mRNA_H-elongata_contig106276.513.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106276.513.1
Unique NamemRNA_H-elongata_contig106276.513.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig106276.513.1 vs. uniprot
Match: Q2TUH1_9PHAE (Ribosomal protein S8 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUH1_9PHAE)

HSP 1 Score: 236 bits (601), Expect = 1.750e-78
Identity = 117/123 (95.12%), Postives = 120/123 (97.56%), Query Frame = 1
Query:    1 MLAKIINRLRNGYMVYHLGVSFQEVSFSTKVLDLLWKENLIRGYTKTKDGFITVLLRYYEGSPICSRLIVISRPRDRLYLSSLDLSRVSDNFGVLVLSTPKGIMTAEDAVRKGEGGEILAYVA 369
            MLAKIINRLRNGYMVYHLGVSFQEVSFSTKVLDLLWKENLIRGYTKT DG ITVLLRYYEGSPICSRLIVISRPRDRLYLSSLDLSRVS++FGVLVLSTPKGIMTAEDA+RKGEGGEILAY A
Sbjct:    1 MLAKIINRLRNGYMVYHLGVSFQEVSFSTKVLDLLWKENLIRGYTKTDDGIITVLLRYYEGSPICSRLIVISRPRDRLYLSSLDLSRVSNDFGVLVLSTPKGIMTAEDAIRKGEGGEILAYAA 123          
BLAST of mRNA_H-elongata_contig106276.513.1 vs. uniprot
Match: A0A8F0K0B3_AKKLU (Ribosomal protein S8 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0K0B3_AKKLU)

HSP 1 Score: 219 bits (557), Expect = 8.970e-72
Identity = 105/123 (85.37%), Postives = 115/123 (93.50%), Query Frame = 1
Query:    1 MLAKIINRLRNGYMVYHLGVSFQEVSFSTKVLDLLWKENLIRGYTKTKDGFITVLLRYYEGSPICSRLIVISRPRDRLYLSSLDLSRVSDNFGVLVLSTPKGIMTAEDAVRKGEGGEILAYVA 369
            MLAKIINRLRNGYMVYHLGVSF+EV F TKVLDLLW ENLIRGYTKTK+G ITVLLRY+EGSPIC+RL+V+SRPRDRLYLS LDLSRVSD FGVL+LST KG+MTAE+A+RKGEGGEILAY A
Sbjct:    1 MLAKIINRLRNGYMVYHLGVSFKEVRFCTKVLDLLWSENLIRGYTKTKEGIITVLLRYHEGSPICTRLVVLSRPRDRLYLSLLDLSRVSDGFGVLILSTTKGVMTAEEAIRKGEGGEILAYAA 123          
BLAST of mRNA_H-elongata_contig106276.513.1 vs. uniprot
Match: S4S3T6_LAMHY (Ribosomal protein S8 n=41 Tax=Laminariales TaxID=2886 RepID=S4S3T6_LAMHY)

HSP 1 Score: 210 bits (534), Expect = 2.880e-68
Identity = 98/123 (79.67%), Postives = 114/123 (92.68%), Query Frame = 1
Query:    1 MLAKIINRLRNGYMVYHLGVSFQEVSFSTKVLDLLWKENLIRGYTKTKDGFITVLLRYYEGSPICSRLIVISRPRDRLYLSSLDLSRVSDNFGVLVLSTPKGIMTAEDAVRKGEGGEILAYVA 369
            MLAKIINRLRNGYMVYH GVSF+EV F TKVLD+LWKENLI+GYTKT +G ITVLLRY++GSPIC+RL+VISRPRDR+YLS LDL+R+S++FGVL+LSTPKGI+T ED VRKGEGGE+LAY A
Sbjct:    1 MLAKIINRLRNGYMVYHFGVSFKEVRFCTKVLDILWKENLIKGYTKTNEGVITVLLRYHDGSPICTRLVVISRPRDRIYLSLLDLARLSNDFGVLILSTPKGILTNEDCVRKGEGGEVLAYAA 123          
BLAST of mRNA_H-elongata_contig106276.513.1 vs. uniprot
Match: A0A8F0FCP5_9PHAE (Ribosomal protein S8 n=2 Tax=Ecklonia TaxID=105406 RepID=A0A8F0FCP5_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 4.780e-67
Identity = 97/122 (79.51%), Postives = 110/122 (90.16%), Query Frame = 1
Query:    1 MLAKIINRLRNGYMVYHLGVSFQEVSFSTKVLDLLWKENLIRGYTKTKDGFITVLLRYYEGSPICSRLIVISRPRDRLYLSSLDLSRVSDNFGVLVLSTPKGIMTAEDAVRKGEGGEILAYV 366
            MLAKIINRLRNGYMVY  GVSF+EV F T VLD+LWKENLI+GYTKT +GFITVLLRYY GSP+C+RL+VISRPRDR+YLS LD+SRVS+NFGVL+LST KGIMT E  +RKGEGGE+LAYV
