mRNA_H-elongata_contig187816.5131.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig187816.5131.1
Unique NamemRNA_H-elongata_contig187816.5131.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig187816.5131.1 vs. uniprot
Match: D7FP08_ECTSI (C-CAP/cofactor C-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP08_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 1.250e-28
Identity = 52/57 (91.23%), Postives = 54/57 (94.74%), Query Frame = 1
Query:   34 IRVEECERMQLVVCCRRLTVTNSLECIFPVFVATSPVLSGDNRACQFAPYNSCYPRN 204
            +RVEECERMQLV CCRRLTVTNSLECIFPVFVAT PVL GDNRACQFAPYNSCYPR+
Sbjct:  159 VRVEECERMQLVTCCRRLTVTNSLECIFPVFVATPPVLCGDNRACQFAPYNSCYPRH 215          
BLAST of mRNA_H-elongata_contig187816.5131.1 vs. uniprot
Match: A0A7S3XVC9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVC9_HETAK)

HSP 1 Score: 69.3 bits (168), Expect = 2.030e-12
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 1
Query:   34 IRVEECERMQLVVCCRRLTVTNSLECIFPVFVATSPVLSGDNRACQFAPYNSC-YP 198
            + V ECER+QLV CCRRL + N L+ +FP   AT PVL GD+RAC+ AP N   YP
Sbjct:  180 VNVVECERIQLVTCCRRLVINNCLDSVFPTLAATPPVLHGDHRACRLAPPNHAGYP 235          
BLAST of mRNA_H-elongata_contig187816.5131.1 vs. uniprot
Match: A0A446YQ64_TRITD (TBCC domain-containing protein 1 n=2 Tax=Triticinae TaxID=1648030 RepID=A0A446YQ64_TRITD)

HSP 1 Score: 62.0 bits (149), Expect = 1.340e-9
Identity = 26/56 (46.43%), Postives = 39/56 (69.64%), Query Frame = 1
Query:   34 IRVEECERMQLVVCCRRLTVTNSLECIFPVFVATSPVLSGDNRACQFAPYNSCYPR 201
            ++VE CER+Q+VV  +R+ + N  ECIF + V   P++ GDN   Q AP+N+CYP+
Sbjct:  396 VKVEHCERVQIVVASKRICIANCRECIFYLGVNHQPLIVGDNHKLQVAPFNTCYPQ 451          
BLAST of mRNA_H-elongata_contig187816.5131.1 vs. uniprot
Match: A0A3B6SKG2_WHEAT (TBCC domain-containing protein 1 n=27 Tax=Pooideae TaxID=147368 RepID=A0A3B6SKG2_WHEAT)

HSP 1 Score: 62.0 bits (149), Expect = 1.340e-9
Identity = 26/56 (46.43%), Postives = 39/56 (69.64%), Query Frame = 1
Query:   34 IRVEECERMQLVVCCRRLTVTNSLECIFPVFVATSPVLSGDNRACQFAPYNSCYPR 201
            ++VE CER+Q+VV  +R+ + N  ECIF + V   P++ GDN   Q AP+N+CYP+
Sbjct:  396 VKVEHCERVQIVVASKRICIANCRECIFYLGVNHQPLIVGDNHKLQVAPFNTCYPQ 451          
BLAST of mRNA_H-elongata_contig187816.5131.1 vs. uniprot
Match: A0A1E7F318_9STRA (TBCC-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F318_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 4.720e-9
Identity = 25/54 (46.30%), Postives = 37/54 (68.52%), Query Frame = 1
Query:   34 IRVEECERMQLVVCCRRLTVTNSLECIFPVFVATSPVLSGDNRACQFAPYNSCY 195
            + V +CER ++    RR+ ++NS + +  VF  T P+L GDNR+CQFAPYN+ Y
Sbjct:  505 LHVVDCERTKITTAARRILISNSCDSVMNVFTPTPPLLVGDNRSCQFAPYNTYY 558          
BLAST of mRNA_H-elongata_contig187816.5131.1 vs. uniprot
Match: A0A7S3BWF8_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BWF8_9VIRI)

