mRNA_H-elongata_contig1879.5133.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1879.5133.1
Unique NamemRNA_H-elongata_contig1879.5133.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1879.5133.1 vs. uniprot
Match: D7FSK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK1_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 5.460e-25
Identity = 120/309 (38.83%), Postives = 151/309 (48.87%), Query Frame = 1
Query:    1 MRHMTKVYNKVWDSYVQGKPGGILPSGSQSEDALDYVLNGVYAITAGN---PIEEEYLDDDTENDAHGEGGGG--DAGRR*GIF----IGAGRGRRE*EAARQ*GGSRDAEEQKPDDHSRDKGVDGLL*RSK**RGWISGQTRQLDGPVSSHLLPY-REARQQ*GP*PPYRMEKVRPEESQRKTDGEEGIAQHQRVEWIEGEQSVHRGR--SLVVGDPNIT--------GSGESESLAEVK-ETAAVAAANAQTQARQIHETNTAKLVRTVEALSAVVVSRHALDQGATARARMADAR-KRKRKIEALR 861
            MR M K YNKVWDS V+G+PG  LPSG Q  DALDY+LNGVY ++ GN   PIE E +DDD +NDA   G  G  D GR  G      +  G G  E E      G    E    +  S D      +  +        G   + D  +  +LL Y    R      P  R        + RKT G +G    Q+ +      S   G   S    D +++        G+GES S A+VK E  AVAAANAQ QAR++ +T+T KLV  VEA SA VVSR ALD+ A  R+    AR  +K KI+ LR
Sbjct:    1 MREMKKTYNKVWDSLVEGQPGENLPSGEQEGDALDYLLNGVYHLSTGNAEDPIELEDIDDDLDNDADDGGAAGLQDNGRNDGESPPGQVEDGGGAEESEGGAPAVGGIKEEPAVGNQGSGDGAPSDNIEEAD------GGYPDRPDKWMHPYLLTYCLIGRPSSSEDPDLR--------TTRKTSGPKGRGGKQKSKRGSPGTSDESGSETSGAYTDVDLSSNAIRMFAGAGESRSRAQVKKEHEAVAAANAQEQARRVQQTHTGKLVTAVEAWSAAVVSRQALDEEAAHRSHWDYARLAKKAKIDDLR 295          
BLAST of mRNA_H-elongata_contig1879.5133.1 vs. uniprot
Match: A0A6H5JWP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWP9_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 7.330e-25
Identity = 56/88 (63.64%), Postives = 65/88 (73.86%), Query Frame = 2
Query:  356 SEDRNDEEGGFPDRPDNWMDPYLLTYCLIGRPDSSEDPDLHTAWRKSGPKSHKGKQMAKKVSLSTNE*SGSKASSPYTEVDLLSSVIR 619
            SED  + +GG+PDR + WM PYLLTYCLIGRP SSEDPDL TA + SGPK   GKQ A+K S ST++ SGS+ S  YTEV L SS IR
Sbjct:   84 SEDIEEVDGGYPDRSNKWMHPYLLTYCLIGRPSSSEDPDLRTARKTSGPKGRAGKQKAQKESPSTSDGSGSETSGAYTEVGLSSSAIR 171          
BLAST of mRNA_H-elongata_contig1879.5133.1 vs. uniprot
Match: A0A6H5KXV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXV2_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 9.010e-25
Identity = 54/81 (66.67%), Postives = 62/81 (76.54%), Query Frame = 2
Query:  380 GGFPDRPDNWMDPYLLTYCLIGRPDSSEDPDLHTAWRKSGPKSHKGKQMAKKVSLSTNE*SGSKASSPYTEVDLLSSVIRI 622
            GG+PDRP+ WM PYLLT CL+GRP SSEDPDL TA + SGPK   GKQ AKK S ST++ SGS+ S  YTEVDL SS IR+
Sbjct:  117 GGYPDRPNKWMHPYLLTCCLVGRPSSSEDPDLRTARKTSGPKGRGGKQKAKKGSPSTSDGSGSETSGAYTEVDLSSSAIRM 197          
BLAST of mRNA_H-elongata_contig1879.5133.1 vs. uniprot
Match: A0A6H5KPB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPB5_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.070e-23
Identity = 58/89 (65.17%), Postives = 65/89 (73.03%), Query Frame = 2
Query:  356 SEDRNDEEGGFPDRPDNWMDPYLLTYCLIGRPDSSEDPDLHTAWRKSGPKSHKGKQMAKKVSLSTNE*SGSKASSPYTEVDLLSSVIRI 622
            SED  + +GG PDRP+ WM PYLLTYCLIGRP SSEDPDL TA + SG K   GKQ AKK S ST + SGS+ S  YTEVDL SS IR+
Sbjct:   70 SEDIEEVDGGCPDRPNKWMHPYLLTYCLIGRPSSSEDPDLRTARKTSGLKGRGGKQNAKKGSPSTIDGSGSETSGAYTEVDLSSSAIRM 158          
