mRNA_H-elongata_contig187816.5131.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig187816.5131.1 vs. uniprot
Match: D7FP08_ECTSI (C-CAP/cofactor C-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP08_ECTSI) HSP 1 Score: 114 bits (285), Expect = 1.250e-28 Identity = 52/57 (91.23%), Postives = 54/57 (94.74%), Query Frame = 1
Query: 34 IRVEECERMQLVVCCRRLTVTNSLECIFPVFVATSPVLSGDNRACQFAPYNSCYPRN 204
+RVEECERMQLV CCRRLTVTNSLECIFPVFVAT PVL GDNRACQFAPYNSCYPR+
Sbjct: 159 VRVEECERMQLVTCCRRLTVTNSLECIFPVFVATPPVLCGDNRACQFAPYNSCYPRH 215
BLAST of mRNA_H-elongata_contig187816.5131.1 vs. uniprot
Match: A0A7S3XVC9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVC9_HETAK) HSP 1 Score: 69.3 bits (168), Expect = 2.030e-12 Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 1
Query: 34 IRVEECERMQLVVCCRRLTVTNSLECIFPVFVATSPVLSGDNRACQFAPYNSC-YP 198
+ V ECER+QLV CCRRL + N L+ +FP AT PVL GD+RAC+ AP N YP
Sbjct: 180 VNVVECERIQLVTCCRRLVINNCLDSVFPTLAATPPVLHGDHRACRLAPPNHAGYP 235
BLAST of mRNA_H-elongata_contig187816.5131.1 vs. uniprot
Match: A0A446YQ64_TRITD (TBCC domain-containing protein 1 n=2 Tax=Triticinae TaxID=1648030 RepID=A0A446YQ64_TRITD) HSP 1 Score: 62.0 bits (149), Expect = 1.340e-9 Identity = 26/56 (46.43%), Postives = 39/56 (69.64%), Query Frame = 1
Query: 34 IRVEECERMQLVVCCRRLTVTNSLECIFPVFVATSPVLSGDNRACQFAPYNSCYPR 201
++VE CER+Q+VV +R+ + N ECIF + V P++ GDN Q AP+N+CYP+
Sbjct: 396 VKVEHCERVQIVVASKRICIANCRECIFYLGVNHQPLIVGDNHKLQVAPFNTCYPQ 451
BLAST of mRNA_H-elongata_contig187816.5131.1 vs. uniprot
Match: A0A3B6SKG2_WHEAT (TBCC domain-containing protein 1 n=27 Tax=Pooideae TaxID=147368 RepID=A0A3B6SKG2_WHEAT) HSP 1 Score: 62.0 bits (149), Expect = 1.340e-9 Identity = 26/56 (46.43%), Postives = 39/56 (69.64%), Query Frame = 1
Query: 34 IRVEECERMQLVVCCRRLTVTNSLECIFPVFVATSPVLSGDNRACQFAPYNSCYPR 201
++VE CER+Q+VV +R+ + N ECIF + V P++ GDN Q AP+N+CYP+
Sbjct: 396 VKVEHCERVQIVVASKRICIANCRECIFYLGVNHQPLIVGDNHKLQVAPFNTCYPQ 451
BLAST of mRNA_H-elongata_contig187816.5131.1 vs. uniprot
Match: A0A1E7F318_9STRA (TBCC-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F318_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 4.720e-9 Identity = 25/54 (46.30%), Postives = 37/54 (68.52%), Query Frame = 1
Query: 34 IRVEECERMQLVVCCRRLTVTNSLECIFPVFVATSPVLSGDNRACQFAPYNSCY 195
+ V +CER ++ RR+ ++NS + + VF T P+L GDNR+CQFAPYN+ Y
Sbjct: 505 LHVVDCERTKITTAARRILISNSCDSVMNVFTPTPPLLVGDNRSCQFAPYNTYY 558
BLAST of mRNA_H-elongata_contig187816.5131.1 vs. uniprot
Match: A0A7S3BWF8_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BWF8_9VIRI) HSP 1 Score: 60.1 bits (144), Expect = 6.270e-9 Identity = 28/54 (51.85%), Postives = 35/54 (64.81%), Query Frame = 1
Query: 37 RVEECERMQLVVCCRRLTVTNSLECIFPVFVATSPVLSGDNRACQFAPYNSCYP 198
R+E CER QL+VCCRRL V+N +C + T PV GDNR AP+N+ YP
Sbjct: 206 RLERCERTQLLVCCRRLVVSNCHDCTLYLATNTPPVFVGDNRNVVVAPFNTYYP 259