HSP 1 Score: 60.1 bits (144), Expect = 6.270e-9
Identity = 28/54 (51.85%), Postives = 35/54 (64.81%), Query Frame = 1
Query:   37 RVEECERMQLVVCCRRLTVTNSLECIFPVFVATSPVLSGDNRACQFAPYNSCYP 198
            R+E CER QL+VCCRRL V+N  +C   +   T PV  GDNR    AP+N+ YP
Sbjct:  206 RLERCERTQLLVCCRRLVVSNCHDCTLYLATNTPPVFVGDNRNVVVAPFNTYYP 259          
BLAST of mRNA_H-elongata_contig187816.5131.1 vs. uniprot
Match: A0A2P6VFL1_9CHLO (TBCC domain-containing protein 1 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VFL1_9CHLO)

HSP 1 Score: 59.7 bits (143), Expect = 8.820e-9
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 1
Query:   28 RQIRVEECERMQLVVCCRRLTVTNSLECIFPVFVATSPVLSGDNRACQFAPYNSCYPR 201
            R +RVE CER+Q++  CR +T+    +CIF +     P+L GDNR  Q APYNS Y R
Sbjct:  422 RTLRVERCERVQVICACRSVTINTCHDCIFYLGTNQPPLLLGDNRFLQLAPYNSGYER 479          
BLAST of mRNA_H-elongata_contig187816.5131.1 vs. uniprot
Match: A0A448ZKV8_9STRA (TBCC domain-containing protein 1 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZKV8_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 8.820e-9
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 1
Query:   34 IRVEECERMQLVVCCRRLTVTNSLECIFPVFVATSPVLSGDNRACQFAPYNSCY 195
            + V +CER ++    RR+ ++NS + I  VF  T P+L GDNR+CQFAPYN+ Y
Sbjct:  521 VHVVDCERTKVTTASRRILLSNSCDTIMNVFTPTPPLLVGDNRSCQFAPYNTYY 574          
BLAST of mRNA_H-elongata_contig187816.5131.1 vs. uniprot
Match: UPI001CC6D283 (TBCC domain-containing protein 1-like n=4 Tax=Proteaceae TaxID=4328 RepID=UPI001CC6D283)

HSP 1 Score: 58.9 bits (141), Expect = 1.630e-8
Identity = 25/56 (44.64%), Postives = 38/56 (67.86%), Query Frame = 1
Query:   34 IRVEECERMQLVVCCRRLTVTNSLECIFPVFVATSPVLSGDNRACQFAPYNSCYPR 201
            +RVE CER+Q++V  +R+ + N  EC+F + V   P++ GDN   Q APYN+ YP+
Sbjct:  374 VRVEHCERVQVIVAAKRIYIANCRECVFFLGVNQRPLILGDNHKLQVAPYNTFYPQ 429          
BLAST of mRNA_H-elongata_contig187816.5131.1 vs. uniprot
Match: UPI0009E2D65D (TBCC domain-containing protein 1 isoform X1 n=3 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E2D65D)

