mRNA_H-elongata_contig187379.5111.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig187379.5111.1
Unique NamemRNA_H-elongata_contig187379.5111.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig187379.5111.1 vs. uniprot
Match: D7FXD3_ECTSI (DDE-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD3_ECTSI)

HSP 1 Score: 311 bits (798), Expect = 2.810e-104
Identity = 159/253 (62.85%), Postives = 190/253 (75.10%), Query Frame = 1
Query:    1 IAFGTVKKLRKALLEHAGKIFVERNPRASDELPVNGEELSSEQLESVTAEVFQELGNMDQTPVQHEMPVARKMPAS-AREVKVLRLRKEKERFNLCLAVMADDSKVSLRIIFKDTPFKPPNKQWKGKKTQPRKGSIAAEVAPGNCTKFGHSAAGLSFGVQENSWCNARECTLWISESWRLRPINGRIITQRPSILVLDDFKCHRDEAFIANLRKRCNTSVILIPGGLTPLLQPQDRMLNKQMKRLLRGKYTAY 756
            +A+ T+ KLR+AL+E A +I+  RNP A  E P+ GE+L+SEQLESVTAEVF ELGNMDQTPVQHEMPV   +  + A++ ++    KEKERF LCLAV  D  KV LR IFK TP  PP++  KGK TQPRK SIA E+ P N +K G+   G+SFGVQE SWC+ REC LWI  SW LRP NG ++ QRP ILVLDDFKCH+D+ FIA L+++ NT VI IPGGLTPLLQP DRMLNK+MKRLLRG YT Y
Sbjct:    1 MAWATLMKLREALVERADEIYARRNPPAPGESPIKGEDLTSEQLESVTAEVFVELGNMDQTPVQHEMPVETSLEKTGAKDARIATGGKEKERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMYTNY 253          
BLAST of mRNA_H-elongata_contig187379.5111.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 310 bits (793), Expect = 3.140e-101
Identity = 162/253 (64.03%), Postives = 190/253 (75.10%), Query Frame = 1
Query:    1 IAFGTVKKLRKALLEHAGKIFVERNPRASDELPVNGEELSSEQLESVTAEVFQELGNMDQTPVQHEMPVARKMPAS-AREVKVLRLRKEKERFNLCLAVMADDSKVSLRIIFKDTPFKPPNKQWKGKKTQPRKGSIAAEVAPGNCTKFGHSAAGLSFGVQENSWCNARECTLWISESWRLRPINGRIITQRPSILVLDDFKCHRDEAFIANLRKRCNTSVILIPGGLTPLLQPQDRMLNKQMKRLLRGKYTAY 756
            +A+ TV KLR+AL+  AG+I+  R+P A DE P+ GE+L+ EQL SV AEVF+ELGNMDQTPVQHEMPV   +  + A++ ++    KEKERF L LAVMAD  KVS RIIFK TPF PP    KGK T PRK S+A E+ P N  K  H A G+SFGVQE SW + REC  WIS SW+LRP NG I+ QRP ILVLDDFKCH+DE +IA L++  NT VI+IPGGLTPLLQP DRMLNKQMKRLLRGKYTAY
Sbjct:   63 MAWATVMKLREALVRRAGEIYARRHPPAPDESPIKGEDLTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 315          
BLAST of mRNA_H-elongata_contig187379.5111.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 310 bits (794), Expect = 9.450e-101
Identity = 162/253 (64.03%), Postives = 190/253 (75.10%), Query Frame = 1
Query:    1 IAFGTVKKLRKALLEHAGKIFVERNPRASDELPVNGEELSSEQLESVTAEVFQELGNMDQTPVQHEMPVARKMPAS-AREVKVLRLRKEKERFNLCLAVMADDSKVSLRIIFKDTPFKPPNKQWKGKKTQPRKGSIAAEVAPGNCTKFGHSAAGLSFGVQENSWCNARECTLWISESWRLRPINGRIITQRPSILVLDDFKCHRDEAFIANLRKRCNTSVILIPGGLTPLLQPQDRMLNKQMKRLLRGKYTAY 756
            +A+ TV KLR+AL++ AG+I+  R+P A DE P+ GE+L+SEQL SV AEVF+ELGNMDQTPVQHE+PV   +  + A++ ++    KEKERF L LAVMAD  KVS RIIFK TPF PP    KGK T PRK S+A E+ P N  K GH A G+SFGVQE SW + REC  WIS SW+LRP NG I+ QRP ILVLDDFKCH+DE FIA L++  NT VI IPG LTPLLQP DRMLNKQMKRLLR KYTAY