BLAST of mRNA_H-elongata_contig1879.5133.1 vs. uniprot
Match: A0A6H5KF57_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF57_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 4.420e-22
Identity = 57/97 (58.76%), Postives = 66/97 (68.04%), Query Frame = 2
Query:  356 SEDRNDEEGGFPDRPDNWMDPYLLTYCLIGRPDSSEDPDLHTAWRKSGPKSHKG--------KQMAKKVSLSTNE*SGSKASSPYTEVDLLSSVIRI 622
            SE+ + EEGGFP RP+ WM  YLLT+CLIGRP SSEDPDL TA + SGPK            KQ AKK S  T++ SGS+AS  YTEVDL S+ IRI
Sbjct:  162 SEEISREEGGFPQRPNKWMHQYLLTFCLIGRPCSSEDPDLRTARKTSGPKGRGASXXXXXXXKQKAKKASSGTSDESGSEASGAYTEVDLSSNAIRI 258          
BLAST of mRNA_H-elongata_contig1879.5133.1 vs. uniprot
Match: A0A6H5KBX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBX2_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.200e-20
Identity = 56/97 (57.73%), Postives = 64/97 (65.98%), Query Frame = 2
Query:  356 SEDRNDEEGGFPDRPDNWMDPYLLTYCLIGRPDSSEDPDLHTAWRKSGPKSH--------KGKQMAKKVSLSTNE*SGSKASSPYTEVDLLSSVIRI 622
            SE+   EEGGFP RP  WM  YLLT+CLIGRP SSEDPDL TA + SG K           GKQ AKK S  T++ SGS+AS  YTEVDL S+ IR+
Sbjct:  178 SEEITREEGGFPQRPKKWMHQYLLTFCLIGRPCSSEDPDLRTARKTSGAKGRGAXXXXXXXGKQKAKKGSPGTSDESGSEASGAYTEVDLSSNAIRM 274          
BLAST of mRNA_H-elongata_contig1879.5133.1 vs. uniprot
Match: A0A6H5JWI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI7_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 6.260e-20
Identity = 52/88 (59.09%), Postives = 59/88 (67.05%), Query Frame = 2
Query:  356 SEDRNDEEGGFPDRPDNWMDPYLLTYCLIGRPDSSEDPDLHTAWRKSGPKSHK--------GKQMAKKVSLSTNE*SGSKASSPYTEV 595
            SE+   EEGGFP RP+ WM  YLLT+CLIGRP SSEDPDL TA + SGPK           GKQ AKK S  T++ SGS+AS  YTEV
Sbjct:   35 SEEITQEEGGFPQRPNKWMHQYLLTFCLIGRPCSSEDPDLRTARKTSGPKGRGAYGAKGRGGKQKAKKGSPGTSDESGSEASGAYTEV 122          
BLAST of mRNA_H-elongata_contig1879.5133.1 vs. uniprot
Match: A0A6H5KE98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE98_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.590e-19
Identity = 50/93 (53.76%), Postives = 58/93 (62.37%), Query Frame = 2
Query:  374 EEGGFPDRPDNWMDPYLLTYCLIGRPDSSEDPDLHTAWRKSGPKSH--------KGKQMAKKVSLSTNE*SGSKASSPYTEVDLLSSVIRILP 628
            E GGFP RP+ WM  Y+LT+CLIGRP SSEDPDL T  + SGPK           GKQ AKK S  T++ SGS+AS  YTEVD   S    +P
Sbjct:   23 EAGGFPQRPNKWMHQYVLTFCLIGRPCSSEDPDLRTVRKTSGPKGRGAXXXXXXXGKQKAKKGSPGTSDESGSEASGAYTEVDXCGSTASSVP 115          
BLAST of mRNA_H-elongata_contig1879.5133.1 vs. uniprot
Match: A0A6H5JU95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU95_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 2.210e-19
Identity = 48/71 (67.61%), Postives = 54/71 (76.06%), Query Frame = 2
Query:  410 MDPYLLTYCLIGRPDSSEDPDLHTAWRKSGPKSHKGKQMAKKVSLSTNE*SGSKASSPYTEVDLLSSVIRI 622
            M PYLLTYCLIGRP SSEDPDL TA + SGPK   GKQ AKK S ST++ SGS+ S  YT+VDL SS IR+
Sbjct:    1 MHPYLLTYCLIGRPSSSEDPDLRTARKTSGPKGRGGKQKAKKGSPSTSDGSGSETSGAYTDVDLSSSAIRM 71          
BLAST of mRNA_H-elongata_contig1879.5133.1 vs. uniprot
Match: A0A6H5K3M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3M7_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 3.650e-17
