mRNA_H-elongata_contig18741.5114.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18741.5114.1
Unique NamemRNA_H-elongata_contig18741.5114.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18741.5114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18741contigH-elongata_contig18741:3216..4661 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_002060.1
Hectar predicted targeting categoryother localisation
Exons3
Model size915
Cds size915
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18741.5114.1prot_H-elongata_contig18741.5114.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18741 3216..4661 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930071.0531602-CDS-H-elongata_contig18741:3215..36041622930071.0531602-CDS-H-elongata_contig18741:3215..3604Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18741 3216..3604 +
1691679269.7757182-CDS-H-elongata_contig18741:3215..36041691679269.7757182-CDS-H-elongata_contig18741:3215..3604Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18741 3216..3604 +
1622930071.0683022-CDS-H-elongata_contig18741:3796..42591622930071.0683022-CDS-H-elongata_contig18741:3796..4259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18741 3797..4259 +
1691679269.7856543-CDS-H-elongata_contig18741:3796..42591691679269.7856543-CDS-H-elongata_contig18741:3796..4259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18741 3797..4259 +
1622930071.096246-CDS-H-elongata_contig18741:4598..46611622930071.096246-CDS-H-elongata_contig18741:4598..4661Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18741 4599..4661 +
1691679269.7973616-CDS-H-elongata_contig18741:4598..46611691679269.7973616-CDS-H-elongata_contig18741:4598..4661Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18741 4599..4661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18741.5114.1

>prot_H-elongata_contig18741.5114.1 ID=prot_H-elongata_contig18741.5114.1|Name=mRNA_H-elongata_contig18741.5114.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=305bp
MDADDIEDAVDAAADVYDDPVDYDDDDEEDDGVGENEKVDHDNDHVGEDY
EDHDNDVENNEQETPGADEPVAVYDVDVDLKVEDGSGAPAGDTTDTPKGF
TTCDDANMTATQEKKVEGALSDDNEDPEVDIGTGGKDLVGKGKGKNKKKK
TGVDDQGQDNKRDKTFGHKSAISGKDGGDEGGDDQSLEGSSLAGKAKGSR
AEKKSVGTNGKKSAKIAKSSSSGKPGVDKTSKAAAKVKAGSKASAKSGSS
KTSATSSIGKGGDKAKAKDKRSTLEEKRERGGRPRLYQDLAGDRDFISGR
GTLGV
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mRNA from alignment at H-elongata_contig18741:3216..4661+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18741.5114.1 ID=mRNA_H-elongata_contig18741.5114.1|Name=mRNA_H-elongata_contig18741.5114.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1446bp|location=Sequence derived from alignment at H-elongata_contig18741:3216..4661+ (Himanthalia elongata Himel1 dioecious)
ATGGATGCGGATGACATTGAAGACGCCGTCGACGCCGCCGCCGATGTCTA
CGACGACCCCGTCGATTATGATGACGACGATGAGGAAGACGATGGGGTCG
GTGAAAATGAAAAGGTTGATCATGATAATGACCATGTCGGTGAAGATTAC
GAAGATCACGACAACGACGTCGAGAATAATGAGCAGGAGACGCCTGGGGC
AGATGAACCCGTCGCAGTGTACGATGTTGATGTTGATTTGAAGGTAGAGG
ACGGCAGCGGAGCCCCAGCCGGCGACACAACAGACACGCCGAAGGGATTC
ACGACGTGTGACGATGCGAATATGACCGCTACCCAGGAGAAAAAGGTAGA
AGGAGCATTAAGCGACGACAATGAGGATCCTGAAGTGGAGCAAGATGCGG
TCGCTAGGACCGAAAATGAGGACGGTGTCGAGAACACAGATGTCCTTGCC
GAGGAGTCCGTAGCACCCATGGAGGAATCCGAGGACGCTACGAATGATTC
