mRNA_H-elongata_contig1873.5105.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1873.5105.1
Unique NamemRNA_H-elongata_contig1873.5105.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig1873.5105.1 vs. uniprot
Match: D7G884_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G884_ECTSI)

HSP 1 Score: 421 bits (1082), Expect = 3.640e-137
Identity = 315/633 (49.76%), Postives = 376/633 (59.40%), Query Frame = 1 
Query:    1 GIMSKLKKLQKERLIVARLGFPDKAMEIDGVIEKIRADLRKERQKKDAKILDLALGKLAMEHRRKLTELEIELERDAKSKREAFRREKNILLRKQESQFARLVDDAIKRAIGKSKSCSCSKTYLCHHNKTASFNTRRPKKEVLHFRKNAKRLRHGGRLEESTAWEEKAAELDAEHLDKWREKVAASLSASAWGGSSSALDQLASQHEREVRRMETAQANERTLMLMRHHTLRRNCDNVIMVEQKKLRTACKKDAEERHRREMLRAQADIEEGTPTRRQKWPASAGSDRCAIEDKLEDYINREELVEAVGRSPVRPRSAPPVRGKRPQL--------NARGEDTVAAEGAR----GDG-NRGGGNEN---EDHDSTGGSSRDLEGFGELEGA----FSYDDYPVAGSLGEPEWVHVPWLGSDS----CCSAGADRRISDT----------PTTT---PPFS--GIKDGAITEE----GGNISDDQG-GEGGVVALENEGGRDVVGVNNMGWLEWSGYSASEARLAAAAELEKSSEL-TGSAVGTNTPAIISAREGREDRTPLSTGVAAGGGKRSREKGSVSPG----RNGEGGEDLKRYDW-DINKVPERPSLLVTSRIPSGSRINKTKARKAR 1749
            GIM+KLKKLQKERLIVARLGFPDKAMEID  IEKIRADLR ER+K D++IL+  L  LA++HR KL  LE EL+ D +    +F RE+ +LLRKQE QF +LVDDAIKRAIGKSK       YLCHHNKTASFNTRRPKKEV+HFRKNAKRLRHGGRL+ES AWEEKAAELDA HLD WRE+VAASL+ASAWGGSSSALDQLA++H+RE+ RMETAQAN  TLMLMRH T RRNC NVIMVE+KK       D E      MLR   + +EG+ T   +   +  S   A                  GR P RP SAPP RGKRPQ         N    +TVAA  +     G+G N G  +E    +D DS G  S DL GF ELEG     FSYDDYP AGS  EPEW+H PW G++S         +D+++ D+          P +T   PP S  G  DG    +    GG  S+  G GE   V  E++  RDV           S  S +E           + EL TG A    +P +  A EG E  + +       GG   R  GSV  G    R   GG +L+RY+W   +  P +PSLL TSRIP+G+R +K + R A+
Sbjct:    2 GIMAKLKKLQKERLIVARLGFPDKAMEIDEHIEKIRADLRSEREKVDSRILEEELAALAIQHREKLASLEQELKEDEQKVSRSFERERAVLLRKQEKQFVQLVDDAIKRAIGKSKK------YLCHHNKTASFNTRRPKKEVIHFRKNAKRLRHGGRLDESAAWEEKAAELDANHLDSWREEVAASLTASAWGGSSSALDQLATEHQREISRMETAQANGWTLMLMRHQTARRNCHNVIMVERKK-------DVEG-----MLRNVIE-DEGSATGEAEGKEAQPSGGTAA-----------------GRPPTRPSSAPPARGKRPQPAAATTKNNNQNLSETVAAPPSATEKAGEGENVGAADEGVHVDDDDSFGKDSHDLRGFDELEGEAWKKFSYDDYPAAGSPEEPEWIHTPWCGTNSGDIPVLDKVSDKKVLDSDGTPMVQLVLPASTASAPPSSSAGRVDGNTATQPVVRGGGASEGFGDGEDKGVIAEHK--RDVG----------SPRSGAEGGADKGRPCSATGELFTGDAAAAVSP-LSFAGEGAERDSQVD------GGGSGRSPGSVGDGFTSPRALAGGGELRRYNWLGADAAPTKPSLLTTSRIPTGNRADKQRFRNAK 579
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BLAST of mRNA_H-elongata_contig1873.5105.1 vs. uniprot
Match: A0A836CD74_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD74_9STRA)

HSP 1 Score: 260 bits (665), Expect = 1.700e-78
Identity = 143/244 (58.61%), Postives = 181/244 (74.18%), Query Frame = 1 
Query:    7 MSKLKKLQKERLIVARLGFPDKAMEIDGVIEKIRADLRKERQKKDAKILDLALGKLAMEHRRKLTELEIELERDAKSKREAFRREKNILLRKQESQFARLVDDAIKRAIGKSKSCSCSKTYLCHHNKTASFNTRRPKKEVLHFRKNAKRLRHGGRLEESTAWEEKAAELDAEHLDKWREKVAASLSASAWGGSSSALDQLASQHEREVRRMETAQANERTLMLMRHHTLRRNCDNVIMVEQKKL 738
            MSKLKKLQKERLIVARLGFP+KAMEID +++KIR DL+ ER  +D ++L + L +L   H  +   LE  +  + +  R  F  E+  L +K +S+F  LV  A KRAIG+SKSCSC+K YLC HNKTAS+NTRRPKK+V+H+R+NA RL+HGGRLEE+ AWEEKAAELDA HL++WRE VA SL+ASAWGGSSSALD L  +H+ E+ ++E  Q+N   LM M H  LRRN  N + VE KK+
