mRNA_H-elongata_contig1878.5130.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1878.5130.1 vs. uniprot
Match: D7FLM2_ECTSI (Tetratricopeptide repeat domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLM2_ECTSI) HSP 1 Score: 1137 bits (2941), Expect = 0.000e+0 Identity = 764/1641 (46.56%), Postives = 944/1641 (57.53%), Query Frame = 1
Query: 1 QVVSNDTRDHAEVLLLLARATVEQSGDGGSGDDEARDARKSHGKALETGIKHLRVAVETCPRNQLSLRQELHWHLGRLALSHLQLKLRAGAGSNSQA----------------HTLLLRLARDAGDNLGDAIRLAQAASEVNSVSAIQLAENGTSAISTARQGAATTIDEMRTRIGWTRAELAKLCLTEVAPEHGTVSAIENLNIVRKIHTVESAPVEFITATCLLAEAYRLKGETDKSIETYREAARASALLVNQLHFIDASLNLGAELSASEYDRLASKVRPAKHHRHGKGGGVLTLP-LSPALRGLFGEGIECCLARCRDAAAAASSVRK--GSIPSEASFHTSTSSRGGNAASE--SRSYGTGKQKRKVVWVWIPDLDGTPDCPNKKWTTGMEVTSLIAQTHGVANDRLEGGAKGEIVDVGGCIDVSEYTTEHL-QWKPRQLGGLLSKMRVNTANCTTKHEIAERSVHHPSGLAATATAATASGDFFISPLGEGKSKKKQEKPAGHERVGSESTGYHPNENAKTAAKKNNFASKIDTDQSYQGDNHFGMKLGDYLSAPIGEDSTGTERDQ------------------VSPRVGENVGRVDSSLLESGKSTRR--------GTVSGARGNPTIVRLAPAHIAPPSRPAPQWVLDMQQTAVLVSGAAPSHKVIINRPVPFLG--STAASHAPDSSPSRRSRPRRGSGDDVDDGGGAES--GILRAQPHTLQAFRFLCRSGQLFLAEQLALAGVWDVGASGG--------AGRSRVDDEEISQGGGGSGEVRRPNVGLRTAWMATRLKPMLRLALSERRKRIQQALEDVQRLAGPDEEIFMLPRTCVETRGAATVGWDVRMVPFHHNVVRELRSFEKWLARSGVWAEQPALMLLTTCGTTVPRGLKVDVEAHG--ASDGAGSMGRERVAPSDYPTDEALAEMVDPYEALLCWFYLPPGASSSSDQWHSVMDGGAESR--------------GVGNSTDDDNGATRVACFVAYHDQGKNRENSSDFRGDNGVNESKKRSPKLAELDGKRAAIGARAHNGRRDMVKDVHDDSRPSFEGGSSVNGM----------DDKIDANDFEPGELRVRMILADPGTCQKLREATEVFLSTMRNRNIVKRNALLAFALQDLGFALGVSKILKALPPQIQELTVVHHGLLAVVPVHALPLEEASSIKDPISLGSAKGRRPYSSRTGDDVASGGSSGSDLAAPLTVLDKYSVRYTSSIYALEIAERNAVDAARDIPWYFDTCCVIEDPLREVTSDD----PGLLRHPKNGRAGSGAVRQRDDGLQSQQLKLKHSHHEGRVVAATWSSDPEDCHFCKGESATREVLSTVILESKGMSQALRAARSXXXXXXXXXXAVASGTGQIRGTLHGNMLVTSSAEEAAATSA-----------------ETARLFASKLNQVDAASLLKTLHLRSCALVVLSNGGITDGIHCVEDSESTITAGFPAPK-----DVGDAVRNHLAEKEKTPPLNLADAFIATGARTVVQKIWYDEEMALADTASVTLLCFYEELREATVAGEKRPVAVALRKAQLWIRDATATDVLSRVQGTRGLSDDDSEALVQELTSLFKVMSDTGSGTAIDRPFRGSFYWAGFQA 4587