Identity = 46/71 (64.79%), Postives = 52/71 (73.24%), Query Frame = 2
Query:  410 MDPYLLTYCLIGRPDSSEDPDLHTAWRKSGPKSHKGKQMAKKVSLSTNE*SGSKASSPYTEVDLLSSVIRI 622
            M PYLLTYCLIGRP SSEDPDL TA + SGPK   GKQ  K  S ST++ SGS+ S  YT+VDL SS IR+
Sbjct:    1 MHPYLLTYCLIGRPSSSEDPDLRTARKTSGPKGRGGKQKVKNGSPSTSDGSGSETSGAYTDVDLSSSAIRM 71          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1879.5133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7FSK1_ECTSI5.460e-2538.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWP9_9PHAE7.330e-2563.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXV2_9PHAE9.010e-2566.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPB5_9PHAE1.070e-2365.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF57_9PHAE4.420e-2258.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBX2_9PHAE1.200e-2057.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWI7_9PHAE6.260e-2059.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE98_9PHAE1.590e-1953.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU95_9PHAE2.210e-1967.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3M7_9PHAE3.650e-1764.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1879contigH-elongata_contig1879:8115..9743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_000720.1
Exons3
Model size861
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1879.5133.1prot_H-elongata_contig1879.5133.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1879 8115..9075 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930074.6007822-CDS-H-elongata_contig1879:8114..81551622930074.6007822-CDS-H-elongata_contig1879:8114..8155Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1879 8115..8155 +
1691679270.9294987-CDS-H-elongata_contig1879:8114..81551691679270.9294987-CDS-H-elongata_contig1879:8114..8155Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1879 8115..8155 +
1622930074.6193247-CDS-H-elongata_contig1879:8888..90751622930074.6193247-CDS-H-elongata_contig1879:8888..9075Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1879 8889..9075 +
1691679270.937876-CDS-H-elongata_contig1879:8888..90751691679270.937876-CDS-H-elongata_contig1879:8888..9075Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1879 8889..9075 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930074.6351845-UTR-H-elongata_contig1879:9075..91601622930074.6351845-UTR-H-elongata_contig1879:9075..9160Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1879 9076..9160 +
1691679270.94643-UTR-H-elongata_contig1879:9075..91601691679270.94643-UTR-H-elongata_contig1879:9075..9160Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1879 9076..9160 +
1622930074.6470404-UTR-H-elongata_contig1879:9195..97431622930074.6470404-UTR-H-elongata_contig1879:9195..9743Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1879 9196..9743 +
1691679270.958073-UTR-H-elongata_contig1879:9195..97431691679270.958073-UTR-H-elongata_contig1879:9195..9743Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1879 9196..9743 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1879.5133.1