Sbjct:   63 MAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAY 315          
BLAST of mRNA_H-elongata_contig187379.5111.1 vs. uniprot
Match: A0A6H5KRZ1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ1_9PHAE)

HSP 1 Score: 309 bits (792), Expect = 4.540e-99
Identity = 165/259 (63.71%), Postives = 186/259 (71.81%), Query Frame = 1
Query:    1 IAFGTVKKLRKALLEHAGKIFVERNPRASDELPVNGEELSSEQLESVTAEVFQELGNMDQTPVQHEMPV-------ARKMPASAREVKVLRLRKEKERFNLCLAVMADDSKVSLRIIFKDTPFKPPNKQWKGKKTQPRKGSIAAEVAPGNCTKFGHSAAGLSFGVQENSWCNARECTLWISESWRLRPINGRIITQRPSILVLDDFKCHRDEAFIANLRKRCNTSVILIPGGLTPLLQPQDRMLNKQMKRLLRGKYTAY 756
            +A+ T+ KLRKALLE AGKI+ +R P A  E P+ GE+LSS QLE VT E+F+ELGNMDQTPVQHE PV        R+MPAS  E          ERF LCLAV AD  KV LRIIFK TPF PP    KGK TQPRK SIA EV P N +K G    G+SFGVQE SWC+ REC LWI +SW+LRP NG I+ QR  ILVLDDFKCH+D+ FIA L++  NT VI IPGGLTPLLQP DRMLNKQMKRLLRG YTA+
Sbjct:  187 MAWATLMKLRKALLERAGKIYAQRYPPAPGENPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHETPVERLWKRPVRRMPASPPE----------ERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAH 435          
BLAST of mRNA_H-elongata_contig187379.5111.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE)

HSP 1 Score: 300 bits (769), Expect = 2.160e-97
Identity = 158/248 (63.71%), Postives = 184/248 (74.19%), Query Frame = 1
Query:   16 VKKLRKALLEHAGKIFVERNPRASDELPVNGEELSSEQLESVTAEVFQELGNMDQTPVQHEMPVARKMPAS-AREVKVLRLRKEKERFNLCLAVMADDSKVSLRIIFKDTPFKPPNKQWKGKKTQPRKGSIAAEVAPGNCTKFGHSAAGLSFGVQENSWCNARECTLWISESWRLRPINGRIITQRPSILVLDDFKCHRDEAFIANLRKRCNTSVILIPGGLTPLLQPQDRMLNKQMKRLLRGKYTAY 756
            V KLR+AL++ AG+I+  R+P A DE P+ GE+L+SEQL SV AEVF++LGNMDQTPVQHEMPV   +  + A++ +V    +EKERF L LAV AD  KVSLRIIF  TPF PP    KGK T PRK S+A E+ P N  K GH A G+SFGVQE SW + REC  W S SW+LRP NG I+ QRP ILVLDDFKCH+DE FIA L++  NT VI IPGGLTPLLQP DRMLNKQ KRLLR KYTAY
Sbjct:    2 VMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEDLGNMDQTPVQHEMPVETTLEKTGAKDARVSTGGEEKERFTLVLAVTADGKKVSLRIIFMGTPFIPPTVSGKGKSTLPRKNSVAWEMHPTNRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQTKRLLRSKYTAY 249          
BLAST of mRNA_H-elongata_contig187379.5111.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 311 bits (796), Expect = 5.720e-95
Identity = 161/253 (63.64%), Postives = 187/253 (73.91%), Query Frame = 1
Query:    1 IAFGTVKKLRKALLEHAGKIFVERNPRASDELPVNGEELSSEQLESVTAEVFQELGNMDQTPVQHEMPVARKMP-ASAREVKVLRLRKEKERFNLCLAVMADDSKVSLRIIFKDTPFKPPNKQWKGKKTQPRKGSIAAEVAPGNCTKFGHSAAGLSFGVQENSWCNARECTLWISESWRLRPINGRIITQRPSILVLDDFKCHRDEAFIANLRKRCNTSVILIPGGLTPLLQPQDRMLNKQMKRLLRGKYTAY 756