HSP 1 Score: 58.9 bits (141), Expect = 1.630e-8
Identity = 24/56 (42.86%), Postives = 38/56 (67.86%), Query Frame = 1
Query:   34 IRVEECERMQLVVCCRRLTVTNSLECIFPVFVATSPVLSGDNRACQFAPYNSCYPR 201
            +RVE CER+Q++   +R+ + N  EC+F + +  SP++ GDN   Q APYN+ YP+
Sbjct:  389 LRVEHCERVQIIAAAKRICIVNCRECVFYLGINHSPLVLGDNHKLQVAPYNTFYPQ 444          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig187816.5131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP08_ECTSI1.250e-2891.23C-CAP/cofactor C-like domain-containing protein n=... [more]
A0A7S3XVC9_HETAK2.030e-1257.14Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A446YQ64_TRITD1.340e-946.43TBCC domain-containing protein 1 n=2 Tax=Triticina... [more]
A0A3B6SKG2_WHEAT1.340e-946.43TBCC domain-containing protein 1 n=27 Tax=Pooideae... [more]
A0A1E7F318_9STRA4.720e-946.30TBCC-domain-containing protein n=1 Tax=Fragilariop... [more]
A0A7S3BWF8_9VIRI6.270e-951.85Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
A0A2P6VFL1_9CHLO8.820e-948.28TBCC domain-containing protein 1 n=1 Tax=Micractin... [more]
A0A448ZKV8_9STRA8.820e-948.15TBCC domain-containing protein 1 n=1 Tax=Pseudo-ni... [more]
UPI001CC6D2831.630e-844.64TBCC domain-containing protein 1-like n=4 Tax=Prot... [more]
UPI0009E2D65D1.630e-842.86TBCC domain-containing protein 1 isoform X1 n=3 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig187816contigH-elongata_contig187816:69..272 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.2
Seed ortholog evalue1.2e-23
Seed eggNOG ortholog2880.D7FP08
Preferred nameTBCCD1
KEGG koko:K16810
GOsGO:0000922,GO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0008150,GO:0008360,GO:0009987,GO:0015630,GO:0022603,GO:0022604,GO:0030334,GO:0031616,GO:0032879,GO:0040012,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051179,GO:0051235,GO:0051270,GO:0051640,GO:0051641,GO:0051642,GO:0051645,GO:0051651,GO:0051657,GO:0051661,GO:0051684,GO:0061842,GO:0065007,GO:0065008,GO:2000145
EggNOG free text desc.maintenance of Golgi location
EggNOG OGsKOG4416@1,KOG4416@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930074.428997-CDS-H-elongata_contig187816:68..2721622930074.428997-CDS-H-elongata_contig187816:68..272Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187816 69..272 -
1691679270.9017038-CDS-H-elongata_contig187816:68..2721691679270.9017038-CDS-H-elongata_contig187816:68..272Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187816 69..272 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig187816.5131.1prot_H-elongata_contig187816.5131.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig187816 69..272 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig187816.5131.1

>prot_H-elongata_contig187816.5131.1 ID=prot_H-elongata_contig187816.5131.1|Name=mRNA_H-elongata_contig187816.5131.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
MSLPSLPARRQIRVEECERMQLVVCCRRLTVTNSLECIFPVFVATSPVLS
GDNRACQFAPYNSCYPRN
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mRNA from alignment at H-elongata_contig187816:69..272-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig187816.5131.1 ID=mRNA_H-elongata_contig187816.5131.1|Name=mRNA_H-elongata_contig187816.5131.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at H-elongata_contig187816:69..272- (Himanthalia elongata Himel1 dioecious)
ATGTCTCTCCCGTCCCTTCCCGCGCGTCGGCAGATACGAGTCGAGGAGTG CGAGCGGATGCAGCTGGTTGTCTGCTGCCGGCGGCTCACGGTGACAAACT CCTTGGAGTGTATTTTCCCGGTGTTCGTGGCGACGTCTCCCGTCCTCAGC GGGGACAACCGCGCCTGCCAGTTCGCGCCCTACAATTCCTGCTACCCGAG GAAC
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Coding sequence (CDS) from alignment at H-elongata_contig187816:69..272-

>mRNA_H-elongata_contig187816.5131.1 ID=mRNA_H-elongata_contig187816.5131.1|Name=mRNA_H-elongata_contig187816.5131.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig187816:69..272- (Himanthalia elongata Himel1 dioecious)
ATGTCTCTCCCGTCCCTTCCCGCGCGTCGGCAGATACGAGTCGAGGAGTG
CGAGCGGATGCAGCTGGTTGTCTGCTGCCGGCGGCTCACGGTGACAAACT
CCTTGGAGTGTATTTTCCCGGTGTTCGTGGCGACGTCTCCCGTCCTCAGC
GGGGACAACCGCGCCTGCCAGTTCGCGCCCTACAATTCCTGCTACCCGAG
GAACATGTCTCTCCCGTCCCTTCCCGCGCGTCGGCAGATACGAGTCGAGG
AGTGCGAGCGGATGCAGCTGGTTGTCTGCTGCCGGCGGCTCACGGTGACA
AACTCCTTGGAGTGTATTTTCCCGGTGTTCGTGGCGACGTCTCCCGTCCT
CAGCGGGGACAACCGCGCCTGCCAGTTCGCGCCCTACAATTCCTGCTACC
CGAGGAAC
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