prot_H-elongata_contig187556.5119.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig187556.5119.1
Unique Nameprot_H-elongata_contig187556.5119.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length45
Homology
BLAST of mRNA_H-elongata_contig187556.5119.1 vs. uniprot
Match: A0A6H5L8Q2_9PHAE (Nop domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L8Q2_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 3.940e-16
Identity = 37/43 (86.05%), Postives = 42/43 (97.67%), Query Frame = 0
Query:    2 VGRRWRGEIEEKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 44
            VGR+WR E+E+KIEKWQE+QTAKTKKALPKPDDMPARKRGG+R
Sbjct:  386 VGRQWRAEVEDKIEKWQEMQTAKTKKALPKPDDMPARKRGGRR 428          
BLAST of mRNA_H-elongata_contig187556.5119.1 vs. uniprot
Match: M4C0I9_HYAAE (Nop domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C0I9_HYAAE)

HSP 1 Score: 59.7 bits (143), Expect = 3.260e-9
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 0
Query:    2 VGRRWRGEIEEKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 44
            VG R+R E+ EK+EKWQE Q AKTKKALP PD+ P+RKRGGKR
Sbjct:  356 VGARFRTELVEKMEKWQEPQKAKTKKALPIPDEKPSRKRGGKR 398          
BLAST of mRNA_H-elongata_contig187556.5119.1 vs. uniprot
Match: A0A7S2XZL3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZL3_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.140e-8
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 0
Query:    2 VGRRWRGEIEEKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 44
            +G++ R E+E+KIEKWQE Q AKTKKALP PD  P +KRGGKR
Sbjct:  290 LGKKLRTELEDKIEKWQEPQKAKTKKALPAPDSKPKKKRGGKR 332          
BLAST of mRNA_H-elongata_contig187556.5119.1 vs. uniprot
Match: A0A836CKH5_9STRA (Nop domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKH5_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.140e-8
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 0
Query:    2 VGRRWRGEIEEKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 44
            VGRR+R E+E K+EKWQE   AK K+ALPKPD+ P  KRGGKR
Sbjct:  338 VGRRFRSELEAKLEKWQEPDQAKIKRALPKPDEAPKSKRGGKR 380          
BLAST of mRNA_H-elongata_contig187556.5119.1 vs. uniprot
Match: A0A024U7H9_9STRA (Nop domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024U7H9_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.910e-8
Identity = 27/43 (62.79%), Postives = 36/43 (83.72%), Query Frame = 0
Query:    2 VGRRWRGEIEEKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 44
            +G+++  E++EK EKWQ+ Q AKTKKALP+PD+ P RKRGGKR
Sbjct:  330 IGQQFYKELQEKFEKWQQPQKAKTKKALPRPDEKPRRKRGGKR 372          
BLAST of mRNA_H-elongata_contig187556.5119.1 vs. uniprot
Match: A0A0N7L588_PLAHL (U4 u6 small nuclear ribonucleoprotein prp31-like n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L588_PLAHL)

HSP 1 Score: 56.6 bits (135), Expect = 3.980e-8
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 0
Query:    2 VGRRWRGEIEEKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 44
            VG R+R E+ EK++KWQE Q AK+KKALP PD+ P RKRGGKR
Sbjct:  358 VGARFRTELVEKMDKWQEPQKAKSKKALPVPDEKPRRKRGGKR 400          
BLAST of mRNA_H-elongata_contig187556.5119.1 vs. uniprot
Match: A0A3R7INK8_9STRA (Nop domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7INK8_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 5.450e-8
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 0
Query:    2 VGRRWRGEIEEKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 44
            VG R+R E+  K+EKWQE Q AKTKKALP PD+ P RKRGGKR
Sbjct:  371 VGARFRTELVGKMEKWQEPQKAKTKKALPIPDEKPRRKRGGKR 413          
BLAST of mRNA_H-elongata_contig187556.5119.1 vs. uniprot
Match: D0MZW3_PHYIT (U4/U6 small nuclear ribonucleoprotein Prp31 n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MZW3_PHYIT)

HSP 1 Score: 56.2 bits (134), Expect = 5.450e-8
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 0
Query:    2 VGRRWRGEIEEKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 44
            VG R+R E+  K+EKWQE Q AKTKKALP PD+ P RKRGGKR
Sbjct:  362 VGARFRTELVGKMEKWQEPQKAKTKKALPIPDEKPRRKRGGKR 404          
BLAST of mRNA_H-elongata_contig187556.5119.1 vs. uniprot
Match: H3G8Y1_PHYRM (Nop domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=H3G8Y1_PHYRM)

HSP 1 Score: 56.2 bits (134), Expect = 5.450e-8
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 0
Query:    2 VGRRWRGEIEEKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 44
            VG R+R E+  K+EKWQE Q AKTKKALP PD+ P RKRGGKR
Sbjct:  354 VGARFRTELVGKMEKWQEPQKAKTKKALPIPDEKPRRKRGGKR 396          
BLAST of mRNA_H-elongata_contig187556.5119.1 vs. uniprot
Match: A0A225X1E4_9STRA (U4/U6 small nuclear ribonucleoprotein Prp31 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X1E4_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 5.450e-8
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 0
Query:    2 VGRRWRGEIEEKIEKWQELQTAKTKKALPKPDDMPARKRGGKR 44
            VG R+R E+  K+EKWQE Q AKTKKALP PD+ P RKRGGKR
Sbjct:  349 VGARFRTELVGKMEKWQEPQKAKTKKALPIPDEKPRRKRGGKR 391          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig187556.5119.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L8Q2_9PHAE3.940e-1686.05Nop domain-containing protein n=2 Tax=Ectocarpus T... [more]
M4C0I9_HYAAE3.260e-972.09Nop domain-containing protein n=1 Tax=Hyaloperonos... [more]
A0A7S2XZL3_9STRA1.140e-867.44Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CKH5_9STRA1.140e-867.44Nop domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A024U7H9_9STRA2.910e-862.79Nop domain-containing protein n=3 Tax=Aphanomyces ... [more]
A0A0N7L588_PLAHL3.980e-867.44U4 u6 small nuclear ribonucleoprotein prp31-like n... [more]
A0A3R7INK8_9STRA5.450e-869.77Nop domain-containing protein n=3 Tax=Phytophthora... [more]
D0MZW3_PHYIT5.450e-869.77U4/U6 small nuclear ribonucleoprotein Prp31 n=2 Ta... [more]
H3G8Y1_PHYRM5.450e-869.77Nop domain-containing protein n=17 Tax=Phytophthor... [more]
A0A225X1E4_9STRA5.450e-869.77U4/U6 small nuclear ribonucleoprotein Prp31 n=1 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019175Prp31 C-terminalPFAMPF09785Prp31_Ccoord: 24..44
e-value: 2.1E-5
score: 25.4
IPR027105U4/U6 small nuclear ribonucleoprotein Prp31PANTHERPTHR13904PRE-MRNA SPLICING FACTOR PRP31coord: 1..44
NoneNo IPR availablePANTHERPTHR13904:SF0U4/U6 SMALL NUCLEAR RIBONUCLEOPROTEIN PRP31coord: 1..44

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig187556contigH-elongata_contig187556:805..939 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig187556.5119.1mRNA_H-elongata_contig187556.5119.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig187556 805..939 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig187556.5119.1 ID=prot_H-elongata_contig187556.5119.1|Name=mRNA_H-elongata_contig187556.5119.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
QVGRRWRGEIEEKIEKWQELQTAKTKKALPKPDDMPARKRGGKRS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019175Prp31_C
IPR027105Prp31