            +A+ T+ KLRKALLE AG+I+ +R P A  E P+ GE+LSS QLE VT E+F+ELGNMDQTPVQHEMPV   +    A++ ++    KEKERF LCLAV AD  KV LRIIFK TPF PP    KGK TQPRK SIA EV P N +K G    G+SFGVQE SWC+ REC LWI +SW+LRP NG I+ QR  ILVLDDFKCH+D+ FIA L++  NT VI IPGGL PL QP DRMLNKQMKRLLRG YTA+
Sbjct:  217 MAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLENTGAKDARIATGGKEKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMYTAH 469          
BLAST of mRNA_H-elongata_contig187379.5111.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE)

HSP 1 Score: 298 bits (762), Expect = 1.620e-93
Identity = 158/254 (62.20%), Postives = 187/254 (73.62%), Query Frame = 1
Query:    1 IAFGTVKKLRKALLEHAGKIFVERNPRASDELPVNGEELSSEQLESVTAEVFQELGNMDQTPVQHEMPVARKMPAS-AREVKVLRLR-KEKERFNLCLAVMADDSKVSLRIIFKDTPFKPPNKQWKGKKTQPRKGSIAAEVAPGNCTKFGHSAAGLSFGVQENSWCNARECTLWISESWRLRPINGRIITQRPSILVLDDFKCHRDEAFIANLRKRCNTSVILIPGGLTPLLQPQDRMLNKQMKRLLRGKYTAY 756
            +A+ TV KL +AL++ AG+I+  R+P A DE P+ GE+L+SEQL SV AEVF+E+GNMDQ PVQHEMPV   +  + A++ ++      EKERF L LAV AD  KVS RIIF+ TPF PP    KGK T+PRK  +A E+ P N  K GH A G+SFGVQE SW + REC  WIS SW+LRP NG I+ QRP ILVLDDFKCH DE FIA L++  NT VI IPGGLTPLLQP DRMLNKQMKRLLRGKYTAY
Sbjct:  257 MAWATVMKLCEALVKRAGEIYARRHPPAPDESPIKGEDLNSEQLASVEAEVFEEVGNMDQMPVQHEMPVETTLDKTGAKDARISTGGGNEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 510          
BLAST of mRNA_H-elongata_contig187379.5111.1 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE)

HSP 1 Score: 296 bits (757), Expect = 1.790e-93
Identity = 160/261 (61.30%), Postives = 184/261 (70.50%), Query Frame = 1
Query:    1 IAFGTVKKLRKALLEHAGKIFVERNPRASDELPVNGEELSSEQLESVTAEVFQELGNMDQTPVQHEMPVARKMP-ASAREVKVLRLRKEKERFNLCLAVMADDSKVSLRIIFKDTPFKPPNKQWKGKKTQPRKGSIAAEVAPGNCTKFGHSAAGLSFGVQENSWCNARECTLWISESWRL--------RPINGRIITQRPSILVLDDFKCHRDEAFIANLRKRCNTSVILIPGGLTPLLQPQDRMLNKQMKRLLRGKYTAY 756
            +A+ TV KLR+AL++ AG+I+  R+P A DE P+ GE+L+SEQ  SV AEVF+ELGNMDQTPVQHEMPV   +     ++ ++    KEKERF L LAVMAD   VS  IIFK TPF PP    KGK T PRK S+A EV P N  K GH A G+SFGVQE SW   +EC  WI  SW+L        RP NG I+ QRP ILVLDDFKCH+DE FIA L +  NT VI IPGGLTPLLQP DRMLNKQMKRLLRGKYTAY
Sbjct:  217 MAWATVTKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQPASVEAEVFEELGNMDQTPVQHEMPVETTLEDTGGKDARISTGGKEKERFTLVLAVMADGKMVSPCIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEVHPANRAKHGHPANGMSFGVQEKSWSGQQECNGWIPGSWKLCPNNGSMXRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALNRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 477          
BLAST of mRNA_H-elongata_contig187379.5111.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 293 bits (750), Expect = 7.390e-93
Identity = 160/279 (57.35%), Postives = 192/279 (68.82%), Query Frame = 1