>prot_H-elongata_contig1879.5133.1 ID=prot_H-elongata_contig1879.5133.1|Name=mRNA_H-elongata_contig1879.5133.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
MRHMTKVYNKVWDSYVQGKPGGILPSGSQSEDALDYVLNGVYAITAGNPI
EEEYLDDDTENDAHGEGGGGDAGRR*
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mRNA from alignment at H-elongata_contig1879:8115..9743+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1879.5133.1 ID=mRNA_H-elongata_contig1879.5133.1|Name=mRNA_H-elongata_contig1879.5133.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1629bp|location=Sequence derived from alignment at H-elongata_contig1879:8115..9743+ (Himanthalia elongata Himel1 dioecious)
ATGCGGCACATGACGAAAGTCTACAACAAAGTGTGGGACAGGTAACGTTC ATCCGCGGGTATCTCGACACACCAAGCATCACCACAGCTGTTGTGCTGCA ATTACATCTTCCGTGTTGGGTACACTATTGAGTTGCGTGGAAACGTGCCG AAACGTTTGCGGGCTCGTGTGTGCGTGTGTGTATGCTGTGATGAGCATCA ACCGCGCTGCCCGACTGGAAATGTTTTGAGGGTAGATACATTTCGAGGTG TCCACTGCCCCAATCACCATCTTCGACAATATTTTAGAACAAACGCATGT TTTCCTATCTACCTTTTACAATCAGCTGGTTAAAGTTGGCATCCACTAGG TAGAGCTCCCGCCCCCCCCCATCCTCCATGTTGCCCCCCTCCCCAGAACG TGGTCAATGCTATTGAGGTGATATAACCCCGAGGCTGAAAGTGGTTTCAA AAGTAAAGAATCCCCCCCCCACCGCGCGGCGAGAGTTCGCCCATTCTTGT ATCAAGTTACGCATGCATGTTGTCATGAACACGCGCACGACACCTTCATT TCAGTTAATTTTGTACCCTCCCCACCGGTTTGGGGTTGTTCGCACCAAAA CGTACAGCAAGTGTACTACTTCGGTCATCAGTCGCGACAAGGTTGACGAC CCACGCCCGTAGTCATTCGAAGACAAGTATACATTTACACGTGTGCACGA GCGCGATTGCTTTACGAGAAGTTCCAATCTCAGTCATCCTTGATATCTCC CCCACTTTTACACCCCTGGCCCAGTTACGTGCAAGGGAAACCTGGAGGAA TTCTACCGTCGGGGAGCCAAAGCGAAGATGCCCTCGACTACGTTTTGAAC GGAGTATACGCCATCACCGCCGGGAACCCCATCGAGGAGGAATATCTCGA CGATGATACGGAAAACGATGCGCACGGAGAAGGGGGGGGCGGGGACGCAG GACGGCGCTAAGGTATCTTCATCGGAGCAGGTCGAGGACGGCGGGAGTGA GAAGCAGCAAGGCAATGAGGGGGGAGTAGAGACGCAGAAGAGCAAAGTAG ATGACTCGCCGGGGGGGCGGGGGAAAGAAAGAGCCCGACGACCACAGCCG GGACAAGGGGGTTGACGGGCTCCTCTGAAGATCGAAATGATGAAGAGGGT GGATTTCCGGACAGACCCGACAACTGGATGGACCCGTATCTTCTCACCTA CTGCCTTATCGGGAGGCCAGACAGCAGTGAGGACCCTGACCTCCATACCG CATGGAGAAAGTCCGGCCCGAAGAGTCACAAAGGAAAACAGATGGCGAAG AAGGTATCGCTCAGCACCAACGAGTAGAGTGGATCGAAGGCGAGCAGTCC GTACACCGAGGTAGATCTCTTGTCGTCGGTGATCCGAATATTACCGGATC CGGCGAATCGGAAAGCCTAGCGGAGGTTAAGGAGACTGCGGCCGTAGCGG CCGCGAACGCGCAAACGCAGGCACGCCAGATCCACGAAACCAACACAGCT AAGCTGGTAAGGACCGTCGAAGCTTTGTCGGCGGTCGTTGTTTCGAGGCA CGCTTTAGACCAAGGAGCCACAGCCAGGGCTCGCATGGCGGACGCTCGCA AAAGGAAAAGGAAAATCGAAGCCCTCAGG
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Coding sequence (CDS) from alignment at H-elongata_contig1879:8115..9743+

>mRNA_H-elongata_contig1879.5133.1 ID=mRNA_H-elongata_contig1879.5133.1|Name=mRNA_H-elongata_contig1879.5133.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig1879:8115..9743+ (Himanthalia elongata Himel1 dioecious)
ATGCGGCACATGACGAAAGTCTACAACAAAGTGTGGGACAGATGCGGCAC
ATGACGAAAGTCTACAACAAAGTGTGGGACAGTTACGTGCAAGGGAAACC
TGGAGGAATTCTACCGTCGGGGAGCCAAAGCGAAGATGCCCTCGACTACG
TTTTGAACGGAGTATACGCCATCACCGCCGGGAACCCCATCGAGGAGGAA
TATCTCGACGATGATACGGAAAACGATGCGCACGGAGAAGGGGGGGGCGG
GGACGCAGGACGGCGCTAATTACGTGCAAGGGAAACCTGGAGGAATTCTA
CCGTCGGGGAGCCAAAGCGAAGATGCCCTCGACTACGTTTTGAACGGAGT
ATACGCCATCACCGCCGGGAACCCCATCGAGGAGGAATATCTCGACGATG
ATACGGAAAACGATGCGCACGGAGAAGGGGGGGGCGGGGACGCAGGACGG
CGCTAA
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