Sbjct:    1 MLAKIINRLRNGYMVYQFGVSFKEVRFCTNVLDILWKENLIKGYTKTNEGFITVLLRYYNGSPVCTRLVVISRPRDRIYLSLLDISRVSNNFGVLILSTTKGIMTNEHCIRKGEGGEVLAYV 122          
BLAST of mRNA_H-elongata_contig106276.513.1 vs. uniprot
Match: A0A8F0JZR1_9PHAE (Ribosomal protein S8 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZR1_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 1.950e-66
Identity = 98/122 (80.33%), Postives = 112/122 (91.80%), Query Frame = 1
Query:    1 MLAKIINRLRNGYMVYHLGVSFQEVSFSTKVLDLLWKENLIRGYTKTKDGFITVLLRYYEGSPICSRLIVISRPRDRLYLSSLDLSRVSDNFGVLVLSTPKGIMTAEDAVRKGEGGEILAYV 366
            MLAKIINRLRNGY+VYHLGVSF++V F TKVLD+LWKE LI+GYTKT +G ITV LRY EG PIC+RL+V+SRPRDRLYLS LDLSRVS +FGVL+LSTPKGIMT+++AVRKGEGGEILAYV
Sbjct:    1 MLAKIINRLRNGYLVYHLGVSFKDVRFCTKVLDILWKERLIKGYTKTNEGVITVFLRYDEGLPICTRLVVLSRPRDRLYLSLLDLSRVSKDFGVLILSTPKGIMTSQEAVRKGEGGEILAYV 122          
BLAST of mRNA_H-elongata_contig106276.513.1 vs. uniprot
Match: A0A4D6E4Q2_9PHAE (Ribosomal protein S8 n=1 Tax=Nereocystis luetkeana TaxID=117523 RepID=A0A4D6E4Q2_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 7.930e-66
Identity = 95/123 (77.24%), Postives = 111/123 (90.24%), Query Frame = 1
Query:    1 MLAKIINRLRNGYMVYHLGVSFQEVSFSTKVLDLLWKENLIRGYTKTKDGFITVLLRYYEGSPICSRLIVISRPRDRLYLSSLDLSRVSDNFGVLVLSTPKGIMTAEDAVRKGEGGEILAYVA 369
            MLAKIINRLRNGYMVYHLGVSF+EV F  KVLD+LWKENLIRGY KT +G ITV LRY++GSPIC+RLIVISRPRDR+Y+S+LD+SR+S++FGVL+LST KGIMT E  +RKGEGGE+LAY A
Sbjct:    1 MLAKIINRLRNGYMVYHLGVSFKEVRFCAKVLDILWKENLIRGYKKTNEGIITVFLRYHDGSPICTRLIVISRPRDRIYISALDISRLSNDFGVLILSTTKGIMTHEQCIRKGEGGEVLAYAA 123          
BLAST of mRNA_H-elongata_contig106276.513.1 vs. uniprot
Match: A0A8F0FDK5_9PHAE (Ribosomal protein S8 n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0FDK5_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 4.590e-65
Identity = 94/123 (76.42%), Postives = 112/123 (91.06%), Query Frame = 1
Query:    1 MLAKIINRLRNGYMVYHLGVSFQEVSFSTKVLDLLWKENLIRGYTKTKDGFITVLLRYYEGSPICSRLIVISRPRDRLYLSSLDLSRVSDNFGVLVLSTPKGIMTAEDAVRKGEGGEILAYVA 369
            MLAKIIN+LRNGYMVYHLGVSF++V F TKVLD+LW+ENLIRGY K  DG + VLLRYYEGSPIC+RL+V+SRPRDRLYLSS+DL RVS +FGVL++STP+G++TA+ AVRKG+GGEILAY A
Sbjct:    1 MLAKIINKLRNGYMVYHLGVSFRDVRFGTKVLDILWEENLIRGYIKATDGTVKVLLRYYEGSPICTRLVVLSRPRDRLYLSSVDLFRVSHDFGVLIVSTPQGLLTAKQAVRKGKGGEILAYAA 123          
BLAST of mRNA_H-elongata_contig106276.513.1 vs. uniprot
Match: A0A3G5FPM5_9PHAE (Ribosomal protein S8 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPM5_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 6.520e-65
Identity = 93/123 (75.61%), Postives = 111/123 (90.24%), Query Frame = 1
Query:    1 MLAKIINRLRNGYMVYHLGVSFQEVSFSTKVLDLLWKENLIRGYTKTKDGFITVLLRYYEGSPICSRLIVISRPRDRLYLSSLDLSRVSDNFGVLVLSTPKGIMTAEDAVRKGEGGEILAYVA 369
            MLAK+INRLRN YMVYHL VSF+EV F TK+LD+LWKENLIRGYT+T  G ITV LRY++GSP+C+RL ++SRPRDRLYLS LDLSRV D+FG+L+LSTPKGIMTA++A+ KGEGGEILAYV+