Query:    1 IAFGTVKKLRKALLEHAGKIFVERNPRASDELPVNGEELSSEQLESVTAEVFQELGNMDQTPVQHEMPVARKMPAS-AREVKVLR------LR--------------------KEKERFNLCLAVMADDSKVSLRIIFKDTPFKPPNKQWKGKKTQPRKGSIAAEVAPGNCTKFGHSAAGLSFGVQENSWCNARECTLWISESWRLRPINGRIITQRPSILVLDDFKCHRDEAFIANLRKRCNTSVILIPGGLTPLLQPQDRMLNKQMKRLLRGKYTAY 756
            +A+ T+ KLRKALLE AG+I+ +R P A  E P+ GE+LSS QLE VT E+F++LGNMDQTPVQ+EMPV   +  + A++ ++        +R                    KEKERF LCLAV AD +KV LRIIFK TPF PP    KGK TQPRK SIA EV P N +K G    G+SFGVQE SWC+ RE  LWI +SW+LRP NG ++ QR  ILVLDDFKCH+D+ FIA L++  NT VI IPGGLTPLLQP DRMLNKQMKRLLRG YTA+
Sbjct:  150 MAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFKDLGNMDQTPVQYEMPVETTLEKTGAKDARIATGAGVCCIRTILKPLPYPPTSCILPPPPGKEKERFTLCLAVSADGTKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAH 428          
BLAST of mRNA_H-elongata_contig187379.5111.1 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE)

HSP 1 Score: 299 bits (765), Expect = 1.070e-90
Identity = 158/250 (63.20%), Postives = 188/250 (75.20%), Query Frame = 1
Query:    1 IAFGTVKKLRKALLEHAGKIFVERNPRASDELPVNGEELSSEQLESVTAEVFQELGNMDQTPVQHEMPVARKMPASAREVKVLRLR---KEKERFNLCLAVMADDSKVSLRIIFKDTPFKPPNKQWKGKKTQPRKGSIAAEVAPGNCTKFGHSAAGLSFGVQENSWCNARECTLWISESWRLRPINGRIITQRPSILVLDDFKCHRDEAFIANLRKRCNTSVILIPGGLTPLLQPQDRMLNKQMKRLLRG 741
            +AF T+ KLR ALLE AG+I+  RNP AS E P+ G++L+  QLESV A+VF+ELGNMDQTPVQ EMPV   +    R VK  R+    KEK+RF  CLAVMAD  KV  RIIFK  PF PP+   + K TQ RKG IAAEV   N TKFG+  +G+ F VQE SWC+ARECTLW+SESWR RP +G +I QR SILVLDDF+CHR E+F+ +LR+R NT+VILIPGGLTPLLQP DRMLNK+MKRL+RG
Sbjct:  132 LAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLTPAQLESVAAKVFEELGNMDQTPVQQEMPVETTL--EKRGVKDARISTGGKEKDRFTPCLAVMADGGKVPQRIIFKGKPFIPPSTAGREKNTQTRKGYIAAEVLLANRTKFGYPVSGMFFVVQEKSWCDARECTLWLSESWRFRPNHGSVIKQRHSILVLDDFRCHRSESFVKDLRRRTNTTVILIPGGLTPLLQPLDRMLNKEMKRLMRG 379          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig187379.5111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXD3_ECTSI2.810e-10462.85DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JUK2_9PHAE3.140e-10164.03DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE9.450e-10164.03DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRZ1_9PHAE4.540e-9963.71DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KII4_9PHAE2.160e-9763.71DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K8Y4_9PHAE5.720e-9563.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHT8_9PHAE1.620e-9362.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTG5_9PHAE1.790e-9361.30DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KE45_9PHAE7.390e-9357.35DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K583_9PHAE1.070e-9063.20Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig187379contigH-elongata_contig187379:161..1125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score313.2
