mRNA_H-elongata_contig187767.5128.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig187767.5128.1
Unique NamemRNA_H-elongata_contig187767.5128.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig187767.5128.1 vs. uniprot
Match: A0A6H5JV12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV12_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 3.210e-19
Identity = 33/51 (64.71%), Postives = 45/51 (88.24%), Query Frame = 3 
Query:    3 RDPSDGRVKMQVQQRSYREDWGVINRRGDYSAGFMEIMKTWPDLKNTPSHP 155
            +DPSDG   MQVQQRSY+E+WGVINR+G+Y  G++ +MK+WPD+++TPSHP
Sbjct:   52 KDPSDGVATMQVQQRSYKEEWGVINRQGEYGPGYITVMKSWPDVRDTPSHP 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig187767.5128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JV12_9PHAE3.210e-1964.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig187767contigH-elongata_contig187767:430..735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size156
Cds size126
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig187767.5128.1prot_H-elongata_contig187767.5128.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig187767 459..735 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930073.7120738-UTR-H-elongata_contig187767:429..4581622930073.7120738-UTR-H-elongata_contig187767:429..458Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig187767 430..458 +
1691679270.553216-UTR-H-elongata_contig187767:429..4581691679270.553216-UTR-H-elongata_contig187767:429..458Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig187767 430..458 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930073.7320697-CDS-H-elongata_contig187767:458..5081622930073.7320697-CDS-H-elongata_contig187767:458..508Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187767 459..508 +
1691679270.5637832-CDS-H-elongata_contig187767:458..5081691679270.5637832-CDS-H-elongata_contig187767:458..508Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187767 459..508 +
1622930073.7625299-CDS-H-elongata_contig187767:659..7351622930073.7625299-CDS-H-elongata_contig187767:659..735Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187767 660..735 +
1691679270.5801792-CDS-H-elongata_contig187767:659..7351691679270.5801792-CDS-H-elongata_contig187767:659..735Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187767 660..735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig187767.5128.1

>prot_H-elongata_contig187767.5128.1 ID=prot_H-elongata_contig187767.5128.1|Name=mRNA_H-elongata_contig187767.5128.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
MQVQQRSYREDWGVINRRGDYSAGFMEIMKTWPDLKNTPSHP
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mRNA from alignment at H-elongata_contig187767:430..735+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig187767.5128.1 ID=mRNA_H-elongata_contig187767.5128.1|Name=mRNA_H-elongata_contig187767.5128.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=306bp|location=Sequence derived from alignment at H-elongata_contig187767:430..735+ (Himanthalia elongata Himel1 dioecious)
GCCGTGATCCTTCAGACGGCAGGGTCAAAATGCAAGTTCAGCAGCGGAGC
TACCGAGAAGATTGGGGCGTGATCAACAGGTATAACAGTTAACGTTGCCA
CTCATTTTGTGTCACGGGGTGGAAATGCTTGAAATTATTTTTATGTTAAA
TTTGATGTTTGGTTCATACTAGACTGAGTTGGTGCCATCCCTTCACACTG
ACCTCATGGCTTCCTGGCTCGCAAATTCAGGCGGGGAGACTACAGCGCAG
GATTCATGGAGATCATGAAAACATGGCCAGACTTGAAGAATACGCCTTCC
CACCCA
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Coding sequence (CDS) from alignment at H-elongata_contig187767:430..735+

>mRNA_H-elongata_contig187767.5128.1 ID=mRNA_H-elongata_contig187767.5128.1|Name=mRNA_H-elongata_contig187767.5128.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig187767:430..735+ (Himanthalia elongata Himel1 dioecious)
ATGCAAGTTCAGCAGCGGAGCTACCGAGAAGATTGGGGCGTGATCAACAG
ATGCAAGTTCAGCAGCGGAGCTACCGAGAAGATTGGGGCGTGATCAACAG
GCGGGGAGACTACAGCGCAGGATTCATGGAGATCATGAAAACATGGCCAG
ACTTGAAGAATACGCCTTCCCACCCAGCGGGGAGACTACAGCGCAGGATT
CATGGAGATCATGAAAACATGGCCAGACTTGAAGAATACGCCTTCCCACC
CA
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