mRNA_H-elongata_contig187581.5120.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig187581.5120.1
Unique NamemRNA_H-elongata_contig187581.5120.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig187581.5120.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.480e-21
Identity = 46/106 (43.40%), Postives = 69/106 (65.09%), Query Frame = 1 
Query:    7 LSADCYGATELAMNAVADAELWHRRLGHLNKRTLDFMQRRDDKGITFDGTLADCDVCAVGKSHQLSYPKKTENADIKAPFQLGYADLMGPFAPAAHGGYKYMSKIT 324
            +S +   +  +AM A + A+LWHRRLGH++ R+LD +++ DD G+ + G +  CDVCA+GKS Q  +PKK    D+   FQ+   DLMGP +P A  G++Y+SK  
Sbjct:   20 VSRELDNSPNMAMRAES-ADLWHRRLGHIDSRSLDVLRKIDDNGVDYTGPMETCDVCAIGKSSQRPHPKKA-TYDVSRHFQVS-TDLMGPISPPARRGFRYVSKFV 122
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BLAST of mRNA_H-elongata_contig187581.5120.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 3.410e-21
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:   52 VADAELWHRRLGHLNKRTLDFMQRRDDKGITFDGTLADCDVCAVGKSHQLSYPKKTENADIKAPFQLGYADLMGPFAPAAHGGYKYMSKITD 327
            V  A LWHRR+GH+N ++LD +++  + G+     + DC  CA+GKS Q  +PK+    D+K PFQL + D +GPF P A GG+KY +K  D
Sbjct:  523 VESANLWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEA-TYDVKRPFQLVFVDTLGPFTPTALGGFKYATKFVD 613
[Close]
BLAST of mRNA_H-elongata_contig187581.5120.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.180e-20
Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:   52 VADAELWHRRLGHLNKRTLDFMQRRDDKGITFDGTLADCDVCAVGKSHQLSYPKKTENADIKAPFQLGYADLMGPFAPAAHGGYKYMSKITD 327
            V  A+LWHRR+GH+N ++LD ++++   GI + G + DC  C +GKS Q  +PK      +  PFQL + D +GPF P A GG+KY +K  D
Sbjct:   41 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYG-VSTPFQLVFVDTLGPFTPTALGGFKYATKFVD 131
[Close]
BLAST of mRNA_H-elongata_contig187581.5120.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.200e-20
Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:   52 VADAELWHRRLGHLNKRTLDFMQRRDDKGITFDGTLADCDVCAVGKSHQLSYPKKTENADIKAPFQLGYADLMGPFAPAAHGGYKYMSKITD 327
            V  A+LWHRR+GH+N ++LD ++++   GI + G + DC  C +GKS Q  +PK      +  PFQL + D +GPF P A GG+KY +K  D
Sbjct:  570 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYG-VSTPFQLVFVDTLGPFTPTALGGFKYATKFVD 660
[Close]
BLAST of mRNA_H-elongata_contig187581.5120.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.230e-20
Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:   52 VADAELWHRRLGHLNKRTLDFMQRRDDKGITFDGTLADCDVCAVGKSHQLSYPKKTENADIKAPFQLGYADLMGPFAPAAHGGYKYMSKITD 327
            V  A+LWHRR+GH+N ++LD ++++   GI + G + DC  C +GKS Q  +PK      +  PFQL + D +GPF P A GG+KY +K  D
Sbjct:  692 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYG-VSTPFQLVFVDTLGPFTPTALGGFKYATKFVD 782
[Close]
BLAST of mRNA_H-elongata_contig187581.5120.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.240e-20
Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:   52 VADAELWHRRLGHLNKRTLDFMQRRDDKGITFDGTLADCDVCAVGKSHQLSYPKKTENADIKAPFQLGYADLMGPFAPAAHGGYKYMSKITD 327
            V  A+LWHRR+GH+N ++LD ++++   GI + G + DC  C +GKS Q  +PK      +  PFQL + D +GPF P A GG+KY +K  D