Sbjct:    1 MLAKLINRLRNAYMVYHLSVSFREVRFCTKILDILWKENLIRGYTRTNQGLITVFLRYHDGSPMCTRLTILSRPRDRLYLSLLDLSRVLDDFGILILSTPKGIMTAKEALSKGEGGEILAYVS 123          
BLAST of mRNA_H-elongata_contig106276.513.1 vs. uniprot
Match: V9PB06_UNDPI (Ribosomal protein S8 n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=V9PB06_UNDPI)

HSP 1 Score: 201 bits (511), Expect = 9.260e-65
Identity = 93/123 (75.61%), Postives = 110/123 (89.43%), Query Frame = 1
Query:    1 MLAKIINRLRNGYMVYHLGVSFQEVSFSTKVLDLLWKENLIRGYTKTKDGFITVLLRYYEGSPICSRLIVISRPRDRLYLSSLDLSRVSDNFGVLVLSTPKGIMTAEDAVRKGEGGEILAYVA 369
            ML+KIINRLRNGYMVYH GVSF+EV FSTKVLD+LWKENLI+GY KT DG ITV LRY++G PIC+RL+VISRPRDR+YLS LDL+R+S++FG+L+LST KGIMT E  VRKGEGGE+LAY +
Sbjct:    1 MLSKIINRLRNGYMVYHFGVSFKEVRFSTKVLDILWKENLIKGYVKTNDGIITVFLRYHDGFPICTRLVVISRPRDRIYLSLLDLARLSNDFGILILSTTKGIMTNEQCVRKGEGGEVLAYAS 123          
BLAST of mRNA_H-elongata_contig106276.513.1 vs. uniprot
Match: A0A516ICG1_9PHAE (Ribosomal protein S8 n=3 Tax=Lessonia TaxID=105411 RepID=A0A516ICG1_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 1.870e-64
Identity = 94/123 (76.42%), Postives = 109/123 (88.62%), Query Frame = 1
Query:    1 MLAKIINRLRNGYMVYHLGVSFQEVSFSTKVLDLLWKENLIRGYTKTKDGFITVLLRYYEGSPICSRLIVISRPRDRLYLSSLDLSRVSDNFGVLVLSTPKGIMTAEDAVRKGEGGEILAYVA 369
            ML+KIINRLRNGYMVYH GVSF+EV F  KVLD+LWKENLI+GYTKTKDG ITV LRYY G PIC+RL+VISRPRDR+Y+S LDL+R+S+ FGVL+LST +GIMT +  +RKGEGGEILAYVA
Sbjct:    1 MLSKIINRLRNGYMVYHFGVSFKEVRFCIKVLDILWKENLIKGYTKTKDGVITVFLRYYNGFPICTRLVVISRPRDRIYISLLDLARLSNEFGVLILSTSQGIMTNKQCIRKGEGGEILAYVA 123          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106276.513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q2TUH1_9PHAE1.750e-7895.12Ribosomal protein S8 n=2 Tax=Desmarestia TaxID=313... [more]
A0A8F0K0B3_AKKLU8.970e-7285.37Ribosomal protein S8 n=2 Tax=Laminariales TaxID=28... [more]
S4S3T6_LAMHY2.880e-6879.67Ribosomal protein S8 n=41 Tax=Laminariales TaxID=2... [more]
A0A8F0FCP5_9PHAE4.780e-6779.51Ribosomal protein S8 n=2 Tax=Ecklonia TaxID=105406... [more]
A0A8F0JZR1_9PHAE1.950e-6680.33Ribosomal protein S8 n=1 Tax=Chorda asiatica TaxID... [more]
A0A4D6E4Q2_9PHAE7.930e-6677.24Ribosomal protein S8 n=1 Tax=Nereocystis luetkeana... [more]
A0A8F0FDK5_9PHAE4.590e-6576.42Ribosomal protein S8 n=1 Tax=Analipus japonicus Ta... [more]
A0A3G5FPM5_9PHAE6.520e-6575.61Ribosomal protein S8 n=1 Tax=Cladosiphon okamuranu... [more]
V9PB06_UNDPI9.260e-6575.61Ribosomal protein S8 n=1 Tax=Undaria pinnatifida T... [more]
A0A516ICG1_9PHAE1.870e-6476.42Ribosomal protein S8 n=3 Tax=Lessonia TaxID=105411... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106276contigH-elongata_contig106276:191..562 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.9
Seed ortholog evalue9.1e-41
Seed eggNOG ortholog2880.D7FV76
EggNOG free text desc.Ribosomal protein S8
EggNOG OGs2E4Z8@1,2SBTY@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size372
Cds size372