BLAST of mRNA_H-elongata_contig187816.5131.1 vs. uniprot
Match: A0A2P6VFL1_9CHLO (TBCC domain-containing protein 1 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VFL1_9CHLO) HSP 1 Score: 59.7 bits (143), Expect = 8.820e-9 Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 1
Query: 28 RQIRVEECERMQLVVCCRRLTVTNSLECIFPVFVATSPVLSGDNRACQFAPYNSCYPR 201
R +RVE CER+Q++ CR +T+ +CIF + P+L GDNR Q APYNS Y R
Sbjct: 422 RTLRVERCERVQVICACRSVTINTCHDCIFYLGTNQPPLLLGDNRFLQLAPYNSGYER 479
BLAST of mRNA_H-elongata_contig187816.5131.1 vs. uniprot
Match: A0A448ZKV8_9STRA (TBCC domain-containing protein 1 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZKV8_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 8.820e-9 Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 1
Query: 34 IRVEECERMQLVVCCRRLTVTNSLECIFPVFVATSPVLSGDNRACQFAPYNSCY 195
+ V +CER ++ RR+ ++NS + I VF T P+L GDNR+CQFAPYN+ Y
Sbjct: 521 VHVVDCERTKVTTASRRILLSNSCDTIMNVFTPTPPLLVGDNRSCQFAPYNTYY 574
BLAST of mRNA_H-elongata_contig187816.5131.1 vs. uniprot
Match: UPI001CC6D283 (TBCC domain-containing protein 1-like n=4 Tax=Proteaceae TaxID=4328 RepID=UPI001CC6D283) HSP 1 Score: 58.9 bits (141), Expect = 1.630e-8 Identity = 25/56 (44.64%), Postives = 38/56 (67.86%), Query Frame = 1
Query: 34 IRVEECERMQLVVCCRRLTVTNSLECIFPVFVATSPVLSGDNRACQFAPYNSCYPR 201
+RVE CER+Q++V +R+ + N EC+F + V P++ GDN Q APYN+ YP+
Sbjct: 374 VRVEHCERVQVIVAAKRIYIANCRECVFFLGVNQRPLILGDNHKLQVAPYNTFYPQ 429
BLAST of mRNA_H-elongata_contig187816.5131.1 vs. uniprot
Match: UPI0009E2D65D (TBCC domain-containing protein 1 isoform X1 n=3 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E2D65D) HSP 1 Score: 58.9 bits (141), Expect = 1.630e-8 Identity = 24/56 (42.86%), Postives = 38/56 (67.86%), Query Frame = 1
Query: 34 IRVEECERMQLVVCCRRLTVTNSLECIFPVFVATSPVLSGDNRACQFAPYNSCYPR 201
+RVE CER+Q++ +R+ + N EC+F + + SP++ GDN Q APYN+ YP+
Sbjct: 389 LRVEHCERVQIIAAAKRICIVNCRECVFYLGINHSPLVLGDNHKLQVAPYNTFYPQ 444 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig187816.5131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig187816.5131.1 >prot_H-elongata_contig187816.5131.1 ID=prot_H-elongata_contig187816.5131.1|Name=mRNA_H-elongata_contig187816.5131.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp MSLPSLPARRQIRVEECERMQLVVCCRRLTVTNSLECIFPVFVATSPVLSback to top mRNA from alignment at H-elongata_contig187816:69..272- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig187816.5131.1 ID=mRNA_H-elongata_contig187816.5131.1|Name=mRNA_H-elongata_contig187816.5131.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at H-elongata_contig187816:69..272- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig187816:69..272- >mRNA_H-elongata_contig187816.5131.1 ID=mRNA_H-elongata_contig187816.5131.1|Name=mRNA_H-elongata_contig187816.5131.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig187816:69..272- (Himanthalia elongata Himel1 dioecious)back to top |