Sbjct:   77 MSKLKKLQKERLIVARLGFPEKAMEIDEMVQKIRDDLKTERAAEDERVLMVELERLQEAHAARAEALEQRIGEEEQQMRGKFCEEQRRLRKKHDSEFLDLVTAATKRAIGRSKSCSCTKKYLCTHNKTASYNTRRPKKDVIHYRRNASRLKHGGRLEEAKAWEEKAAELDARHLEQWREHVARSLAASAWGGSSSALDHLGERHQHELEQLEVGQSNRWRLMTMHHAVLRRNLGNTMAVEVKKV 320
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BLAST of mRNA_H-elongata_contig1873.5105.1 vs. uniprot
Match: A0A6C0BWQ3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0BWQ3_9ZZZZ)

HSP 1 Score: 141 bits (355), Expect = 1.680e-32
Identity = 84/250 (33.60%), Postives = 146/250 (58.40%), Query Frame = 1 
Query:    7 MSKLKKLQKERLIVARLGFPDKAMEIDGVIEKIRADLRKERQKKDAKILDLALGKLAMEHRRKLTELEIELERDAKSKREAFRREKNILLRKQESQFARLVDDAIKRAIGKSKSCSCSKTYLCHHNKTASFNTRRPKKEVLHFRKNAKRLRHGGRLEESTAWEEKAAELDAEHLDKWREKVAASLSASAWGGSSSALDQLASQHEREVRRMETAQANERTLMLMRHHTLRRNCDNVIMVEQKKLRTACKK 756
            +S LKKLQKERLI++RLGF +KA  +D  IE +R   +  R+ ++ K++   L  L  ++ RK   L+  ++++               + K  ++F +++++A +++IGK KSC+C   YLCHHNKT+S+N R+PK  V+ +RKN+KRL+ GGR E++   EEKA E+D E   +W++ +A S+  S W  +   +D+    H++E+  ME     +R     R    +    N ++ ++++L+   K+
Sbjct:   73 ISALKKLQKERLIISRLGFAEKAYALDKQIEVMREKAKVVRKAEEEKLMAEMLETLHKKNERKQQRLDAVIKQEHDEXXXXXXXXXXXXIEKHRTEFLKIIENAERKSIGKIKSCNCENDYLCHHNKTSSWNIRKPKPIVILYRKNSKRLKQGGRTEDAIQIEEKADEIDYESQIEWKKNIATSIVQSPWNANEPIIDRTIENHKKELETMEKTHEFKRNAFKERCSRRKFALHNNLITDERRLKIKAKR 322
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BLAST of mRNA_H-elongata_contig1873.5105.1 vs. uniprot
Match: A0A836CAU2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAU2_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.900e-32
Identity = 94/270 (34.81%), Postives = 153/270 (56.67%), Query Frame = 1 
Query:   16 LKKLQKERLIVARLGFPDKAMEIDGVIEKIRADLRKERQKKDAKILDLALGKL-------AMEHRRKLTELEIELERDAKSKREAFRREKNILLRKQESQFARLVDDAIKRAIGKSKSCSCSKTYLCHHNKTASFNTRRPKKEVLHFRKNAKRLRHGGRLEESTAWEEKAAELDAEHLDKWREKVAASLSASAWGGSSSALDQLASQHEREVRRMETAQANERTLMLMRHHTLRRNCDNVIMVEQKKLRTACKKDAEERHRREMLRAQAD 804
            +++LQ ERL +AR+GF DKA E++ VIE+ R  + KER++++  IL   L  L       AM HRR+L  LE  L R+ +       +E +    K   ++  L+++  +RA G   SC C K YLC HNKTAS+NTR+P ++V+  R+NA+RLR  GR+EE+  ++ +A  +D +    WR +V  S+ +SAW G  S L+QL  + + ++R +E     +  L+  +              E+KK+   C++ A +R  R+ ++ +AD
Sbjct:   33 IRELQMERLAMARMGFLDKAKEVENVIERERVTMLKEREEREQSILSQKLSSLGKYHHAKAMGHRRRLVALESRLTRELQQFLGKCAKELSDTKDKHRREYEALIEETAQRAYGGVSSCQCRKRYLCRHNKTASYNTRKPTRDVISLRQNAERLRATGRIEEAEEFDRQAQAIDDKADKDWRTRVEQSIVSSAWSGGKSRLEQLVERQQHQLRSVEETHEAKLELVKKQQEIXXXXXXXXXXXERKKVIMYCRRAALKRMTRD-IKEEAD 301
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BLAST of mRNA_H-elongata_contig1873.5105.1 vs. uniprot
Match: A0A6H5JNT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNT6_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 1.320e-31
Identity = 115/334 (34.43%), Postives = 171/334 (51.20%), Query Frame = 1 
Query:   16 LKKLQKERLIVARLGFPDKAMEIDGVIEKIRADLRKERQKKDAKILDLALGKLAMEHRRKLTELEIELERDAKSKREAFRREKNILLRKQESQFARLVDDAIKRAIGKSKSCSCSKTYLCHHNKTASFNTRRPKKEVLHFRKNAKRLRHGGRLEESTAWEEKAAELDAEHLDKWREKVAASLS--------------ASAWGGSSSALDQLASQHEREVRRMETAQANERTLMLMRHHTLRRNCDNVIMVEQKKLRTACKKDAEERHRREMLRAQADIEEGTPTRRQKWPASAGSDRCAIEDKLEDYIN---REELV--EAVGRSPVRPRSAPP 960