TGGTGATCTTGCGGTGGGATCCGTTGATGCTGGGGAGACACCCGATGCTT
CTCAAAAAGGTGCAGATTCTTCTGGGAAAAGCATCGGAACTGGTGGGAAG
GATTTAGTGGGCAAGGGAAAAGGAAAAAATAAGAAGAAAAAGACTGGCGT
TGACGACCAAGGGCAAGATAATAAGCGTGACAAGACTTTCGGTCACAAGT
CGGCGATTAGTGGTAAAGACGGTGGTGATGAAGGTGGCGACGATCAATCT
CTTGAGGGATCATCCTTAGCCGGCAAAGCTAAGGGGTCCCGGGCAGAAAA
AAAATCGGTGGGTACGAACGGCAAGAAAAGCGCGAAAATCGCTAAGTCGA
GCAGCAGCGGTAAACCAGGCGTCGACAAAACCTCAAAAGCGGCGGCGAAG
GTCAAGGCCGGGTCCAAGGCCAGCGCAAAAAGTGGGAGTTCCAAGACCTC
CGCGACCTCTTCAATTGGCAAAGGTGGCGACAAGGCCAAGGCGAAAGACA
AGAGATCTACGTTGGAAGAGAAGCGAGAAAGGGGCGGGCGTCCGGTAAGG
CGCAGCCTGTGATCGACAATATAATGCGCAGCTTTCTCCTCAAGAGTGTA
CATTGTAGCGTGCTAGTCGAACACGAATATGTTCCGGTCGAACGCGAGGT
GTAATGGGCAGTCCTGTACACGTACAGGCCGTACGCCCCCCCCCCCCCAC
CTCTCTTCCTCTCTCTCTCCTTCTCTTCCCTTCTCGTTGTCACTTGGTCA
GCGAGGCCCATCCTGCGTGCTTACTTTACTAAAACTTTCTTTTTAATCTC
TTTCTACTGCTCCATTCCCACCAATCTACTCTTGAAATGAAACTTCCGCG
AATCATCGTGGGGGGGAACGCGTCGAGGCGCAGCGCTTGTACCAAGATTT
GGCGGGTGACCGCGATTTCATCAGCGGGCGTGGTACCCTCGGCGTC
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Coding sequence (CDS) from alignment at H-elongata_contig18741:3216..4661+

>mRNA_H-elongata_contig18741.5114.1 ID=mRNA_H-elongata_contig18741.5114.1|Name=mRNA_H-elongata_contig18741.5114.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1830bp|location=Sequence derived from alignment at H-elongata_contig18741:3216..4661+ (Himanthalia elongata Himel1 dioecious)
ATGGATGCGGATGACATTGAAGACGCCGTCGACGCCGCCGCCGATGTCTA
CGACGACCCCGTCGATTATGATGACGACGATGAGGAAGACGATGGGGTCG
GTGAAAATGAAAAGGTTGATCATGATAATGACCATGTCGGTGAAGATTAC
GAAGATCACGACAACGACGTCGAGAATAATGAGCAGGAGACGCCTGGGGC
AGATGAACCCGTCGCAGTGTACGATGTTGATGTTGATTTGAAGGTAGAGG
ACGGCAGCGGAGCCCCAGCCGGCGACACAACAGACACGCCGAAGGGATTC
ACGACGTGTGACGATGCGAATATGACCGCTACCCAGGAGAAAAAGGTAGA
AGGAGCATTAAGCGACGACAATGAGGATCCTGAAGTGGAATGGATGCGGA
TGACATTGAAGACGCCGTCGACGCCGCCGCCGATGTCTACGACGACCCCG
TCGATTATGATGACGACGATGAGGAAGACGATGGGGTCGGTGAAAATGAA
AAGGTTGATCATGATAATGACCATGTCGGTGAAGATTACGAAGATCACGA
CAACGACGTCGAGAATAATGAGCAGGAGACGCCTGGGGCAGATGAACCCG
TCGCAGTGTACGATGTTGATGTTGATTTGAAGGTAGAGGACGGCAGCGGA
GCCCCAGCCGGCGACACAACAGACACGCCGAAGGGATTCACGACGTGTGA
CGATGCGAATATGACCGCTACCCAGGAGAAAAAGGTAGAAGGAGCATTAA
GCGACGACAATGAGGATCCTGAAGTGGACATCGGAACTGGTGGGAAGGAT
TTAGTGGGCAAGGGAAAAGGAAAAAATAAGAAGAAAAAGACTGGCGTTGA
CGACCAAGGGCAAGATAATAAGCGTGACAAGACTTTCGGTCACAAGTCGG
CGATTAGTGGTAAAGACGGTGGTGATGAAGGTGGCGACGATCAATCTCTT
GAGGGATCATCCTTAGCCGGCAAAGCTAAGGGGTCCCGGGCAGAAAAAAA
ATCGGTGGGTACGAACGGCAAGAAAAGCGCGAAAATCGCTAAGTCGAGCA
GCAGCGGTAAACCAGGCGTCGACAAAACCTCAAAAGCGGCGGCGAAGGTC
AAGGCCGGGTCCAAGGCCAGCGCAAAAAGTGGGAGTTCCAAGACCTCCGC
GACCTCTTCAATTGGCAAAGGTGGCGACAAGGCCAAGGCGAAAGACAAGA
GATCTACGTTGGAAGAGAAGCGAGAAAGGGGCGGGCGTCCGCATCGGAAC
TGGTGGGAAGGATTTAGTGGGCAAGGGAAAAGGAAAAAATAAGAAGAAAA
AGACTGGCGTTGACGACCAAGGGCAAGATAATAAGCGTGACAAGACTTTC
GGTCACAAGTCGGCGATTAGTGGTAAAGACGGTGGTGATGAAGGTGGCGA
CGATCAATCTCTTGAGGGATCATCCTTAGCCGGCAAAGCTAAGGGGTCCC
GGGCAGAAAAAAAATCGGTGGGTACGAACGGCAAGAAAAGCGCGAAAATC
GCTAAGTCGAGCAGCAGCGGTAAACCAGGCGTCGACAAAACCTCAAAAGC
GGCGGCGAAGGTCAAGGCCGGGTCCAAGGCCAGCGCAAAAAGTGGGAGTT
CCAAGACCTCCGCGACCTCTTCAATTGGCAAAGGTGGCGACAAGGCCAAG
GCGAAAGACAAGAGATCTACGTTGGAAGAGAAGCGAGAAAGGGGCGGGCG
TCCGCGCTTGTACCAAGATTTGGCGGGTGACCGCGATTTCATCAGCGGGC
GTGGTACCCTCGGCGTCCGCTTGTACCAAGATTTGGCGGGTGACCGCGAT
TTCATCAGCGGGCGTGGTACCCTCGGCGTC
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