mRNA_H-elongata_contig106255.510.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106255.510.1
Unique NamemRNA_H-elongata_contig106255.510.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig106255.510.1 vs. uniprot
Match: A0A4Y9ZVS1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZVS1_9AGAM)

HSP 1 Score: 127 bits (320), Expect = 1.920e-31
Identity = 67/161 (41.61%), Postives = 96/161 (59.63%), Query Frame = 1
Query:   13 EPTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPNGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQLKGIHYEKSSSPTPAQANIRMILSMIAALSWEARQLDVGMAYLEAEVEEEIYVDLPEAYRVSRKQAGL--LKKAMYGLVHAGLLW 489
            EP T+ EA+AS EWPQW+ AI  E+      G W++ E+P G  V+G+  VFK K D  G I KYK RLVAQGF Q+ G+ Y  + +P    ++IR++ ++ A   WE  Q+DV  AYL  ++EEEI++  P  +    ++  +  L K +YGL  AG  W
Sbjct:   29 EPRTVDEAKASGEWPQWEAAIEDELGRMKKMGTWELAEKPPGANVVGSWWVFKIKRDASGAIAKYKARLVAQGFSQIPGVDYTDTFAPVAKLSSIRILAALAARFDWELHQMDVKNAYLNGDLEEEIFMKQPPGFPTPGQEQKVCHLFKPIYGLKQAGRRW 189          
BLAST of mRNA_H-elongata_contig106255.510.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY)

HSP 1 Score: 127 bits (319), Expect = 6.120e-31
Identity = 61/159 (38.36%), Postives = 99/159 (62.26%), Query Frame = 1
Query:   13 EPTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPNGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQLKGIHYEKSSSPTPAQANIRMILSMIAALSWEARQLDVGMAYLEAEVEEEIYVDLPEAYRVSRKQAGLLKKAMYGLVHAGLLW 489
            EP ++ EAQAS EWP+W++A+  E D     G W++ + P  +  +G + VF+RK +K+G++ KYK RLVAQG+ Q+ G+ + ++ +P     +IR IL++    +WE  Q+DV  AYL  +++EEIY+  PE +     +   L+K +YGL  +G  W
Sbjct:  906 EPRSLAEAQASPEWPEWEKAVKAEYDQLQGMGTWELQDLPKDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGREW 1064          
BLAST of mRNA_H-elongata_contig106255.510.1 vs. uniprot
Match: A0A1M2V8C6_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V8C6_TRAPU)

HSP 1 Score: 127 bits (319), Expect = 6.140e-31
Identity = 66/164 (40.24%), Postives = 103/164 (62.80%), Query Frame = 1
Query:    4 LDPEPTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPNGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQLKGIHYEKSSSPTPAQANIRMILSMIAALSWEARQLDVGMAYLEAEVEEEIYVDLPEAYRVSRKQAGL--LKKAMYGLVHAGLLW 489
            L  +PT++ EAQ + +WP+W+ AI  EMD   A   + +V RP G  V+G+R+VF RK D DG I++ K R+VAQGF Q+ G+ Y ++ +P    +++R++L++ A  SW   QLDV  AYL  +++EEIY+  P       ++  +  L+K++YGL  AG  W
Sbjct:  984 LSGDPTSLREAQEAPDWPKWEEAITVEMDNLRAHSTYDLVVRPVGAHVIGSRLVFHRKRDADGSIKQCKVRVVAQGFGQIPGVDYNETFAPVAKSSSLRIMLALAARFSWPLIQLDVKSAYLNGDLDEEIYMRQPPGTAAQGEEHLVCRLRKSLYGLKQAGRAW 1147          
BLAST of mRNA_H-elongata_contig106255.510.1 vs. uniprot
Match: A0A5C3E5T1_9BASI (Uncharacterized protein n=2 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3E5T1_9BASI)

HSP 1 Score: 127 bits (318), Expect = 8.290e-31
Identity = 65/161 (40.37%), Postives = 96/161 (59.63%), Query Frame = 1
Query:    7 DPEPTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPNGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQLKGIHYEKSSSPTPAQANIRMILSMIAALSWEARQLDVGMAYLEAEVEEEIYVDLPEAYRVSRKQAGLLKKAMYGLVHAGLLW 489
            D EP T+ EA+   +WP W+ AI +E+   +  G W + + P G+  +G++ VFK K+  DG ++KYK RLVAQGF Q  G+ Y+++ +P    A +R+++++ A   W A Q+DV  AYL   +EEEIY+  P  Y    K   L K A+YGL  AG  W
Sbjct:  827 DQEPKTIEEAKRRPDWPHWETAIKKELASLSENGTWTLEDLPPGRRAVGSKWVFKIKLKADGTVDKYKARLVAQGFTQQHGVDYDETFAPVLKFATLRLLIALAAQEGWLAHQMDVITAYLNGNLEEEIYMRAPPGYAEGDKVCRLCK-ALYGLKQAGRTW 986          
BLAST of mRNA_H-elongata_contig106255.510.1 vs. uniprot
Match: A0A401GN13_9APHY (Uncharacterized protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GN13_9APHY)

