mRNA_H-elongata_contig187003.5096.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig187003.5096.1
Unique NamemRNA_H-elongata_contig187003.5096.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig187003.5096.1 vs. uniprot
Match: D7G542_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G542_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 2.760e-53
Identity = 86/94 (91.49%), Postives = 93/94 (98.94%), Query Frame = 1 
Query:    1 VKASRLPDNIPLLQRLVDDGIIVATPPQDYDDSYCIKYAMAKDGYLVTNDLYRDHVKGIEGRKKADAARRWIKSHSISYTFVGDEFFPNPDFSF 282
            VKASRLPD++ LLQRLVDDG+IV+TPPQDYDDSYCIKYAMA+DGY+VTNDLYRDHVKGIEGRKKADAARRWIK+HSISYTFVGDEFFPNPDFSF
Sbjct: 1494 VKASRLPDDVQLLQRLVDDGLIVSTPPQDYDDSYCIKYAMARDGYVVTNDLYRDHVKGIEGRKKADAARRWIKAHSISYTFVGDEFFPNPDFSF 1587
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BLAST of mRNA_H-elongata_contig187003.5096.1 vs. uniprot
Match: K3W6K7_GLOUD (RNase NYN domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6K7_GLOUD)

HSP 1 Score: 127 bits (318), Expect = 6.070e-35
Identity = 57/94 (60.64%), Postives = 76/94 (80.85%), Query Frame = 1 
Query:    1 VKASRLPDNIPLLQRLVDDGIIVATPPQDYDDSYCIKYAMAKDGYLVTNDLYRDHVKGIEG-RKKADAARRWIKSHSISYTFVGDEFFPNPDFS 279
            V AS++PDN+ LLQRLV+DG+++ TP QDYDD+YCI+YA   DG +VTNDLYRDHV+ + G R++  A R W+ +H ISYT+VG+EF PNP+FS
Sbjct:   91 VPASKIPDNVALLQRLVEDGLLIPTPAQDYDDTYCIQYAGNHDGCVVTNDLYRDHVENMTGPRERKVAMRSWLTAHRISYTWVGNEFLPNPNFS 184
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BLAST of mRNA_H-elongata_contig187003.5096.1 vs. uniprot
Match: A0A485LSN2_9STRA (Aste57867_25204 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LSN2_9STRA)

HSP 1 Score: 135 bits (339), Expect = 8.070e-35
Identity = 58/94 (61.70%), Postives = 77/94 (81.91%), Query Frame = 1 
Query:    1 VKASRLPDNIPLLQRLVDDGIIVATPPQDYDDSYCIKYAMAKDGYLVTNDLYRDHVKGIEGRKKADAARRWIKSHSISYTFVGDEFFPNPDFSF 282
            V  ++LPD++ LLQ +V +G+++ATPPQDYDDSYCI+YA   DG LVTNDL+RDH++ I+G K+  A R W+K+H IS+T+VGDEFFPNPDF F
Sbjct:  865 VSPTKLPDDVTLLQAMVLEGLVIATPPQDYDDSYCIQYAGTHDGCLVTNDLFRDHLENIKGGKQKGAMREWLKNHRISFTWVGDEFFPNPDFRF 958
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BLAST of mRNA_H-elongata_contig187003.5096.1 vs. uniprot
Match: A0A7S2CKB1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CKB1_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.920e-34
Identity = 53/94 (56.38%), Postives = 72/94 (76.60%), Query Frame = 1 
Query:    1 VKASRLPDNIPLLQRLVDDGIIVATPPQDYDDSYCIKYAMAKDGYLVTNDLYRDHVKGIEGRKKADAARRWIKSHSISYTFVGDEFFPNPDFSF 282
            +++S+LPD++ LL++L +DG ++ TPPQDYDDSYCI+YA    G +VTND+YRDHV  I   ++     +W++SH ISYTFVGDEF PNPDF F
Sbjct:  106 IRSSQLPDDVLLLRKLCEDGTLIGTPPQDYDDSYCIRYAETHGGSVVTNDMYRDHVGKITNHRERKECLQWMRSHLISYTFVGDEFLPNPDFKF 199
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BLAST of mRNA_H-elongata_contig187003.5096.1 vs. uniprot
Match: A0A6G0XRT9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XRT9_9STRA)