Seed ortholog evalue1.1e-82
Seed eggNOG ortholog2880.D7FXD3
Preferred namePOGK
KEGG koko:K09228
EggNOG free text desc.DNA binding
EggNOG OGsKOG3105@1,KOG3105@2759
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Hectar predicted targeting categoryother localisation
Exons2
Model size756
Cds size756
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930070.8884797-CDS-H-elongata_contig187379:160..6601622930070.8884797-CDS-H-elongata_contig187379:160..660Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187379 161..660 -
1691679269.6880016-CDS-H-elongata_contig187379:160..6601691679269.6880016-CDS-H-elongata_contig187379:160..660Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187379 161..660 -
1622930070.899203-CDS-H-elongata_contig187379:869..11251622930070.899203-CDS-H-elongata_contig187379:869..1125Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187379 870..1125 -
1691679269.708305-CDS-H-elongata_contig187379:869..11251691679269.708305-CDS-H-elongata_contig187379:869..1125Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187379 870..1125 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig187379.5111.1prot_H-elongata_contig187379.5111.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig187379 161..1125 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig187379.5111.1

>prot_H-elongata_contig187379.5111.1 ID=prot_H-elongata_contig187379.5111.1|Name=mRNA_H-elongata_contig187379.5111.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=252bp
IAFGTVKKLRKALLEHAGKIFVERNPRASDELPVNGEELSSEQLESVTAE
VFQELGNMDQTPVQHEMPVARKMPASAREVKVLRLRKEKERFNLCLAVMA
DDSKVSLRIIFKDTPFKPPNKQWKGKKTQPRKGSIAAEVAPGNCTKFGHS
AAGLSFGVQENSWCNARECTLWISESWRLRPINGRIITQRPSILVLDDFK
CHRDEAFIANLRKRCNTSVILIPGGLTPLLQPQDRMLNKQMKRLLRGKYT
AY
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mRNA from alignment at H-elongata_contig187379:161..1125-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig187379.5111.1 ID=mRNA_H-elongata_contig187379.5111.1|Name=mRNA_H-elongata_contig187379.5111.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=965bp|location=Sequence derived from alignment at H-elongata_contig187379:161..1125- (Himanthalia elongata Himel1 dioecious)