HSP 1 Score: 126 bits (317), Expect = 1.140e-30
Identity = 65/158 (41.14%), Postives = 99/158 (62.66%), Query Frame = 1
Query:   13 EPTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPNGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQLKGIHYEKSSSPTPAQANIRMILSMIAALSWEARQLDVGMAYLEAEVEEEIYVDLPEAYRVSRKQAGL--LKKAMYGLVHAG 480
            +P ++ EA  S+EWP+WK AIA+EM    + G + +VE P    ++G++ VF+ K + +G IE YK RLVAQGF Q+ GI + ++ +P    A+IR+IL++ A   WE  Q+DV  AYL  ++EEEIY+  P       K+  +  LK+ +YGL  +G
Sbjct:  921 DPASLNEAMQSTEWPKWKEAIAKEMQNLDSHGTYTLVEPPKNTNIVGSKFVFRIKHNAEGEIESYKARLVAQGFTQVPGIDFNETFAPVAKLASIRLILALAARYDWELHQMDVKGAYLNGDLEEEIYMRQPPGQAEPGKEHLVCRLKRPLYGLKQSG 1078          
BLAST of mRNA_H-elongata_contig106255.510.1 vs. uniprot
Match: A0A5N6P275_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P275_9ASTR)

HSP 1 Score: 124 bits (312), Expect = 1.630e-30
Identity = 68/161 (42.24%), Postives = 97/161 (60.25%), Query Frame = 1
Query:   13 EPTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPNGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQLKGIHYEKSSSPTPAQANIRMILSMIAALSWEARQLDVGMAYLEAEVEEEIYVDLPEAYRVSRKQAGLLK--KAMYGLVHAGLLW 489
            EP T  +A  SSE PQWK AI  E+D       W++V+ P G   LG R +FKRK+  DG I+KYK RLV +GFRQ +G+ Y  S SP     +IR++L++ A  + E  Q+DV  A+L  ++EEEIY++ PE +    ++  + K  K++YGL  A   W
Sbjct:  284 EPQTYRDAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDSYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGFSAPGQEGKVCKLVKSLYGLKQAPKQW 444          
BLAST of mRNA_H-elongata_contig106255.510.1 vs. uniprot
Match: A0A5N6PKD3_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PKD3_9ASTR)

HSP 1 Score: 125 bits (315), Expect = 1.930e-30
Identity = 68/164 (41.46%), Postives = 100/164 (60.98%), Query Frame = 1
Query:    4 LDPEPTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPNGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQLKGIHYEKSSSPTPAQANIRMILSMIAALSWEARQLDVGMAYLEAEVEEEIYVDLPEAYRVSRKQAGLLK--KAMYGLVHAGLLW 489
            ++ EP T  EA  SSE PQWK AI  E+D      +W++V+ P G   LG R +FKRK+  DG I+KYK RLV +GFRQ +G+ Y  + SP     +IR++L++ A  + E  Q+DV  A+L  ++EEEIY++ PE +    ++  + K  K++YGL  A   W
Sbjct:  288 VEGEPQTYREAVTSSEGPQWKEAIKNEIDSILQNHIWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGFSAPGQEGKVCKLVKSLYGLKQAPKQW 451          
BLAST of mRNA_H-elongata_contig106255.510.1 vs. uniprot
Match: A0A5R9QKQ6_9BACT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Labilibacter sediminis TaxID=2570926 RepID=A0A5R9QKQ6_9BACT)

HSP 1 Score: 122 bits (306), Expect = 2.030e-30
Identity = 68/164 (41.46%), Postives = 99/164 (60.37%), Query Frame = 1
Query:    4 LDPEPTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPNGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQLKGIHYEKSSSPTPAQANIRMILSMIAALSWEARQLDVGMAYLEAEVEEEIYVDLPEAYRVSRKQAGLLK--KAMYGLVHAGLLW 489
            ++ EP T  EA  SSE PQWK AI  E++       W++V+ P G   LG R +FKRK+  DG I+KYK RLV +G+RQ +G+ Y  + SP     +IRM+L++ A  + +  Q+DV  A+L  E+EEEIY++ PE +  S  +  + K  K++YGL  A   W
Sbjct:   26 VENEPKTYQEAVNSSEGPQWKEAIKSEIESILQNHTWELVDLPPGSKPLGYRWIFKRKMKADGSIDKYKARLVVKGYRQKEGLDYFDTYSPVTRITSIRMVLAIAAIRNLQIHQMDVKTAFLNGELEEEIYMEQPEGFVASGYENKVCKLVKSLYGLKQAPKQW 189          
BLAST of mRNA_H-elongata_contig106255.510.1 vs. uniprot
Match: C6JRI2_SORBI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sorghum bicolor TaxID=4558 RepID=C6JRI2_SORBI)