Sbjct:  570 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYG-VSTPFQLVFVDTLGPFTPTALGGFKYATKFVD 660
[Close]
BLAST of mRNA_H-elongata_contig187581.5120.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 9.010e-19
Identity = 39/92 (42.39%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:   52 VADAELWHRRLGHLNKRTLDFMQRRDDKGITFDGTLADCDVCAVGKSHQLSYPKKTENADIKAPFQLGYADLMGPFAPAAHGGYKYMSKITD 327
            V  A+LWHRR+GH+N ++LD +++    G+ + G + DC VC +GKS Q  +PK+     ++ PFQ    D +GPF P A GG+KY +K  D
Sbjct:  283 VESADLWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYGVLR-PFQHVSVDTLGPFTPTALGGFKYATKFVD 373
[Close]
BLAST of mRNA_H-elongata_contig187581.5120.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.710e-18
Identity = 38/92 (41.30%), Postives = 55/92 (59.78%), Query Frame = 1 
Query:   52 VADAELWHRRLGHLNKRTLDFMQRRDDKGITFDGTLADCDVCAVGKSHQLSYPKKTENADIKAPFQLGYADLMGPFAPAAHGGYKYMSKITD 327
            V  A+LWHRR+GH+N ++LD ++++   GI + G + DC  C +GKS Q  +PK      +  PFQL + D  GPF     GG+KY +K  D
Sbjct:  475 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYG-VSTPFQLVFVDTFGPFTSTTLGGFKYATKFVD 565
[Close]
BLAST of mRNA_H-elongata_contig187581.5120.1 vs. uniprot
Match: A0A6H5JT61_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT61_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.080e-17
Identity = 40/107 (37.38%), Postives = 62/107 (57.94%), Query Frame = 1 
Query:    7 LSADCYGATELAMNAVADAELWHRRLGHLNKRTLDFMQRRDDKGITFDGTLADCDVCAVGKSHQLSYPKKTENADIKAPFQLGYADLMGPFAPAAHGGYKYMSKITD 327
            L  +   A  +A     +A   HRRLGHLN R++  ++++++  + F  ++  CD+CA+ KS QL++PKKT   +  AP  L Y D+MG   P A GG+ Y+S   D
Sbjct:   88 LGGERSSAGGVAFATTVNANTPHRRLGHLNFRSMKLLRKKEENEVDFSDSMTPCDICAISKSTQLAHPKKTSR-ETTAPMLLVYTDIMGKTTPLAKGGFGYVSMFND 193
[Close]
BLAST of mRNA_H-elongata_contig187581.5120.1 vs. uniprot
Match: A0A6H5JKW9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW9_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.800e-17
Identity = 37/92 (40.22%), Postives = 56/92 (60.87%), Query Frame = 1 
Query:   52 VADAELWHRRLGHLNKRTLDFMQRRDDKGITFDGTLADCDVCAVGKSHQLSYPKKTENADIKAPFQLGYADLMGPFAPAAHGGYKYMSKITD 327
            V  A+LWHRR+GH+N ++LD +++    G+ + G + DC VC +GKS Q  +PK+     ++ PFQ    D +GPF P A  G+K  +K  D
Sbjct:  638 VESADLWHRRMGHINGKSLDVLRKEPVNGVDYTGDVKDCSVCPLGKSAQQPHPKQATYGVLR-PFQHVSVDTLGPFTPTALSGFKVATKFVD 728
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig187581.5120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBU1_9PHAE2.480e-2143.40CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JBV6_9PHAE3.410e-2144.57Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KNH5_9PHAE2.180e-2043.48Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJN3_9PHAE2.200e-2043.48Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJH6_9PHAE2.230e-2043.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE2.240e-2043.48Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KXM1_9PHAE9.010e-1942.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYB5_9PHAE1.710e-1841.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT61_9PHAE1.080e-1737.38Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JKW9_9PHAE2.800e-1740.22Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig187581contigH-elongata_contig187581:741..1067 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score62.4