+V+ +DTRD AE LLLLARAT+E+S + + R +S +ALETGI HLR A+ETCP+ QL LRQELHW+LGRLAL+ LQ +LR+ A + + A T L+RLAR+AG +L +AI LAQAA EV + A A +A T A D MR R GW RAEL+KLCLT VAP++ AIE+L + R+IH ++ AP E++T+TCLLA+A+ L GE ++SI+ YREAARA+ LL NQLH D LN GA + + R + + G +P LS ALRGLFG G CL RCR+ AS + G + SE SF T ++ G+ AS + + + K KR V W W+PD DGTPD P K + + A T +DR + + Y E L +WKP QL LL+ + ++ + C K +I ++ + HP G AA A AA A G+ + G+ P G E+ GS A + TD + D GM L DY+ P E+S D R+D S S + + RG +VRLAPAHIAPPSRPAP+WV+DMQ+ V +AP KV+INRP PF G S AA GI+RAQ H LQAFRFLCRSGQLFLAEQLA++GVWD G +G A + ++GGG E GLR AWMATRLKP R AL+ERR+R++QALED +R AG IF+LPR VET AA+ WD+R VP VV++LRSFEKWL R GVW+ QP L LLTTCGT PRGLK A G AS S RE VAPS+YPT+EALAEMVDPYEAL+CWFYLP G SS + GGA G G VACFVAYHD+GK R S D NG + K + + +L+ KRAAI ARA GRR +D S+ S SS +G DD++DA DFEPG LRVR++LA PGT Q+LR+ATE FL T+RNRN VKRN L AFALQDL ALGV KI KALPP IQE+T+V HGLL VVPVHALPLEE S+ + +A GR P + G G + LAAP+ VLD+Y VRYTSS+YALEIAER A A R+IPWYF+TCCV+EDPLR V+S+D P R G G G D+ ++ Q + L+HS HE RVV ATWSSDP+DCHFCK ESATR+ L T I+ S G+ + R XXXXXXXXXX T G + T++A+ TARLFASKLNQVDAAS LK LHLRSC LVVLS GG D + VED+E+ I+AG K D+ D ++ + +TPPL LA+AFIA GARTVVQK+WYDEE AL DT VTLLCFYEEL+EAT+AGEKRPV VALR+AQLW+R AT TD+LSRVQ RGLS +D+E+L+QEL+SLFKVMS+ G+G A+DRPF ++WAGFQA
Sbjct: 380 EVIPDDTRDRAEALLLLARATIEKSR-AAAANVPGRRRLQSPSEALETGIGHLRAALETCPQKQLGLRQELHWNLGRLALARLQGRLRSAADAITSASPFGTANGASAAPSGGRTPLIRLAREAGGHLSEAISLAQAAVEVAATVAAAEARTNLAANGTGAGSGAVGDDGMRAREGWARAELSKLCLTGVAPDYYPAVAIEHLRVAREIHPLDQAPAEYVTSTCLLAKAFHLTGEPERSIQAYREAARAAPLLGNQLHHADMDLNPGAIIPGKVNTGPLASPRRQPYQTNDDGRSTTFMPSLSVALRGLFGSGTARCLDRCREEMVVASKAMRDGGGMASEPSFRTVGTAGTGSVASGLGAAARPSSKHKRVVEWTWVPDQDGTPDNPIVKPSAAE---AGRATTTSATDDRDNATVPENVNEA--------YRAEDLARWKPGQLKELLTNLGLDASGCVEKRDIVDKIMRHPGGPAAAAAAAIARGETVAAAPPSGR-------PTG-EKGGSXXXXXXXXXXXXXDVAMGKTAVVVTTDDDEEQDGFVGMTLADYMGRPTEENSNDHYHDNRGGNGXXXXXXXXXXXXXXXXXAARGGNRMDPHAAASSVSGXXXXXXXXDVSSAASGRGG-KVVRLAPAHIAPPSRPAPEWVVDMQRDKV----SAPQRKVVINRPFPFSGVISPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIVRAQAHALQAFRFLCRSGQLFLAEQLAISGVWDAGKTGSTDEKDLIAASPRGLASTSANRGGGARSE------GLRAAWMATRLKPAARTALAERRERVRQALEDARRFAGAQGAIFLLPRVGVETAAAASTEWDLRAVPSQGEVVKQLRSFEKWLVRGGVWSAQPLLALLTTCGTAAPRGLKAGTGADGSGASTAKPSSEREFVAPSEYPTEEALAEMVDPYEALVCWFYLPDGGSSD-------VGGGATXXXXXXXXXXXXXXRSGFGQ---------EVACFVAYHDEGKRRP-SDDHGAKNG--QGGKDAKAVTDLEAKRAAIAARAR-GRRQQGEDADGGSQYSDSSISSGDGXXXXXXXXXXSDDELDAEDFEPGALRVRVVLASPGTTQQLRKATEAFLKTLRNRNPVKRNVLSAFALQDLSIALGVPKIFKALPPHIQEVTIVQHGLLGVVPVHALPLEEKSTNEPGRPRSAAMGRPPTAGSAG----GGRXXXAGLAAPMAVLDRYCVRYTSSLYALEIAERAAAAAIREIPWYFNTCCVVEDPLRHVSSEDGSRDPKARRGSSTGADGGGD----DNPMRGQSMGLRHSRHECRVVGATWSSDPDDCHFCKEESATRQTL-TSIVSSGGVMAGGQHGRGXXXXXXXXXX-----------TTVGGAMSTATAKTMXXXXXXXXXXXXXXXXXXXXXXNTARLFASKLNQVDAASFLKQLHLRSCGLVVLSRGGFVDDMQSVEDAETMISAGQEVTKRKEGEDIADGDKDDTPRRMETPPLGLAEAFIAVGARTVVQKMWYDEETALVDT--VTLLCFYEELKEATLAGEKRPVGVALREAQLWLRGATLTDILSRVQDARGLSPEDAESLMQELSSLFKVMSERGNGAALDRPFSSPYHWAGFQA 1947
BLAST of mRNA_H-elongata_contig1878.5130.1 vs. uniprot
Match: A0A6H5JBP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBP1_9PHAE) HSP 1 Score: 501 bits (1290), Expect = 1.180e-152 Identity = 407/1077 (37.79%), Postives = 507/1077 (47.08%), Query Frame = 1
Query: 283 SQAHTLLLRLARDAGDNLGDAIRLAQAASEVNSVSAIQLAENGTSAISTARQGAATTIDEMRTRIGWTRAELAKLCLTEVAPE-----------------HGT------------------VSAIENLNIVRKIHTVESAPVEFITATCLLAEAYRLKGETDKSIETYREAARASALLVNQLHFIDASLNLGAELSASEYDRLASKVRPAKHHRHGKGGGVLTLPLSPALRGLFGEGIECCLARCRDAAAAASSVRK--GSIPSEASFHTSTSSRGGNAASE--SRSYGTGKQKRKVVWVWIPDLDGTPDCPNKKWTTGMEVTSLIAQTHGVANDRLEGGAKGEIVDVGGCIDVSEYTTEHL-QWKPRQLGGLLSKMRVNTANCTTKHEIAERSVHHPSGLAATATAATASGDFFISPLGEGKSKKKQEKPAGHERVGSESTGYHPNENAKTAAKKNNFASKIDTDQSYQGDNHFGMKLGDYLSAPIGEDSTGTERDQ---------VSPR---------VGENVGRVDS-----SLLESGKSTRRGTVSGA---RGNPTIVRLAPAHIAPPSRPAPQWVLDMQQTAVLVSGAAPSHKVIINRPVPFLGSTAASHAPDSSPSRRSRPRRGSGDDVDDGGGAES--------GILRAQPHTLQAFRFLCRSGQLFLAEQLALAGVWDVGASGGAGRSRV--------DDEEISQGGGGSGEVRRPNVGLRTAWMATRLKPMLRLALSERRKRIQQALEDVQRLAGPDEEIFMLPRTCVETRGAATVGWDVRMVPFHHNVVRELRSFEKWLARSGVWAEQPALMLLTTCGTTVPRGLKVDVEAHG--ASDGAGSMGRERVAPSDYPTDEALAEMVDPYEALLCWFYLPPGASSSSDQWHSVMDGGAESR--------------GVGNSTDDDNGATRVACFVAYHDQGKNRENSSDFRGDNGVNESKKRSPKLAELDGKRAAIGARAHNGRRDMVKDVHDDSR---PSFEGGSSVN-------GMDDKIDANDFEPGELRVRMILADPGTCQKLREATEVFLSTMRNRNIVKRNALLAF 3189
S T L+RLAR+AG +L +AI LAQAA EV + A A +A AA D MR R GW RAEL+KLCLT VAP+ H T +AIE+L + R+IH ++ APVE++T+TCLLA+A+ L GE ++SI+ Y AR CL RCR+ AAS + G + SE S T + G+ AS + + + K KR V W W+PD DGTPD P K + E S + A D + E V+ Y E L +WKP QL LL+ +R++ + K +I ++ + HP G AA A AA A G+ +S E GSE + D GM L DY+ P E S D PR R+D S+ S S RG VS A RG +VRLAPAHIAPPSRPAP+WV+DMQ+ V +A KV+INRP PF G T+ + GI+RAQ H LQAFRFLCRSGQLFLAEQLA++GVWD G +G + + ++GGG E GLRTAWMATRLKP R AL+ERR+R++QALED +R AG IF+LPR VET AA+ WD+R VP V+++LRSFEKWL RSGVW+ QP L LLTTCGT PRGLK A G AS S RE VAPS+YPT+E LAEMVDPYEAL+CWFYLP G SS + GGA G G VACFVAYHD+GK R S D NG+ K + + +L+ KRAAI ARA GRR +D S+ S GS G DD++DA DFEPG LRVR+ILA PGT +LR+AT+ FL T+RNRN V ++ F