HSP 1 Score: 125 bits (314), Expect = 2.420e-30
Identity = 68/164 (41.46%), Postives = 101/164 (61.59%), Query Frame = 1
Query:    4 LDPEPTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPNGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQLKGIHYEKSSSPTPAQANIRMILSMIAALSWEARQLDVGMAYLEAEVEEEIYVDLPEAYRVSRKQAGLLK--KAMYGLVHAGLLW 489
            +D  PTT+ EA +SS+   WK A+  EMD   + G W+VV+RP G   +G + VFK+K+  DG IEKYK RLVA+G+ Q +G  Y  + SP      IR++LS+ A+  +   Q+DV  A+L  E+EEEIY+D P+ +  + ++  + K  K++YGL  A   W
Sbjct:  182 VDDTPTTISEAYSSSDSDMWKEAVQSEMDSIMSNGTWEVVDRPFGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDYFDTYSPVARLTTIRVLLSLAASHGFLIHQMDVKTAFLNGELEEEIYMDQPDGFIANGQEGKVCKLLKSLYGLKQAPKQW 345          
BLAST of mRNA_H-elongata_contig106255.510.1 vs. uniprot
Match: A0A226CZD0_FOLCA (Copia protein n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226CZD0_FOLCA)

HSP 1 Score: 125 bits (314), Expect = 2.740e-30
Identity = 65/159 (40.88%), Postives = 95/159 (59.75%), Query Frame = 1
Query:   13 EPTTMGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPNGKTVLGTRVVFKRKIDKDGRIEKYKCRLVAQGFRQLKGIHYEKSSSPTPAQANIRMILSMIAALSWEARQLDVGMAYLEAEVEEEIYVDLPEAYRVSRKQAGLLKKAMYGLVHAGLLW 489
            EPTT   A +S    +WK A+  EM   +  G W++V+RP GK VL  R V+K K + +G IEK+K RLV +GF Q+KG+ Y ++ +P      IR +LS+ AA   +  Q D+G AYL +E++EE+Y++  E Y +      LL K +YGL  +G  W
Sbjct:  232 EPTTYSAALSSKYAGEWKEAMDSEMRSHSENGTWRLVKRPVGKKVLKNRWVYKIKHNPNGEIEKFKARLVVKGFNQVKGVDYTETFAPVSRYETIRTLLSVAAARKLKLVQFDIGTAYLNSELKEEVYMEQAEGYEIGSDMVYLLDKTLYGLPQSGRAW 390          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106255.510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Y9ZVS1_9AGAM1.920e-3141.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GYH9_9APHY6.120e-3138.36Uncharacterized protein n=6 Tax=Sparassis crispa T... [more]
A0A1M2V8C6_TRAPU6.140e-3140.24Retrovirus-related Pol polyprotein from transposon... [more]
A0A5C3E5T1_9BASI8.290e-3140.37Uncharacterized protein n=2 Tax=Ustilago trichopho... [more]
A0A401GN13_9APHY1.140e-3041.14Uncharacterized protein n=1 Tax=Sparassis crispa T... [more]
A0A5N6P275_9ASTR1.630e-3042.24Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N6PKD3_9ASTR1.930e-3041.46Integrase catalytic domain-containing protein n=1 ... [more]
A0A5R9QKQ6_9BACT2.030e-3041.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
C6JRI2_SORBI2.420e-3041.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A226CZD0_FOLCA2.740e-3040.88Copia protein n=1 Tax=Folsomia candida TaxID=15844... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106255contigH-elongata_contig106255:1531..2022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score121.3
Seed ortholog evalue3.9e-25
Seed eggNOG ortholog4558.Sb0010s005460.1
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37YYP@33090,3GQD7@35493,3IKKZ@38820,3M3FD@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size492
Cds size468
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929593.7686248-UTR-H-elongata_contig106255:1530..15541622929593.7686248-UTR-H-elongata_contig106255:1530..1554Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106255 1531..1554 +
1691679083.4375942-UTR-H-elongata_contig106255:1530..15541691679083.4375942-UTR-H-elongata_contig106255:1530..1554Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106255 1531..1554 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929593.7849777-CDS-H-elongata_contig106255:1554..20221622929593.7849777-CDS-H-elongata_contig106255:1554..2022Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106255 1555..2022 +
1691679083.4478586-CDS-H-elongata_contig106255:1554..20221691679083.4478586-CDS-H-elongata_contig106255:1554..2022Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106255 1555..2022 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106255.510.1prot_H-elongata_contig106255.510.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106255 1555..2022 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106255.510.1

