mRNA_H-elongata_contig187096.5098.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig187096.5098.1 vs. uniprot
Match: A0A6H5LR56_9PHAE (AMP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LR56_9PHAE) HSP 1 Score: 149 bits (376), Expect = 3.750e-40 Identity = 68/79 (86.08%), Postives = 75/79 (94.94%), Query Frame = 1
Query: 1 GTLLQQKKELVLHCDVQRGDRLLFFSTTGWMMWNWAAAVLSVDAAALVAYDGSPGHPNLAALWKVAAAEGVTHLGASPK 237
GTLLQQKKEL LHCD+QRGDRLLFFST GWMMWNWAAAVLS++ A+LV++DGSPGHP+LAALWKVAA EGVTHLGASPK
Sbjct: 382 GTLLQQKKELELHCDIQRGDRLLFFSTLGWMMWNWAAAVLSIEGASLVSFDGSPGHPDLAALWKVAAEEGVTHLGASPK 460
BLAST of mRNA_H-elongata_contig187096.5098.1 vs. uniprot
Match: D7G8I3_ECTSI (Acetoacetate--CoA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8I3_ECTSI) HSP 1 Score: 148 bits (373), Expect = 1.090e-39 Identity = 67/79 (84.81%), Postives = 75/79 (94.94%), Query Frame = 1
Query: 1 GTLLQQKKELVLHCDVQRGDRLLFFSTTGWMMWNWAAAVLSVDAAALVAYDGSPGHPNLAALWKVAAAEGVTHLGASPK 237
GTLLQQKKEL LHCD+QRGDRLLFFST GWMMWNWAAAVLS++ A+LV++DGSPGHP+LAALWKV+A EGVTHLGASPK
Sbjct: 402 GTLLQQKKELELHCDIQRGDRLLFFSTLGWMMWNWAAAVLSIEGASLVSFDGSPGHPDLAALWKVSAEEGVTHLGASPK 480
BLAST of mRNA_H-elongata_contig187096.5098.1 vs. uniprot
Match: A0A836CAD5_9STRA (Acetoacetyl-CoA synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAD5_9STRA) HSP 1 Score: 122 bits (307), Expect = 9.010e-31 Identity = 53/79 (67.09%), Postives = 66/79 (83.54%), Query Frame = 1
Query: 1 GTLLQQKKELVLHCDVQRGDRLLFFSTTGWMMWNWAAAVLSVDAAALVAYDGSPGHPNLAALWKVAAAEGVTHLGASPK 237
GTLL QKKEL+LHCD+ GDR+LF++TTGWMMWNW AA LSV+ A++V YDGSP +P+++ALW A+ VTHLGASPK
Sbjct: 338 GTLLHQKKELMLHCDMHAGDRMLFYTTTGWMMWNWLAAGLSVEGASIVTYDGSPAYPDISALWSAASLHKVTHLGASPK 416
BLAST of mRNA_H-elongata_contig187096.5098.1 vs. uniprot
Match: A0A3M1PGA2_9BACT (Acetoacetate--CoA ligase (Fragment) n=1 Tax=Calditrichaeota bacterium TaxID=2212469 RepID=A0A3M1PGA2_9BACT) HSP 1 Score: 102 bits (254), Expect = 8.260e-24 Identity = 45/77 (58.44%), Postives = 57/77 (74.03%), Query Frame = 1
Query: 1 GTLLQQKKELVLHCDVQRGDRLLFFSTTGWMMWNWAAAVLSVDAAALVAYDGSPGHPNLAALWKVAAAEGVTHLGAS 231
GTLLQ +KEL LHCD++ GDRLLFF+T GWMMWNW + LS+ A + +DG+PGHP L+A+W+V VTH G S
Sbjct: 290 GTLLQHRKELQLHCDLKAGDRLLFFTTCGWMMWNWQLSALSLGAT-IYLFDGNPGHPALSAIWQVVDQNAVTHFGTS 365
BLAST of mRNA_H-elongata_contig187096.5098.1 vs. uniprot
Match: A0A2V3HML2_9EURY (Acetoacetate--CoA ligase (Fragment) n=2 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2V3HML2_9EURY) HSP 1 Score: 101 bits (252), Expect = 1.120e-23 Identity = 46/79 (58.23%), Postives = 55/79 (69.62%), Query Frame = 1
Query: 1 GTLLQQKKELVLHCDVQRGDRLLFFSTTGWMMWNWAAAVLSVDAAALVAYDGSPGHPNLAALWKVAAAEGVTHLGASPK 237
GTLLQ KE L CD+Q G RL +F+T GWMMWNW + L+ A +V YDGSPGHP+L ALW++A G TH G SPK
Sbjct: 280 GTLLQHLKEHQLQCDLQSGQRLFWFTTCGWMMWNWLVSALA-SRATIVLYDGSPGHPDLGALWRLAERTGTTHFGTSPK 357
BLAST of mRNA_H-elongata_contig187096.5098.1 vs. uniprot
Match: A0A2E0J172_9GAMM (Acetoacetate--CoA ligase n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E0J172_9GAMM) HSP 1 Score: 102 bits (254), Expect = 1.320e-23 Identity = 44/79 (55.70%), Postives = 56/79 (70.89%), Query Frame = 1
Query: 1 GTLLQQKKELVLHCDVQRGDRLLFFSTTGWMMWNWAAAVLSVDAAALVAYDGSPGHPNLAALWKVAAAEGVTHLGASPK 237
G LLQ KEL+LH D+QRGD +F+T GWMMWNW + L + A L+ YDG+PGHP++ LW+VA EG+TH G S K