Sbjct: 43 SGGRTPLIRLAREAGGHLLEAISLAQAAVEVAATVAAAEARTNRAANGAGAGSAAVGDDGMRAREGWARAELSKLCLTGVAPDYVRCCRSRRAKYGKLQPHSTQFYVYSLPSPSRPYVKYPAAAIEHLRVAREIHPLDQAPVEYVTSTCLLAKAFHLTGEPERSIQAYSGTAR-------------------------------------------------------------------CLDRCREEMVAASKAMRDGGGMASEPSLRTFGKAGTGSVASGLGAAARPSTKHKRVVEWTWVPDQDGTPDNPIVK-PSPAEAGSATTTS---ATDGRDNATVPENVN-------EAYRAESLARWKPAQLKELLTDLRLDASGSVEKRDIVDKIMRHPGGPAAAAAAAIARGETLAGAAPSVRSTG--------EEGGSEXXXXXXXXXXXXXXXXXXXXXXXXXXDGEEQDGFVGMTLADYMGRPTEEKSNDRYHDNGGGNGAGRPSGPRGXXXXXXXXAARGGNRIDPHAAAPSVSGSTGSGGRGDVSSAASGRGG-RVVRLAPAHIAPPSRPAPEWVVDMQRDKV----SALQRKVVINRPFPFSGVTSPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIVRAQSHALQAFRFLCRSGQLFLAEQLAISGVWDAGTTGPTNENGLITTSPRGLTSTSANRGGGARSE------GLRTAWMATRLKPAARTALAERRERVRQALEDARRFAGARGAIFLLPRVGVETAEAASTEWDLRAVPSQREVIKQLRSFEKWLVRSGVWSAQPLLALLTTCGTAAPRGLKAGTGADGSGASTAKPSSDREFVAPSEYPTEETLAEMVDPYEALVCWFYLPDGGSSD-------VGGGATXXXXXXXXXXXXXXHSGFGQ---------EVACFVAYHDEGKRRP-SDDHGAKNGLGG--KSTKAVTDLEAKRAAIAARAR-GRRQQGEDAEGGSQYSDSSISTGSGXXXXXXXXXGSDDELDAEDFEPGALRVRVILASPGTTLQLRKATDAFLKTLRNRNPVSMFDIVGF 1002 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1878.5130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1878.5130.1 >prot_H-elongata_contig1878.5130.1 ID=prot_H-elongata_contig1878.5130.1|Name=mRNA_H-elongata_contig1878.5130.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1530bp QVVSNDTRDHAEVLLLLARATVEQSGDGGSGDDEARDARKSHGKALETGIback to top mRNA from alignment at H-elongata_contig1878:170..11144+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1878.5130.1 ID=mRNA_H-elongata_contig1878.5130.1|Name=mRNA_H-elongata_contig1878.5130.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=10975bp|location=Sequence derived from alignment at H-elongata_contig1878:170..11144+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1878:170..11144+ >mRNA_H-elongata_contig1878.5130.1 ID=mRNA_H-elongata_contig1878.5130.1|Name=mRNA_H-elongata_contig1878.5130.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=9180bp|location=Sequence derived from alignment at H-elongata_contig1878:170..11144+ (Himanthalia elongata Himel1 dioecious)back to top |