            L++LQ ERL +AR+GF DKA E++  IE  R   +KER++K+  IL   LG L + HRR+   LE +        R         L  K + ++  L+++  +RA G   SC C KTYLC HNKTAS+NTR+P +EV+  R+NA+RLR  GR+EE+  +E +A +LD     +WR +V                    SAW G  S L+QL  + +  V+ +E     +  L++ +    RRN  +    E+KK+   C++ A +R  R+ ++  AD E  T   +     S G D   + +  +  I+   RE LV   A GR      SAPP
Sbjct:   79 LRELQMERLAMARMGFLDKAREVEVWIESERLKTQKEREEKEQAILAQKLGGLDISHRRRFIGLENKQGEGEAQFRAKXXXXXXELRLKHKREYDMLIEETAQRAYGGVSSCQCEKTYLCRHNKTASYNTRKPTREVIRLRQNAERLRATGRVEEAEEFEIQAQDLDDACDKQWRTRVEQRAKPYACSFLHRTSLWRTSAWSGGKSRLEQLVEKQQHTVKSLEETHEAKYELLVKQQDIQRRNLKSTFEAERKKVAMYCRRAALKRMTRD-IKEDADEERRTMANK-----SDGMDNVFLGNARQGAIHTSIRELLVYLSAEGREHDELASAPP 406
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BLAST of mRNA_H-elongata_contig1873.5105.1 vs. uniprot
Match: D8LM25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM25_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 2.260e-26
Identity = 82/247 (33.20%), Postives = 137/247 (55.47%), Query Frame = 1 
Query:   46 VARLGFPDKAMEIDGVIEKIRADLRKERQKKDAKILDLALGKLAMEHRRKLTELEIELERDAKSKREAFRREKNILLRKQESQFARLVDDAIKRAIGKSKSCSCSKTYLCHHNKTASFNTRRPKKEVLHFRKNAKRLRHGGRLEESTAWEEKAAELDAEHLDKWREKVAASLSASAWGGSSSALDQLASQHEREVRRMETAQANERTLMLMRHHTLRRNCDNVIMVEQKKLRTACKKDAEERHRREM 786
            +AR+GF DKA E+D ++E  RA L+KER ++D  +LD  +  L M H R+   +    E    S  E    E   L  KQ+ ++  LV +   RA G   SC C+  + C HNK+AS+NTR+P K+V+  R+N +RLR  GRL E+   +  A  ++    D+WR++V  S+ +SAW G  S L+Q+  + +  +R + +    +   +  +    RRN  + +  E+KK+   C+++A +R  +++
Sbjct:    1 MARMGFLDKAEELDVMVEAERARLKKERDQQDQAVLDQKMNGLRMSHTRRSAAMTSAHEARIASLLEKCATEIEDLKVKQKKEYDVLVGETATRATGGVSSCVCTDPFKCRHNKSASYNTRKPTKDVIRLRQNGQRLRASGRLAEADEVDNMAVAIEKLAEDQWRKRVEESILSSAWCGGKSRLEQMVERQQATLRALMSTHTEKLARLKQQDRLERRNLVSTLAAERKKVILYCRREATKRRTKDI 247
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BLAST of mRNA_H-elongata_contig1873.5105.1 vs. uniprot
Match: A0A835Z9J4_9STRA (SWIM-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9J4_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.380e-12
Identity = 56/183 (30.60%), Postives = 86/183 (46.99%), Query Frame = 1 
Query:  280 KQESQFARLVDDAIKRAIGKSKSCSCSKTYLCHHNKTASFNTRRPKKEVLHFRKNAKRLRHGGRLEESTA--------------------------------WEEKAAELDAEHLDKWREKVAASLSASAWGGSSSALDQLASQHEREVRRMETAQANERTLMLMRHHTLRRNCDNVIMVEQK 732
            KQ+ Q+  LV +   RA G   SC+C+  Y C HNK+AS++TR+P ++V+  R+NA+RLR  GR EE+ +                                 E KAA+ +      WR +V A++ +SAW G  S L+Q+  + +  V  +E        L    H  LRRN    +  E++
Sbjct:  300 KQKRQYELLVGETATRATGGISSCTCADAYACRHNKSASYSTRKPTRDVIRLRQNAQRLRASGRQEEAESRGRRGLGGSEAPECARAAGERKCGGAHLLACEMENKAADAERAAEAAWRARVEAAIVSSAWAGGKSRLEQMVERQQAVVAALEETHGERAALARKNHGILRRNLLATLNAERR 482
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BLAST of mRNA_H-elongata_contig1873.5105.1 vs. uniprot
Match: A0A6H5KND4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KND4_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 7.550e-8
Identity = 59/229 (25.76%), Postives = 101/229 (44.10%), Query Frame = 1 
Query:  307 VDDAIKRAIGKSKSCSCSKTYLCHHNKTASFNTRRPKKEVLHFRKNAKRLRHG---------------------GRLEESTAWEEKAAELDAEHLDKWREKVAASLSASAWGGSSSALDQLASQHEREVRRMETAQANERTLML----MRHHTLRRNCDNVIMVEQKKLRTACKKDAEERHRREMLR----AQADIEEGTPTRRQKW--PASAGSDRCAIEDKLEDYIN 900
            V +   RA G   SC C+  + C HNK+AS+NTR+P K+V+  R+N  R RH                      GRL E+   +  A  ++    ++WR++V  S+ +SAW G  S L+Q+  + +  ++ + +    +   +     +R  T RR  D     ++ +   A K D  +   + M +    +Q+DI+     R + W  P + G D        ED  +
Sbjct:   60 VGETATRATGGVSSCVCTDPFKCRHNKSASYNTRKPTKDVIRLRQNVSRPRHSPAEPPLMWLFFVSRGQRLRASGRLAEADEVDNMAVAIEKLAEEQWRKRVEESILSSAWCGGKSRLEQMVERQQATLQALMSTHTEKLARLKQQDRLREATKRRTKDIAAGAKEARKLNAHKSDGMQNVSKNMFKDSDDSQSDID-SEDDRLEGWKPPTACGVDNSKALSSYEDIAS 287
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1873.5105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G884_ECTSI3.640e-13749.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CD74_9STRA1.700e-7858.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6C0BWQ3_9ZZZZ1.680e-3233.60Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A836CAU2_9STRA1.900e-3234.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JNT6_9PHAE1.320e-3134.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LM25_ECTSI2.260e-2633.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z9J4_9STRA1.380e-1230.60SWIM-type domain-containing protein n=1 Tax=Tribon... [more]
A0A6H5KND4_9PHAE7.550e-825.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1873contigH-elongata_contig1873:8261..13234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_010640.1
Exons8
Model size1803
Cds size1797
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930070.2373204-CDS-H-elongata_contig1873:8260..92141622930070.2373204-CDS-H-elongata_contig1873:8260..9214Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1873 8261..9214 -
1691679269.3840358-CDS-H-elongata_contig1873:8260..92141691679269.3840358-CDS-H-elongata_contig1873:8260..9214Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1873 8261..9214 -
1622930070.2504518-CDS-H-elongata_contig1873:9850..99641622930070.2504518-CDS-H-elongata_contig1873:9850..9964Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1873 9851..9964 -
1691679269.3921409-CDS-H-elongata_contig1873:9850..99641691679269.3921409-CDS-H-elongata_contig1873:9850..9964Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1873 9851..9964 -
1622930070.2644656-CDS-H-elongata_contig1873:10487..106191622930070.2644656-CDS-H-elongata_contig1873:10487..10619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1873 10488..10619 -
1691679269.4048219-CDS-H-elongata_contig1873:10487..106191691679269.4048219-CDS-H-elongata_contig1873:10487..10619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1873 10488..10619 -
1622930070.2814145-CDS-H-elongata_contig1873:10982..110991622930070.2814145-CDS-H-elongata_contig1873:10982..11099Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1873 10983..11099 -
1691679269.4205465-CDS-H-elongata_contig1873:10982..110991691679269.4205465-CDS-H-elongata_contig1873:10982..11099Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1873 10983..11099 -
1622930070.2965236-CDS-H-elongata_contig1873:11738..118791622930070.2965236-CDS-H-elongata_contig1873:11738..11879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1873 11739..11879 -
1691679269.4294417-CDS-H-elongata_contig1873:11738..118791691679269.4294417-CDS-H-elongata_contig1873:11738..11879Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1873 11739..11879 -
1622930070.312922-CDS-H-elongata_contig1873:12162..122431622930070.312922-CDS-H-elongata_contig1873:12162..12243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1873 12163..12243 -
1691679269.437134-CDS-H-elongata_contig1873:12162..122431691679269.437134-CDS-H-elongata_contig1873:12162..12243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1873 12163..12243 -
1622930070.3397481-CDS-H-elongata_contig1873:12596..127401622930070.3397481-CDS-H-elongata_contig1873:12596..12740Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1873 12597..12740 -
1691679269.4452925-CDS-H-elongata_contig1873:12596..127401691679269.4452925-CDS-H-elongata_contig1873:12596..12740Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1873 12597..12740 -
1622930070.3542538-CDS-H-elongata_contig1873:13114..132281622930070.3542538-CDS-H-elongata_contig1873:13114..13228Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1873 13115..13228 -
1691679269.4590418-CDS-H-elongata_contig1873:13114..132281691679269.4590418-CDS-H-elongata_contig1873:13114..13228Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1873 13115..13228 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930070.3712964-UTR-H-elongata_contig1873:13228..132341622930070.3712964-UTR-H-elongata_contig1873:13228..13234Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1873 13229..13234 -
1691679269.468825-UTR-H-elongata_contig1873:13228..132341691679269.468825-UTR-H-elongata_contig1873:13228..13234Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1873 13229..13234 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1873.5105.1prot_H-elongata_contig1873.5105.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1873 8261..13228 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1873.5105.1

>prot_H-elongata_contig1873.5105.1 ID=prot_H-elongata_contig1873.5105.1|Name=mRNA_H-elongata_contig1873.5105.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=599bp
MSKLKKLQKERLIVARLGFPDKAMEIDGVIEKIRADLRKERQKKDAKILD
LALGKLAMEHRRKLTELEIELERDAKSKREAFRREKNILLRKQESQFARL
VDDAIKRAIGKSKSCSCSKTYLCHHNKTASFNTRRPKKEVLHFRKNAKRL
RHGGRLEESTAWEEKAAELDAEHLDKWREKVAASLSASAWGGSSSALDQL
ASQHEREVRRMETAQANERTLMLMRHHTLRRNCDNVIMVEQKKLRTACKK
DAEERHRREMLRAQADIEEGTPTRRQKWPASAGSDRCAIEDKLEDYINRE
ELVEAVGRSPVRPRSAPPVRGKRPQLNARGEDTVAAEGARGDGNRGGGNE
NEDHDSTGGSSRDLEGFGELEGAFSYDDYPVAGSLGEPEWVHVPWLGSDS
CCSAGADRRISDTPTTTPPFSGIKDGAITEEGGNISDDQGGEGGVVALEN
EGGRDVVGVNNMGWLEWSGYSASEARLAAAAELEKSSELTGSAVGTNTPA
IISAREGREDRTPLSTGVAAGGGKRSREKGSVSPGRNGEGGEDLKRYDWD
INKVPERPSLLVTSRIPSGSRINKTKARKARNNNPGGKKVTVVCYGSV*
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mRNA from alignment at H-elongata_contig1873:8261..13234-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1873.5105.1 ID=mRNA_H-elongata_contig1873.5105.1|Name=mRNA_H-elongata_contig1873.5105.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4974bp|location=Sequence derived from alignment at H-elongata_contig1873:8261..13234- (Himanthalia elongata Himel1 dioecious)
GGGATCATGTCAAAGCTCAAGAAGCTTCAAAAGGAGAGGTTGATCGTTGC
TAGGCTTGGCTTCCCCGATAAGGCCATGGAGATCGATGGGGTGATCGAAA
AAATTCGAGCTGACCTCCGCGTGAGTTCTCCTTGATGAACAGCGTGTTTG
GGGCGGCAAGTAAGGTCCCACCTGACTGGTTGGTGAAGGATGTTAATTTA
GTCTTACTATGGGGCATTGTTATACGGTCCTCGAGCGTGTGGTTAACGAC
GAATAAATCCATTCATTACAATTCGCACGTGTATTAAACATTATCAACAG
TATGTTTTCGCACAACTGTACTCCAACGATCGAGGCTCCATCACGACGAC
TTCACACCGCGCTCAAATCTACCCCAGCTCCAAGTGGCCGAATGCAGTGA
TAGTATATCTCGGTGTGCATCGTTGTTTATGTGGTATGGTGTTACTTTAT
CCGGCGCATCATATACGTTTCATGTTACGTCCTGTACCACGCAGAAGGAG
CGCCAGAAAAAAGACGCTAAGATCCTTGATCTTGCCCTCGGAAAATTGGC
TATGGAGCACCGCCGTAAGCTGACCGAACTCGAGATCGAACTCGAGAGAG
ATGCGAAGAGTAAGAGGGAGGCTTTTCGGCGGGAGAAGGTGCGGTGAAAG
AATCGAATGACACGCAAATATTAACGTTGGGACGTGAAGTGTTATGCTGC
AACGACTTTCAGTGTTTGGAATGTAGAAAGCAAGCGAGAGCAGATGTAGG
TATTGTGCGGAATGTGTGAGGTTGATGATGGATAATGTTTTGCTTCCCTT
TCTACGGGAGACGCATTCAAGTGTATGCACACACACATGATGCTCCGCGT
CATCGCGGTCCTATCAGTGCAACGCTCAATCGTCGATAATGGTTTTTGTA
GTTGCACATGCCATGGGTTGTCAGCACGACTCACGCGACGCGTCTGCATG
AATCGCCCCCCTATGGACTCCGTCGTGTTTCTGTTATAAAGAATATCCTC
TTAAGAAAGCAGGAGAGCCAGTTCGCGCGGCTTGTGGACGATGCGATCAA
GCGAGCTATAGGCAAGAGTAAAGTGAGCGCGGGTTGTGATGCATGAAGCC
CATGTATGTATTACATATATATATATATATATATATGTCTTAGCGAGAAA
ATAAAGACTCTCGCTTCCATTCCACGCACGATCTTTGACTCGGCCAGAAG
AAAATCTAGGCAAACGTGAACTCGACAAACACGGTAGTGGTAACTCTAAA
AACGAATCGAAAACTTCCTCCGACGATCTTTCTGTGCTCTACGCTACTCC
TCCTTCTCGCCGAAATTTTGACTCGTTGGTCGATCGCCGTTTCTTCGTTG
CGCAGTCTTGTTCCTGCTCGAAAACATATCTGTGTCACCACAACAAGACG
GCCAGTTTCAACACACGCAGGCCTAAGAAAGAAGTACTCCACTTCAGGAA
GAATGCAAAGCGTCTTCGTCACGGTGGAAGACTGGAAGAGTCTACGGTGA
GTTAGCTCTAGGATGTTTCTATCGTCTCTTTTGAGAACATTCCTGCCCGG
TACCAGTGTATTTGCCTCTGTTTCGTTTTGCTAATCGCTATGCGCGCGCA
ATCACTTATTGTCAGGTAGCTTATATTTCAAGTCGTGTGGTTCTTTGACC
TTCATGCGATTTGTAGATTACTAAGTCCATGGTGTAGGGGGGAAAGGCTT
CTGCTCGCAACATCAATGATGTGATTTGCTTCAGTCCGCAACGCTCGTCC
CCCGAAAAAATGAGGCCCCCTCTGATGCACCCTACGATATTTAGCTTTCG
GATAGCTAGGATGTTTCTACCGTCCCTTTTGAGAGCATTCCTGTGCGGTA
CCAGTGTATTTGCCTCTGTTTCGTTTTGCTAATCGCTATGCACGCGCAAT
CACTTATTGTCAGGTAGCTTATATTTCAAGTCGTGTGGTCCTTTGACCTT
CATGCGATTTGTAGATTACTAAGTCCATGGTGTAGGGGGGAAAGACTTCT
GCTCGCAATATCAATGATGTGATTTGCTTCAGCCCGCAACGCTCGTCCCC
CGAAAAAACGAGGCCCCCTCTGATGCACCCTACGATATTAAGCTTTCGGA
TAGCAATCGAATCGCTTTTCTCCTACTTTTCTTAGGCGTGGGAGGAGAAA
GCAGCCGAGCTGGATGCAGAACACCTCGACAAGTGGCGAGAGAAAGTTGC
CGCTAGCCTGTCAGCGAGTGCGTGGGGGGGGAGTAGCTCAGCTCTTGATC
AAGTGAGCAAGGCAGCGTCATTGAGGATGAGTATCCACTCCCTGTGATTC
GTACAAATCGTCCGTGCGAAAATAGTTCGAGGTGTTTACACCACTTCCTA
GATGCACTAGTGACTGGACAGTTGGTCAGTGAGTATCGCAGAGTAAATGC
CGAATGTCACTGACAACTTCGCGTGAGCGTCGAAGCGCTTCACAGTCTGT
CGCGCCAAAAATTCCGCGAAGCAAGTTATTCCCACGAAAGTCTTGTGTTT
TAGGAGCGCCCTCCTGTCTTCTCTCGTGCACCACCACAACAAGCTGTGAT
CGACGGTACAATAGCATCGACAAGCGCTATGGACCCCTTGGTGGAACCTT
TTGTCTATTTTCCAGCTCGCTTCTCAGCACGAGAGGGAGGTAAGGCGGAT
GGAGACGGCGCAGGCGAACGAAAGGACGCTCATGCTAATGCGCCATCACA
CCCTCCGTCGGAACTGCGATAACGTAATCATGGTGGAGCAGAAGAAGGTG
AGACATTCACATCTATAGAGGCAGAGATTCGGTAGCACGCGCACAAGTGC
GTGTCGCGTGAAAGTGGTAACATGTGAGGGACTGAATCCCACAACAGGGC
ACTGTGCGCCCTAATGGGTGCGCACTTTAGGCGGGTATTGATATCCTTCC
AGACCCCGTGCGACGCGGTGGTCGTCCAATCAAAAGCTACTGTTGCGCTT
CCCCCCACCCACCGAATATTACCGGTATTTTCCCGGGTCGGGGCGCGGGT
CCGTTCAGCTCACACCACCCGGCTATTTTGCAGAAGAAACTTCTGTATAT
TTTGTTTACCGTAGTATTCACCCCTTTGGCTGATTTTTCCCGCTCTTTAT
CCGCCCGATCTAGCCTTTCGCGACGTTTCGTAAGACCTCAGGGACACGCC
CGTGTCCTTGTTGATAGTTTTTTTTAGTTATTTCCATCGCCCTGCTTCAC
GTTTATAGCCGCGCTTTCATCGCACTTGGGCCGCCCACCCCCTGCCCCCA
TCCCTATCCCACTCGCTCAGCTCAGAACTGCATGCAAGAAGGACGCAGAG
GAACGTCATCGACGCGAAATGCTGCGGGCACAAGCCGACATCGAAGAGGG
AACGCCGACTCGTCGACAGAAATGGCCTGCGAGTGTAGGTACCCAGGCAA
GCGCTTTGGATGCCTGACCGGAGATATTTTTGGCCCACACCCTATCTTTA
TCCGTCTGTCTGGCCGAATCGCTTTGCTGACGCGACCACGGGTCACGTAC
GCTCGACCTTCGCTTGACTCTTGTGACAATCGTGATTAATTTTCCCTCCT
CACTCATTATGCCCTCTGATGGGCGAGCTGTAGTCCTCTATTTATTAAGA
GCACGCTCGCGTCGTGGAGGAAAATACTGCTAAATCGAGCGCTCCTGCCC
TCGGCACTGCGTTTGTTTATCGTCCGTGATTTCCGTTTCGTGTTTGAAAT
CAGGACGAAGACAATGAAGACGGCTGTGAAGACGGCAAGGCAAGCGCCGA
TCGTGAGGAGGCCCCAGAGACGCTCGTCGTTATATAATTCGTCTTTGACA
CAGAAGGCGCCAAAAATAAGCACGCGATTTTCCCTCTCCCCCCTCCGGCT
ACGTGTCTGCTGCATCCTAGAGCCCCATTTGTAAAAGAAGTCAGGGCTCC
ATCCTCTGTATGTAACACATTGTAAACTGTCTAAAGCGCGTTACCTGCCT
CTATTTGTGACGCTCTTTTATGTCGCTCCGACCGTTGTCATCATCGCGAA
AGATTCCACCAATAACGAAGGCTGGCTCCGATAGATGCGCTATCGAAGAC
AAACTAGAAGATTATATTAACAGGGAAGAACTCGTAGAAGCGGTCGGTCG
ATCGCCCGTGCGCCCGCGTAGCGCTCCGCCGGTCCGAGGAAAGAGACCGC
AGCTAAATGCGCGTGGGGAAGACACGGTAGCAGCAGAGGGGGCACGGGGT
GATGGAAACCGAGGTGGAGGCAACGAAAACGAGGACCACGATTCGACCGG
CGGTAGCTCGCGTGACCTAGAGGGGTTTGGCGAACTTGAAGGAGCATTCA
GCTACGATGACTACCCCGTGGCCGGGTCGCTGGGAGAGCCGGAGTGGGTC
CACGTGCCTTGGCTCGGGTCGGATAGCTGCTGTAGTGCTGGCGCCGACAG
ACGTATTTCGGACACCCCTACCACAACCCCGCCATTTTCCGGAATAAAAG
ATGGTGCCATCACCGAAGAAGGAGGAAACATAAGCGATGATCAAGGAGGG
GAAGGGGGAGTCGTGGCGCTCGAGAACGAAGGTGGCCGCGACGTCGTTGG
AGTCAACAATATGGGGTGGCTAGAATGGTCGGGATACTCCGCCAGCGAGG
CGCGACTCGCCGCGGCTGCTGAGCTCGAAAAGTCGTCCGAGTTAACCGGC
TCGGCAGTCGGTACAAATACACCGGCGATCATATCCGCTAGGGAAGGACG
TGAAGATCGCACGCCGTTGTCCACAGGAGTGGCAGCGGGAGGAGGAAAAA
GGTCGAGAGAAAAGGGAAGCGTGTCACCCGGGAGGAATGGGGAAGGAGGG
GAGGATCTGAAGCGGTACGATTGGGATATCAACAAGGTTCCAGAGCGGCC
TTCTCTGCTCGTGACCAGTCGGATACCGTCGGGTAGCCGTATCAATAAAA
CCAAGGCGAGGAAAGCGAGGAATAATAACCCTGGTGGAAAAAAGGTGACG
GTGGTGTGTTATGGGTCTGTCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig1873:8261..13234-

>mRNA_H-elongata_contig1873.5105.1 ID=mRNA_H-elongata_contig1873.5105.1|Name=mRNA_H-elongata_contig1873.5105.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3594bp|location=Sequence derived from alignment at H-elongata_contig1873:8261..13234- (Himanthalia elongata Himel1 dioecious)
ATGTCAAAGCTCAAGAAGCTTCAAAAGGAGAGGTTGATCGTTGCTAGGCT
TGGCTTCCCCGATAAGGCCATGGAGATCGATGGGGTGATCGAAAAAATTC
GAGCTGACCTCCGCATGTCAAAGCTCAAGAAGCTTCAAAAGGAGAGGTTG
ATCGTTGCTAGGCTTGGCTTCCCCGATAAGGCCATGGAGATCGATGGGGT
GATCGAAAAAATTCGAGCTGACCTCCGCAAGGAGCGCCAGAAAAAAGACG
CTAAGATCCTTGATCTTGCCCTCGGAAAATTGGCTATGGAGCACCGCCGT
AAGCTGACCGAACTCGAGATCGAACTCGAGAGAGATGCGAAGAGTAAGAG
GGAGGCTTTTCGGCGGGAGAAGAAGGAGCGCCAGAAAAAAGACGCTAAGA
TCCTTGATCTTGCCCTCGGAAAATTGGCTATGGAGCACCGCCGTAAGCTG
ACCGAACTCGAGATCGAACTCGAGAGAGATGCGAAGAGTAAGAGGGAGGC
TTTTCGGCGGGAGAAGAATATCCTCTTAAGAAAGCAGGAGAGCCAGTTCG
CGCGGCTTGTGGACGATGCGATCAAGCGAGCTATAGGCAAGAGTAAAAAT
ATCCTCTTAAGAAAGCAGGAGAGCCAGTTCGCGCGGCTTGTGGACGATGC
GATCAAGCGAGCTATAGGCAAGAGTAAATCTTGTTCCTGCTCGAAAACAT
ATCTGTGTCACCACAACAAGACGGCCAGTTTCAACACACGCAGGCCTAAG
AAAGAAGTACTCCACTTCAGGAAGAATGCAAAGCGTCTTCGTCACGGTGG
AAGACTGGAAGAGTCTACGTCTTGTTCCTGCTCGAAAACATATCTGTGTC
ACCACAACAAGACGGCCAGTTTCAACACACGCAGGCCTAAGAAAGAAGTA
CTCCACTTCAGGAAGAATGCAAAGCGTCTTCGTCACGGTGGAAGACTGGA
AGAGTCTACGGCGTGGGAGGAGAAAGCAGCCGAGCTGGATGCAGAACACC
TCGACAAGTGGCGAGAGAAAGTTGCCGCTAGCCTGTCAGCGAGTGCGTGG
GGGGGGAGTAGCTCAGCTCTTGATCAAGCGTGGGAGGAGAAAGCAGCCGA
GCTGGATGCAGAACACCTCGACAAGTGGCGAGAGAAAGTTGCCGCTAGCC
TGTCAGCGAGTGCGTGGGGGGGGAGTAGCTCAGCTCTTGATCAACTCGCT
TCTCAGCACGAGAGGGAGGTAAGGCGGATGGAGACGGCGCAGGCGAACGA
AAGGACGCTCATGCTAATGCGCCATCACACCCTCCGTCGGAACTGCGATA
ACGTAATCATGGTGGAGCAGAAGAAGCTCGCTTCTCAGCACGAGAGGGAG
GTAAGGCGGATGGAGACGGCGCAGGCGAACGAAAGGACGCTCATGCTAAT
GCGCCATCACACCCTCCGTCGGAACTGCGATAACGTAATCATGGTGGAGC
AGAAGAAGCTCAGAACTGCATGCAAGAAGGACGCAGAGGAACGTCATCGA
CGCGAAATGCTGCGGGCACAAGCCGACATCGAAGAGGGAACGCCGACTCG
TCGACAGAAATGGCCTGCGAGTCTCAGAACTGCATGCAAGAAGGACGCAG
AGGAACGTCATCGACGCGAAATGCTGCGGGCACAAGCCGACATCGAAGAG
GGAACGCCGACTCGTCGACAGAAATGGCCTGCGAGTGCTGGCTCCGATAG
ATGCGCTATCGAAGACAAACTAGAAGATTATATTAACAGGGAAGAACTCG
TAGAAGCGGTCGGTCGATCGCCCGTGCGCCCGCGTAGCGCTCCGCCGGTC
CGAGGAAAGAGACCGCAGCTAAATGCGCGTGGGGAAGACACGGTAGCAGC
AGAGGGGGCACGGGGTGATGGAAACCGAGGTGGAGGCAACGAAAACGAGG
ACCACGATTCGACCGGCGGTAGCTCGCGTGACCTAGAGGGGTTTGGCGAA
CTTGAAGGAGCATTCAGCTACGATGACTACCCCGTGGCCGGGTCGCTGGG
AGAGCCGGAGTGGGTCCACGTGCCTTGGCTCGGGTCGGATAGCTGCTGTA
GTGCTGGCGCCGACAGACGTATTTCGGACACCCCTACCACAACCCCGCCA
TTTTCCGGAATAAAAGATGGTGCCATCACCGAAGAAGGAGGAAACATAAG
CGATGATCAAGGAGGGGAAGGGGGAGTCGTGGCGCTCGAGAACGAAGGTG
GCCGCGACGTCGTTGGAGTCAACAATATGGGGTGGCTAGAATGGTCGGGA
TACTCCGCCAGCGAGGCGCGACTCGCCGCGGCTGCTGAGCTCGAAAAGTC
GTCCGAGTTAACCGGCTCGGCAGTCGGTACAAATACACCGGCGATCATAT
CCGCTAGGGAAGGACGTGAAGATCGCACGCCGTTGTCCACAGGAGTGGCA
GCGGGAGGAGGAAAAAGGTCGAGAGAAAAGGGAAGCGTGTCACCCGGGAG
GAATGGGGAAGGAGGGGAGGATCTGAAGCGGTACGATTGGGATATCAACA
AGGTTCCAGAGCGGCCTTCTCTGCTCGTGACCAGTCGGATACCGTCGGGT
AGCCGTATCAATAAAACCAAGGCGAGGAAAGCGAGGAATAATAACCCTGG
TGGAAAAAAGGTGACGGTGGTGTGTTATGGGTCTGTCTGAGCTGGCTCCG
ATAGATGCGCTATCGAAGACAAACTAGAAGATTATATTAACAGGGAAGAA
CTCGTAGAAGCGGTCGGTCGATCGCCCGTGCGCCCGCGTAGCGCTCCGCC
GGTCCGAGGAAAGAGACCGCAGCTAAATGCGCGTGGGGAAGACACGGTAG
CAGCAGAGGGGGCACGGGGTGATGGAAACCGAGGTGGAGGCAACGAAAAC
GAGGACCACGATTCGACCGGCGGTAGCTCGCGTGACCTAGAGGGGTTTGG
CGAACTTGAAGGAGCATTCAGCTACGATGACTACCCCGTGGCCGGGTCGC
TGGGAGAGCCGGAGTGGGTCCACGTGCCTTGGCTCGGGTCGGATAGCTGC
TGTAGTGCTGGCGCCGACAGACGTATTTCGGACACCCCTACCACAACCCC
GCCATTTTCCGGAATAAAAGATGGTGCCATCACCGAAGAAGGAGGAAACA
TAAGCGATGATCAAGGAGGGGAAGGGGGAGTCGTGGCGCTCGAGAACGAA
GGTGGCCGCGACGTCGTTGGAGTCAACAATATGGGGTGGCTAGAATGGTC
GGGATACTCCGCCAGCGAGGCGCGACTCGCCGCGGCTGCTGAGCTCGAAA
AGTCGTCCGAGTTAACCGGCTCGGCAGTCGGTACAAATACACCGGCGATC
ATATCCGCTAGGGAAGGACGTGAAGATCGCACGCCGTTGTCCACAGGAGT
GGCAGCGGGAGGAGGAAAAAGGTCGAGAGAAAAGGGAAGCGTGTCACCCG
GGAGGAATGGGGAAGGAGGGGAGGATCTGAAGCGGTACGATTGGGATATC
AACAAGGTTCCAGAGCGGCCTTCTCTGCTCGTGACCAGTCGGATACCGTC
GGGTAGCCGTATCAATAAAACCAAGGCGAGGAAAGCGAGGAATAATAACC
CTGGTGGAAAAAAGGTGACGGTGGTGTGTTATGGGTCTGTCTGA
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