Seed ortholog evalue1.5e-07
Seed eggNOG ortholog7425.NV21130-PA
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BGB6@33208,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930071.7128847-CDS-H-elongata_contig187581:740..10671622930071.7128847-CDS-H-elongata_contig187581:740..1067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187581 741..1067 -
1691679270.0930717-CDS-H-elongata_contig187581:740..10671691679270.0930717-CDS-H-elongata_contig187581:740..1067Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187581 741..1067 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig187581.5120.1prot_H-elongata_contig187581.5120.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig187581 741..1067 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig187581.5120.1

>prot_H-elongata_contig187581.5120.1 ID=prot_H-elongata_contig187581.5120.1|Name=mRNA_H-elongata_contig187581.5120.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
LYLSADCYGATELAMNAVADAELWHRRLGHLNKRTLDFMQRRDDKGITFD
GTLADCDVCAVGKSHQLSYPKKTENADIKAPFQLGYADLMGPFAPAAHGG
YKYMSKITD
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mRNA from alignment at H-elongata_contig187581:741..1067-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig187581.5120.1 ID=mRNA_H-elongata_contig187581.5120.1|Name=mRNA_H-elongata_contig187581.5120.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=327bp|location=Sequence derived from alignment at H-elongata_contig187581:741..1067- (Himanthalia elongata Himel1 dioecious)
CTTTACCTAAGCGCTGATTGCTACGGTGCGACAGAATTGGCGATGAATGC
AGTCGCAGACGCCGAACTATGGCACCGACGGCTAGGTCACCTGAATAAAA
GGACCCTGGACTTTATGCAACGGCGTGATGATAAGGGCATCACCTTCGAC
GGGACCTTAGCAGACTGCGACGTTTGTGCTGTGGGGAAAAGTCATCAGTT
GTCTTACCCCAAGAAGACTGAAAACGCTGATATTAAGGCGCCCTTCCAGC
TAGGGTACGCAGACCTGATGGGGCCATTTGCTCCGGCAGCTCACGGAGGT
TACAAGTATATGAGCAAGATCACAGAC
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Coding sequence (CDS) from alignment at H-elongata_contig187581:741..1067-

>mRNA_H-elongata_contig187581.5120.1 ID=mRNA_H-elongata_contig187581.5120.1|Name=mRNA_H-elongata_contig187581.5120.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig187581:741..1067- (Himanthalia elongata Himel1 dioecious)
CTTTACCTAAGCGCTGATTGCTACGGTGCGACAGAATTGGCGATGAATGC
AGTCGCAGACGCCGAACTATGGCACCGACGGCTAGGTCACCTGAATAAAA
GGACCCTGGACTTTATGCAACGGCGTGATGATAAGGGCATCACCTTCGAC
GGGACCTTAGCAGACTGCGACGTTTGTGCTGTGGGGAAAAGTCATCAGTT
GTCTTACCCCAAGAAGACTGAAAACGCTGATATTAAGGCGCCCTTCCAGC
TAGGGTACGCAGACCTGATGGGGCCATTTGCTCCGGCAGCTCACGGAGGT
TACAAGTATATGAGCAAGATCACAGACCTTTACCTAAGCGCTGATTGCTA
CGGTGCGACAGAATTGGCGATGAATGCAGTCGCAGACGCCGAACTATGGC
ACCGACGGCTAGGTCACCTGAATAAAAGGACCCTGGACTTTATGCAACGG
CGTGATGATAAGGGCATCACCTTCGACGGGACCTTAGCAGACTGCGACGT
TTGTGCTGTGGGGAAAAGTCATCAGTTGTCTTACCCCAAGAAGACTGAAA
ACGCTGATATTAAGGCGCCCTTCCAGCTAGGGTACGCAGACCTGATGGGG
CCATTTGCTCCGGCAGCTCACGGAGGTTACAAGTATATGAGCAAGATCAC
AGAC
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