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929594.0927665-CDS-H-elongata_contig106276:190..5621622929594.0927665-CDS-H-elongata_contig106276:190..562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106276 191..562 -
1691679083.5426555-CDS-H-elongata_contig106276:190..5621691679083.5426555-CDS-H-elongata_contig106276:190..562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106276 191..562 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106276.513.1prot_H-elongata_contig106276.513.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106276 191..562 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106276.513.1

>prot_H-elongata_contig106276.513.1 ID=prot_H-elongata_contig106276.513.1|Name=mRNA_H-elongata_contig106276.513.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
MLAKIINRLRNGYMVYHLGVSFQEVSFSTKVLDLLWKENLIRGYTKTKDG
FITVLLRYYEGSPICSRLIVISRPRDRLYLSSLDLSRVSDNFGVLVLSTP
KGIMTAEDAVRKGEGGEILAYVA*
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mRNA from alignment at H-elongata_contig106276:191..562-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106276.513.1 ID=mRNA_H-elongata_contig106276.513.1|Name=mRNA_H-elongata_contig106276.513.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=372bp|location=Sequence derived from alignment at H-elongata_contig106276:191..562- (Himanthalia elongata Himel1 dioecious)
ATGCTTGCAAAAATAATTAATAGATTACGTAACGGGTATATGGTTTATCA TCTTGGGGTATCTTTTCAGGAGGTTAGTTTTTCCACAAAAGTTTTAGATC TTTTGTGGAAAGAGAATTTAATTCGAGGGTATACCAAAACGAAAGATGGT TTTATAACAGTTCTTCTTAGATATTATGAAGGCTCTCCGATTTGCAGTCG TTTGATTGTTATTTCTAGACCACGTGATCGGCTTTATCTATCGTCATTAG ATCTTTCTCGTGTTTCTGATAATTTTGGTGTTTTAGTATTATCTACACCT AAGGGTATCATGACCGCTGAAGATGCCGTACGAAAGGGTGAAGGGGGGGA AATCTTAGCATACGTTGCATGA
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Coding sequence (CDS) from alignment at H-elongata_contig106276:191..562-

>mRNA_H-elongata_contig106276.513.1 ID=mRNA_H-elongata_contig106276.513.1|Name=mRNA_H-elongata_contig106276.513.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig106276:191..562- (Himanthalia elongata Himel1 dioecious)
ATGCTTGCAAAAATAATTAATAGATTACGTAACGGGTATATGGTTTATCA
TCTTGGGGTATCTTTTCAGGAGGTTAGTTTTTCCACAAAAGTTTTAGATC
TTTTGTGGAAAGAGAATTTAATTCGAGGGTATACCAAAACGAAAGATGGT
TTTATAACAGTTCTTCTTAGATATTATGAAGGCTCTCCGATTTGCAGTCG
TTTGATTGTTATTTCTAGACCACGTGATCGGCTTTATCTATCGTCATTAG
ATCTTTCTCGTGTTTCTGATAATTTTGGTGTTTTAGTATTATCTACACCT
AAGGGTATCATGACCGCTGAAGATGCCGTACGAAAGGGTGAAGGGGGGGA
AATCTTAGCATACGTTGCATGAATGCTTGCAAAAATAATTAATAGATTAC
GTAACGGGTATATGGTTTATCATCTTGGGGTATCTTTTCAGGAGGTTAGT
TTTTCCACAAAAGTTTTAGATCTTTTGTGGAAAGAGAATTTAATTCGAGG
GTATACCAAAACGAAAGATGGTTTTATAACAGTTCTTCTTAGATATTATG
AAGGCTCTCCGATTTGCAGTCGTTTGATTGTTATTTCTAGACCACGTGAT
CGGCTTTATCTATCGTCATTAGATCTTTCTCGTGTTTCTGATAATTTTGG
TGTTTTAGTATTATCTACACCTAAGGGTATCATGACCGCTGAAGATGCCG
TACGAAAGGGTGAAGGGGGGGAAATCTTAGCATACGTTGCATGA
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