prot_H-elongata_contig187900.5134.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig187900.5134.1
Unique Nameprot_H-elongata_contig187900.5134.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length54
Homology
[Close]
BLAST of mRNA_H-elongata_contig187900.5134.1 vs. uniprot
Match: D7FIK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK7_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.390e-17
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 0 
Query:    1 RWEEALTTLREMEAMDGVTKGGEWRKALHLLLRMINSGVQPDTIAYNTSIRA 52
            RW+EAL  LREMEA D VT GGEWRKALHLLL+MINSG++PDTIAYN SI A
Sbjct:  650 RWKEALEILREMEARDDVT-GGEWRKALHLLLKMINSGIEPDTIAYNASISA 700
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig187900.5134.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIK7_ECTSI1.390e-1778.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 15..43
e-value: 3.4E-5
score: 21.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..53
e-value: 3.1E-8
score: 35.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig187900contigH-elongata_contig187900:697..1087 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig187900.5134.1mRNA_H-elongata_contig187900.5134.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig187900 697..1087 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig187900.5134.1 ID=prot_H-elongata_contig187900.5134.1|Name=mRNA_H-elongata_contig187900.5134.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
RWEEALTTLREMEAMDGVTKGGEWRKALHLLLRMINSGVQPDTIAYNTSI
RAR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf