mRNA_H-elongata_contig106255.510.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig106255.510.1 vs. uniprot
Match: A0A4Y9ZVS1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZVS1_9AGAM) HSP 1 Score: 127 bits (320), Expect = 1.920e-31 Identity = 67/161 (41.61%), Postives = 96/161 (59.63%), Query Frame = 1
Query: 13 EPTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPNGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQLKGIHYEKSSSPTPAQANIRMILSMIAALSWEARQLDVGMAYLEAEVEEEIYVDLPEAYRVSRKQAGL--LKKAMYGLVHAGLLW 489
EP T+ EA+AS EWPQW+ AI E+ G W++ E+P G V+G+ VFK K D G I KYK RLVAQGF Q+ G+ Y + +P ++IR++ ++ A WE Q+DV AYL ++EEEI++ P + ++ + L K +YGL AG W
Sbjct: 29 EPRTVDEAKASGEWPQWEAAIEDELGRMKKMGTWELAEKPPGANVVGSWWVFKIKRDASGAIAKYKARLVAQGFSQIPGVDYTDTFAPVAKLSSIRILAALAARFDWELHQMDVKNAYLNGDLEEEIFMKQPPGFPTPGQEQKVCHLFKPIYGLKQAGRRW 189
BLAST of mRNA_H-elongata_contig106255.510.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY) HSP 1 Score: 127 bits (319), Expect = 6.120e-31 Identity = 61/159 (38.36%), Postives = 99/159 (62.26%), Query Frame = 1
Query: 13 EPTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPNGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQLKGIHYEKSSSPTPAQANIRMILSMIAALSWEARQLDVGMAYLEAEVEEEIYVDLPEAYRVSRKQAGLLKKAMYGLVHAGLLW 489
EP ++ EAQAS EWP+W++A+ E D G W++ + P + +G + VF+RK +K+G++ KYK RLVAQG+ Q+ G+ + ++ +P +IR IL++ +WE Q+DV AYL +++EEIY+ PE + + L+K +YGL +G W
Sbjct: 906 EPRSLAEAQASPEWPEWEKAVKAEYDQLQGMGTWELQDLPKDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGREW 1064
BLAST of mRNA_H-elongata_contig106255.510.1 vs. uniprot
Match: A0A1M2V8C6_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V8C6_TRAPU) HSP 1 Score: 127 bits (319), Expect = 6.140e-31 Identity = 66/164 (40.24%), Postives = 103/164 (62.80%), Query Frame = 1
Query: 4 LDPEPTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPNGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQLKGIHYEKSSSPTPAQANIRMILSMIAALSWEARQLDVGMAYLEAEVEEEIYVDLPEAYRVSRKQAGL--LKKAMYGLVHAGLLW 489
L +PT++ EAQ + +WP+W+ AI EMD A + +V RP G V+G+R+VF RK D DG I++ K R+VAQGF Q+ G+ Y ++ +P +++R++L++ A SW QLDV AYL +++EEIY+ P ++ + L+K++YGL AG W
Sbjct: 984 LSGDPTSLREAQEAPDWPKWEEAITVEMDNLRAHSTYDLVVRPVGAHVIGSRLVFHRKRDADGSIKQCKVRVVAQGFGQIPGVDYNETFAPVAKSSSLRIMLALAARFSWPLIQLDVKSAYLNGDLDEEIYMRQPPGTAAQGEEHLVCRLRKSLYGLKQAGRAW 1147
BLAST of mRNA_H-elongata_contig106255.510.1 vs. uniprot
Match: A0A5C3E5T1_9BASI (Uncharacterized protein n=2 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3E5T1_9BASI) HSP 1 Score: 127 bits (318), Expect = 8.290e-31 Identity = 65/161 (40.37%), Postives = 96/161 (59.63%), Query Frame = 1
Query: 7 DPEPTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPNGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQLKGIHYEKSSSPTPAQANIRMILSMIAALSWEARQLDVGMAYLEAEVEEEIYVDLPEAYRVSRKQAGLLKKAMYGLVHAGLLW 489
D EP T+ EA+ +WP W+ AI +E+ + G W + + P G+ +G++ VFK K+ DG ++KYK RLVAQGF Q G+ Y+++ +P A +R+++++ A W A Q+DV AYL +EEEIY+ P Y K L K A+YGL AG W
Sbjct: 827 DQEPKTIEEAKRRPDWPHWETAIKKELASLSENGTWTLEDLPPGRRAVGSKWVFKIKLKADGTVDKYKARLVAQGFTQQHGVDYDETFAPVLKFATLRLLIALAAQEGWLAHQMDVITAYLNGNLEEEIYMRAPPGYAEGDKVCRLCK-ALYGLKQAGRTW 986
BLAST of mRNA_H-elongata_contig106255.510.1 vs. uniprot
Match: A0A401GN13_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GN13_9APHY) HSP 1 Score: 126 bits (317), Expect = 1.140e-30 Identity = 65/158 (41.14%), Postives = 99/158 (62.66%), Query Frame = 1
Query: 13 EPTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPNGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQLKGIHYEKSSSPTPAQANIRMILSMIAALSWEARQLDVGMAYLEAEVEEEIYVDLPEAYRVSRKQAGL--LKKAMYGLVHAG 480
+P ++ EA S+EWP+WK AIA+EM + G + +VE P ++G++ VF+ K + +G IE YK RLVAQGF Q+ GI + ++ +P A+IR+IL++ A WE Q+DV AYL ++EEEIY+ P K+ + LK+ +YGL +G
Sbjct: 921 DPASLNEAMQSTEWPKWKEAIAKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEGEIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIRLILALAARYDWELHQMDVKGAYLNGDLEEEIYMRQPPGQAEPGKEHLVCRLKRPLYGLKQSG 1078
BLAST of mRNA_H-elongata_contig106255.510.1 vs. uniprot
Match: A0A5N6P275_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P275_9ASTR) HSP 1 Score: 124 bits (312), Expect = 1.630e-30 Identity = 68/161 (42.24%), Postives = 97/161 (60.25%), Query Frame = 1
Query: 13 EPTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPNGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQLKGIHYEKSSSPTPAQANIRMILSMIAALSWEARQLDVGMAYLEAEVEEEIYVDLPEAYRVSRKQAGLLK--KAMYGLVHAGLLW 489
EP T +A SSE PQWK AI E+D W++V+ P G LG R +FKRK+ DG I+KYK RLV +GFRQ +G+ Y S SP +IR++L++ A + E Q+DV A+L ++EEEIY++ PE + ++ + K K++YGL A W
Sbjct: 284 EPQTYRDAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDSYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGFSAPGQEGKVCKLVKSLYGLKQAPKQW 444
BLAST of mRNA_H-elongata_contig106255.510.1 vs. uniprot
Match: A0A5N6PKD3_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PKD3_9ASTR) HSP 1 Score: 125 bits (315), Expect = 1.930e-30 Identity = 68/164 (41.46%), Postives = 100/164 (60.98%), Query Frame = 1
Query: 4 LDPEPTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPNGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQLKGIHYEKSSSPTPAQANIRMILSMIAALSWEARQLDVGMAYLEAEVEEEIYVDLPEAYRVSRKQAGLLK--KAMYGLVHAGLLW 489
++ EP T EA SSE PQWK AI E+D +W++V+ P G LG R +FKRK+ DG I+KYK RLV +GFRQ +G+ Y + SP +IR++L++ A + E Q+DV A+L ++EEEIY++ PE + ++ + K K++YGL A W
Sbjct: 288 VEGEPQTYREAVTSSEGPQWKEAIKNEIDSILQNHIWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGFSAPGQEGKVCKLVKSLYGLKQAPKQW 451
BLAST of mRNA_H-elongata_contig106255.510.1 vs. uniprot
Match: A0A5R9QKQ6_9BACT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Labilibacter sediminis TaxID=2570926 RepID=A0A5R9QKQ6_9BACT) HSP 1 Score: 122 bits (306), Expect = 2.030e-30 Identity = 68/164 (41.46%), Postives = 99/164 (60.37%), Query Frame = 1
Query: 4 LDPEPTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPNGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQLKGIHYEKSSSPTPAQANIRMILSMIAALSWEARQLDVGMAYLEAEVEEEIYVDLPEAYRVSRKQAGLLK--KAMYGLVHAGLLW 489
++ EP T EA SSE PQWK AI E++ W++V+ P G LG R +FKRK+ DG I+KYK RLV +G+RQ +G+ Y + SP +IRM+L++ A + + Q+DV A+L E+EEEIY++ PE + S + + K K++YGL A W
Sbjct: 26 VENEPKTYQEAVNSSEGPQWKEAIKSEIESILQNHTWELVDLPPGSKPLGYRWIFKRKMKADGSIDKYKARLVVKGYRQKEGLDYFDTYSPVTRITSIRMVLAIAAIRNLQIHQMDVKTAFLNGELEEEIYMEQPEGFVASGYENKVCKLVKSLYGLKQAPKQW 189
BLAST of mRNA_H-elongata_contig106255.510.1 vs. uniprot
Match: C6JRI2_SORBI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sorghum bicolor TaxID=4558 RepID=C6JRI2_SORBI) HSP 1 Score: 125 bits (314), Expect = 2.420e-30 Identity = 68/164 (41.46%), Postives = 101/164 (61.59%), Query Frame = 1
Query: 4 LDPEPTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPNGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQLKGIHYEKSSSPTPAQANIRMILSMIAALSWEARQLDVGMAYLEAEVEEEIYVDLPEAYRVSRKQAGLLK--KAMYGLVHAGLLW 489
+D PTT+ EA +SS+ WK A+ EMD + G W+VV+RP G +G + VFK+K+ DG IEKYK RLVA+G+ Q +G Y + SP IR++LS+ A+ + Q+DV A+L E+EEEIY+D P+ + + ++ + K K++YGL A W
Sbjct: 182 VDDTPTTISEAYSSSDSDMWKEAVQSEMDSIMSNGTWEVVDRPFGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDYFDTYSPVARLTTIRVLLSLAASHGFLIHQMDVKTAFLNGELEEEIYMDQPDGFIANGQEGKVCKLLKSLYGLKQAPKQW 345
BLAST of mRNA_H-elongata_contig106255.510.1 vs. uniprot
Match: A0A226CZD0_FOLCA (Copia protein n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226CZD0_FOLCA) HSP 1 Score: 125 bits (314), Expect = 2.740e-30 Identity = 65/159 (40.88%), Postives = 95/159 (59.75%), Query Frame = 1
Query: 13 EPTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPNGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQLKGIHYEKSSSPTPAQANIRMILSMIAALSWEARQLDVGMAYLEAEVEEEIYVDLPEAYRVSRKQAGLLKKAMYGLVHAGLLW 489
EPTT A +S +WK A+ EM + G W++V+RP GK VL R V+K K + +G IEK+K RLV +GF Q+KG+ Y ++ +P IR +LS+ AA + Q D+G AYL +E++EE+Y++ E Y + LL K +YGL +G W
Sbjct: 232 EPTTYSAALSSKYAGEWKEAMDSEMRSHSENGTWRLVKRPVGKKVLKNRWVYKIKHNPNGEIEKFKARLVVKGFNQVKGVDYTETFAPVSRYETIRTLLSVAAARKLKLVQFDIGTAYLNSELKEEVYMEQAEGYEIGSDMVYLLDKTLYGLPQSGRAW 390 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106255.510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig106255.510.1 >prot_H-elongata_contig106255.510.1 ID=prot_H-elongata_contig106255.510.1|Name=mRNA_H-elongata_contig106255.510.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=156bp MGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPNGKTVLGTRVVFKRback to top mRNA from alignment at H-elongata_contig106255:1531..2022+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig106255.510.1 ID=mRNA_H-elongata_contig106255.510.1|Name=mRNA_H-elongata_contig106255.510.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=492bp|location=Sequence derived from alignment at H-elongata_contig106255:1531..2022+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig106255:1531..2022+ >mRNA_H-elongata_contig106255.510.1 ID=mRNA_H-elongata_contig106255.510.1|Name=mRNA_H-elongata_contig106255.510.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=936bp|location=Sequence derived from alignment at H-elongata_contig106255:1531..2022+ (Himanthalia elongata Himel1 dioecious)back to top |