>prot_H-elongata_contig106255.510.1 ID=prot_H-elongata_contig106255.510.1|Name=mRNA_H-elongata_contig106255.510.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=156bp
MGEAQASSEWPQWKRAIAREMDGQTARGVWQVVERPNGKTVLGTRVVFKR
KIDKDGRIEKYKCRLVAQGFRQLKGIHYEKSSSPTPAQANIRMILSMIAA
LSWEARQLDVGMAYLEAEVEEEIYVDLPEAYRVSRKQAGLLKKAMYGLVH
AGLLW*
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mRNA from alignment at H-elongata_contig106255:1531..2022+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106255.510.1 ID=mRNA_H-elongata_contig106255.510.1|Name=mRNA_H-elongata_contig106255.510.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=492bp|location=Sequence derived from alignment at H-elongata_contig106255:1531..2022+ (Himanthalia elongata Himel1 dioecious)
CAGCTAGACCCAGAGCCGACAACCATGGGCGAGGCGCAAGCGTCGTCGGA GTGGCCGCAATGGAAAAGGGCGATTGCGCGCGAGATGGATGGACAAACTG CTCGGGGCGTGTGGCAGGTGGTGGAGCGCCCAAACGGGAAGACAGTGTTG GGCACGAGAGTAGTTTTCAAGCGCAAAATCGACAAGGATGGAAGGATCGA GAAGTATAAATGTCGTCTCGTGGCGCAGGGTTTCAGGCAGCTCAAAGGAA TACACTACGAGAAATCCTCCTCTCCGACCCCTGCGCAGGCCAACATTAGG ATGATACTCAGCATGATCGCGGCTCTCAGCTGGGAGGCGCGGCAGCTGGA CGTCGGCATGGCCTACCTGGAGGCCGAAGTGGAGGAGGAGATTTACGTTG ATCTCCCGGAGGCATACCGTGTTTCCAGGAAACAAGCCGGCCTACTAAAG AAGGCAATGTACGGACTCGTCCACGCCGGGCTGCTGTGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig106255:1531..2022+

>mRNA_H-elongata_contig106255.510.1 ID=mRNA_H-elongata_contig106255.510.1|Name=mRNA_H-elongata_contig106255.510.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=936bp|location=Sequence derived from alignment at H-elongata_contig106255:1531..2022+ (Himanthalia elongata Himel1 dioecious)
ATGGGCGAGGCGCAAGCGTCGTCGGAGTGGCCGCAATGGAAAAGGGCGAT
TGCGCGCGAGATGGATGGACAAACTGCTCGGGGCGTGTGGCAGGTGGTGG
AGCGCCCAAACGGGAAGACAGTGTTGGGCACGAGAGTAGTTTTCAAGCGC
AAAATCGACAAGGATGGAAGGATCGAGAAGTATAAATGTCGTCTCGTGGC
GCAGGGTTTCAGGCAGCTCAAAGGAATACACTACGAGAAATCCTCCTCTC
CGACCCCTGCGCAGGCCAACATTAGGATGATACTCAGCATGATCGCGGCT
CTCAGCTGGGAGGCGCGGCAGCTGGACGTCGGCATGGCCTACCTGGAGGC
CGAAGTGGAGGAGGAGATTTACGTTGATCTCCCGGAGGCATACCGTGTTT
CCAGGAAACAAGCCGGCCTACTAAAGAAGGCAATGTACGGACTCGTCCAC
GCCGGGCTGCTGTGGTAAATGGGCGAGGCGCAAGCGTCGTCGGAGTGGCC
GCAATGGAAAAGGGCGATTGCGCGCGAGATGGATGGACAAACTGCTCGGG
GCGTGTGGCAGGTGGTGGAGCGCCCAAACGGGAAGACAGTGTTGGGCACG
AGAGTAGTTTTCAAGCGCAAAATCGACAAGGATGGAAGGATCGAGAAGTA
TAAATGTCGTCTCGTGGCGCAGGGTTTCAGGCAGCTCAAAGGAATACACT
ACGAGAAATCCTCCTCTCCGACCCCTGCGCAGGCCAACATTAGGATGATA
CTCAGCATGATCGCGGCTCTCAGCTGGGAGGCGCGGCAGCTGGACGTCGG
CATGGCCTACCTGGAGGCCGAAGTGGAGGAGGAGATTTACGTTGATCTCC
CGGAGGCATACCGTGTTTCCAGGAAACAAGCCGGCCTACTAAAGAAGGCA
ATGTACGGACTCGTCCACGCCGGGCTGCTGTGGTAA
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