCCTCAAGACAAAGACGAAAAAGACATTATGAATTTTTGGGGTACTTA
AAACAAGCATTTGCAGCTTTACAAAAATATAAAAAAATTCAGGGCGTTAA
AATTCAAATAAAAGGACGCTTTACTCATAAAGCCAAAGGTCGAAGTAAGA
TTTGGAAATACCAAATGGGGCAAATGCCACTTAGTCAAATCAGTACTCCG
ATCCAAGCAGAATATGTACAGACACAAACTGGATATGGAAGTGTAGGTTT
AAAGGTTTGGATTTGTAATTGGGGTAAATAAATGGCACAAAAAGCTCATC
CTAATAGCATACGCCCTTTAGACAGCCCTTATCAGGGATGTACTCATTGG
GACGAAGCACGTTTTTACTACATATTATCAACAGTTCATAAGCTTATAGA
GTCATGTTGCTTAGGAACTACTCATTACCTGGATGCGATTAAGATTAATC
GCCAACATGGTTTAATTCTTGTAGAAGCTAATCTCATCCACGTACACTGT
CGATCAAAACGTCATTTAAAATCTCGCCGTTATAAAGAAAATAAGGGAGA
AATTAAAAAAGAGTCGTGGACTCTAGTCGCATGTCGACTACATACAGCAG
TAGAGCTAATTCAAAAATTTACAGGAACAAAAAAAGTAACTATTAGAATA
AATAGATTAAAGATCTATACACGATCTATCCCGAAATCTGTCCGAAAGCA
AATTGCTTATTATGCTAGAAGCGCTCATCAAGCAAAATACGATTATGCCC
GCTCTGGTCTGCAACTTCTCTCACTTGTTATTGAAAATAAAGCAAGTGCC
TTTAGCCTATCCAGATATATAATACAAAACATATCCTCAAGACAAAGACG
AAAAAGACATTATGAATTTTTGGGGTACTTAAAACAAGCATTTGCAGCTT
TACAAAAATATAAAAAAATTCAGGGCGTTAAAATTCAAATAAAAGGACGC
TTTACTCATAAAGCCAAAGGTCGAAGTAAGATTTGGAAATACCAAATGGG
GCAAATGCCACTTAGTCAAATCAGTACTCCGATCCAAGCAGAATATGTAC
AGACACAAACTGGATATGGAAGTGTAGGTTTAAAGGTTTGGATTTGTAAT
TGGGGTAAATAA
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