ATAGCGTTTGGAACAGTGAAGAAGCTTCGGAAGGCTCTCCTGGAGCATGC TGGCAAAATTTTCGTAGAGCGCAACCCTCGTGCTTCTGATGAGCTTCCCG TGAACGGGGAGGAGCTGAGTTCCGAGCAGCTGGAGTCGGTGACGGCGGAA GTTTTTCAAGAACTCGGCAATATGGACCAGACGCCCGTCCAGCACGAGAT GCCGGTGGCGCGAAAGATGCCCGCATCAGCACGGGAGGTGAAAGTATTGA GGCTGCGTGCTTGTCGATAGTATGTGTTTTTTATCGTTTTAATGTTTTTA TTGTACGGTTGCTGCTGCTGCTGCTGCCACAACGCGATTTTTTTTCTCTA GATAATAGGTATTTTTGGGACCGTAAAATACCCCCGCATCGTGAATACGA AGTATAAATCACAACATGCAACTGTAACCCCCTCCCGCCCTCTCTTCGTG TCGACTCCCCCATAGGCAAGGAGAAAGAGCGCTTCAATCTCTGTCTTGCT GTCATGGCGGACGACAGCAAGGTTTCGCTACGCATAATCTTCAAAGACAC GCCGTTCAAGCCGCCGAACAAGCAGTGGAAAGGCAAGAAAACTCAGCCGC GAAAGGGGTCCATCGCAGCAGAGGTTGCGCCTGGAAATTGTACCAAGTTC GGACACTCCGCAGCGGGCTTGTCGTTTGGTGTGCAGGAGAATAGCTGGTG TAACGCGCGGGAGTGCACCCTTTGGATCTCGGAGAGCTGGAGGCTTCGCC CCATCAACGGACGCATCATCACGCAGCGCCCGAGCATCCTGGTGTTGGAC GACTTCAAGTGCCACCGTGACGAGGCCTTCATCGCTAACCTCCGAAAGAG GTGCAACACCAGCGTCATCCTGATCCCGGGCGGGTTGACTCCTCTCCTCC AGCCGCAGGACCGCATGCTCAACAAGCAGATGAAGCGGCTACTGCGGGGG AAGTACACCGCCTAC
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Coding sequence (CDS) from alignment at H-elongata_contig187379:161..1125-

>mRNA_H-elongata_contig187379.5111.1 ID=mRNA_H-elongata_contig187379.5111.1|Name=mRNA_H-elongata_contig187379.5111.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1512bp|location=Sequence derived from alignment at H-elongata_contig187379:161..1125- (Himanthalia elongata Himel1 dioecious)
ATAGCGTTTGGAACAGTGAAGAAGCTTCGGAAGGCTCTCCTGGAGCATGC
TGGCAAAATTTTCGTAGAGCGCAACCCTCGTGCTTCTGATGAGCTTCCCG
TGAACGGGGAGGAGCTGAGTTCCGAGCAGCTGGAGTCGGTGACGGCGGAA
GTTTTTCAAGAACTCGGCAATATGGACCAGACGCCCGTCCAGCACGAGAT
GCCGGTGGCGCGAAAGATGCCCGCATCAGCACGGGAGGTGAAAGTATTGA
GGCTGCATAGCGTTTGGAACAGTGAAGAAGCTTCGGAAGGCTCTCCTGGA
GCATGCTGGCAAAATTTTCGTAGAGCGCAACCCTCGTGCTTCTGATGAGC
TTCCCGTGAACGGGGAGGAGCTGAGTTCCGAGCAGCTGGAGTCGGTGACG
GCGGAAGTTTTTCAAGAACTCGGCAATATGGACCAGACGCCCGTCCAGCA
CGAGATGCCGGTGGCGCGAAAGATGCCCGCATCAGCACGGGAGGTGAAAG
TATTGAGGCTGCGCAAGGAGAAAGAGCGCTTCAATCTCTGTCTTGCTGTC
ATGGCGGACGACAGCAAGGTTTCGCTACGCATAATCTTCAAAGACACGCC
GTTCAAGCCGCCGAACAAGCAGTGGAAAGGCAAGAAAACTCAGCCGCGAA
AGGGGTCCATCGCAGCAGAGGTTGCGCCTGGAAATTGTACCAAGTTCGGA
CACTCCGCAGCGGGCTTGTCGTTTGGTGTGCAGGAGAATAGCTGGTGTAA
CGCGCGGGAGTGCACCCTTTGGATCTCGGAGAGCTGGAGGCTTCGCCCCA
TCAACGGACGCATCATCACGCAGCGCCCGAGCATCCTGGTGTTGGACGAC
TTCAAGTGCCACCGTGACGAGGCCTTCATCGCTAACCTCCGAAAGAGGTG
CAACACCAGCGTCATCCTGATCCCGGGCGGGTTGACTCCTCTCCTCCAGC
CGCAGGACCGCATGCTCAACAAGCAGATGAAGCGGCTACTGCGGGGGAAG
TACACCGCCTACGCAAGGAGAAAGAGCGCTTCAATCTCTGTCTTGCTGTC
ATGGCGGACGACAGCAAGGTTTCGCTACGCATAATCTTCAAAGACACGCC
GTTCAAGCCGCCGAACAAGCAGTGGAAAGGCAAGAAAACTCAGCCGCGAA
AGGGGTCCATCGCAGCAGAGGTTGCGCCTGGAAATTGTACCAAGTTCGGA
CACTCCGCAGCGGGCTTGTCGTTTGGTGTGCAGGAGAATAGCTGGTGTAA
CGCGCGGGAGTGCACCCTTTGGATCTCGGAGAGCTGGAGGCTTCGCCCCA
TCAACGGACGCATCATCACGCAGCGCCCGAGCATCCTGGTGTTGGACGAC
TTCAAGTGCCACCGTGACGAGGCCTTCATCGCTAACCTCCGAAAGAGGTG
CAACACCAGCGTCATCCTGATCCCGGGCGGGTTGACTCCTCTCCTCCAGC
CGCAGGACCGCATGCTCAACAAGCAGATGAAGCGGCTACTGCGGGGGAAG
TACACCGCCTAC
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