Sbjct: 292 GALLQHSKELMLHADIQRGDVFFYFTTCGWMMWNWLVSGL-LTGATLIVYDGNPGHPDMNTLWRVAEREGITHFGTSAK 369
BLAST of mRNA_H-elongata_contig187096.5098.1 vs. uniprot
Match: A0A2E9W6V8_9EURY (Acetoacetate--CoA ligase n=2 Tax=root TaxID=1 RepID=A0A2E9W6V8_9EURY) HSP 1 Score: 101 bits (251), Expect = 3.360e-23 Identity = 45/79 (56.96%), Postives = 56/79 (70.89%), Query Frame = 1
Query: 1 GTLLQQKKELVLHCDVQRGDRLLFFSTTGWMMWNWAAAVLSVDAAALVAYDGSPGHPNLAALWKVAAAEGVTHLGASPK 237
GTLLQ KE L CD+Q G RL +F+T GWMMWNW + L+ A +V YDGSPGHP+L A+W++A G+TH G SPK
Sbjct: 283 GTLLQHLKEHQLQCDLQPGHRLFWFTTCGWMMWNWLVSALA-SRATIVLYDGSPGHPDLGAMWRLAERTGITHFGTSPK 360
BLAST of mRNA_H-elongata_contig187096.5098.1 vs. uniprot
Match: A0A075HSZ2_9EURY (Acetoacetyl-CoA synthase (AACS, acsA) n=7 Tax=Archaea TaxID=2157 RepID=A0A075HSZ2_9EURY) HSP 1 Score: 100 bits (249), Expect = 6.260e-23 Identity = 45/79 (56.96%), Postives = 55/79 (69.62%), Query Frame = 1
Query: 1 GTLLQQKKELVLHCDVQRGDRLLFFSTTGWMMWNWAAAVLSVDAAALVAYDGSPGHPNLAALWKVAAAEGVTHLGASPK 237
GTLLQ KE L CD+Q G RL +F+T GWMMWNW + L+ A +V YDGSPGHP+L ALW++A G TH G SP+
Sbjct: 280 GTLLQHLKEHQLQCDLQPGQRLFWFTTCGWMMWNWLVSALA-SRATIVLYDGSPGHPDLGALWRLAERSGTTHFGTSPR 357
BLAST of mRNA_H-elongata_contig187096.5098.1 vs. uniprot
Match: A0A5B8RCL4_9ZZZZ (Acetyl-coenzyme A synthetase n=7 Tax=root TaxID=1 RepID=A0A5B8RCL4_9ZZZZ) HSP 1 Score: 99.8 bits (247), Expect = 1.130e-22 Identity = 47/79 (59.49%), Postives = 56/79 (70.89%), Query Frame = 1
Query: 1 GTLLQQKKELVLHCDVQRGDRLLFFSTTGWMMWNWAAAVLSVDAAALVAYDGSPGHPNLAALWKVAAAEGVTHLGASPK 237
G LLQ KEL+LH DV+R D +F+TTGWMMWNW A+ L V A LV +DGSPG+PNL LW +A EG+TH G S K
Sbjct: 230 GVLLQHSKELMLHGDVKRDDTFFYFTTTGWMMWNWLASGL-VTGAELVLFDGSPGYPNLDVLWAMAEREGLTHFGTSAK 307
BLAST of mRNA_H-elongata_contig187096.5098.1 vs. uniprot
Match: A0A2D5YJY0_9EURY (Acetoacetate--CoA ligase n=4 Tax=Archaea TaxID=2157 RepID=A0A2D5YJY0_9EURY) HSP 1 Score: 99.8 bits (247), Expect = 1.170e-22 Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = 1
Query: 1 GTLLQQKKELVLHCDVQRGDRLLFFSTTGWMMWNWAAAVLSVDAAALVAYDGSPGHPNLAALWKVAAAEGVTHLGASPK 237
GTLLQ KE L CD+Q G RL +F+T GWMMWNW + L+ +V YDGSPGHP+L A+W++A G+TH G SPK
Sbjct: 280 GTLLQHLKEHQLQCDLQPGHRLFWFTTCGWMMWNWLVSALA-SRTTIVLYDGSPGHPDLGAIWRLAERTGITHFGTSPK 357 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig187096.5098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig187096.5098.1 >prot_H-elongata_contig187096.5098.1 ID=prot_H-elongata_contig187096.5098.1|Name=mRNA_H-elongata_contig187096.5098.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp GTLLQQKKELVLHCDVQRGDRLLFFSTTGWMMWNWAAAVLSVDAAALVAYback to top mRNA from alignment at H-elongata_contig187096:64..303- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig187096.5098.1 ID=mRNA_H-elongata_contig187096.5098.1|Name=mRNA_H-elongata_contig187096.5098.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=240bp|location=Sequence derived from alignment at H-elongata_contig187096:64..303- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig187096:64..303- >mRNA_H-elongata_contig187096.5098.1 ID=mRNA_H-elongata_contig187096.5098.1|Name=mRNA_H-elongata_contig187096.5098.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig187096:64..303- (Himanthalia elongata Himel1 dioecious)back to top |