HSP 1 Score: 132 bits (333), Expect = 5.190e-34
Identity = 57/94 (60.64%), Postives = 76/94 (80.85%), Query Frame = 1 
Query:    1 VKASRLPDNIPLLQRLVDDGIIVATPPQDYDDSYCIKYAMAKDGYLVTNDLYRDHVKGIEGRKKADAARRWIKSHSISYTFVGDEFFPNPDFSF 282
            V  S++PD++ LLQ +V +G+++ATPPQDYDDSYCI+YA   DG LVTND++RDHV+ I+   + +A R W+KSH IS+T+VGDEFFPNPDF F
Sbjct:  817 VSPSKVPDDVTLLQSMVLEGLVIATPPQDYDDSYCIQYAGTHDGCLVTNDMFRDHVENIKSNAQRNAMRDWLKSHRISFTWVGDEFFPNPDFRF 910
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BLAST of mRNA_H-elongata_contig187003.5096.1 vs. uniprot
Match: A0A7S2D3B2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D3B2_9STRA)

HSP 1 Score: 120 bits (300), Expect = 5.420e-33
Identity = 50/91 (54.95%), Postives = 70/91 (76.92%), Query Frame = 1 
Query:    1 VKASRLPDNIPLLQRLVDDGIIVATPPQDYDDSYCIKYAMAKDGYLVTNDLYRDHVKGIEGRKKADAARRWIKSHSISYTFVGDEFFPNPD 273
            V+AS++PD++ LLQ+L  +G ++ TPPQDYDDSYCI+YA + DG +VTND+YRDHVKG   R+  +  + W  +H +SYT+V DEF PNP+
Sbjct:   39 VRASQVPDDVLLLQQLCAEGTLIGTPPQDYDDSYCIRYAQSHDGLVVTNDMYRDHVKGQATREDREREKEWTNTHLVSYTWVQDEFLPNPE 129
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BLAST of mRNA_H-elongata_contig187003.5096.1 vs. uniprot
Match: A0A1V9YYR1_9STRA (N-acetyltransferase domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YYR1_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.170e-32
Identity = 61/96 (63.54%), Postives = 78/96 (81.25%), Query Frame = 1 
Query:    1 VKASRLPDNIPLLQRLVDDGIIVATPPQDYDDSYCIKYAMAKDGYLVTNDLYRDHVKGIE--GRKKADAARRWIKSHSISYTFVGDEFFPNPDFSF 282
            V  S+LPD++ LLQ +V +G I+ATPPQDYDDSYCI+YA   DG +VTNDL+RDHV+G+   G+KKA A R+W+ +H IS+T+VGDEFFPNPDF F
Sbjct: 1095 VNPSKLPDDVALLQSMVLEGTIIATPPQDYDDSYCIQYAGHHDGCVVTNDLFRDHVEGMNASGQKKA-AMRQWLAAHRISFTWVGDEFFPNPDFRF 1189
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BLAST of mRNA_H-elongata_contig187003.5096.1 vs. uniprot
Match: T0QIU5_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QIU5_SAPDV)

HSP 1 Score: 127 bits (319), Expect = 4.020e-32
Identity = 57/95 (60.00%), Postives = 75/95 (78.95%), Query Frame = 1 
Query:    1 VKASRLPDNIPLLQRLVDDGIIVATPPQDYDDSYCIKYAMAKDGYLVTNDLYRDHVKGIEGRKKADAA-RRWIKSHSISYTFVGDEFFPNPDFSF 282
            V  S+LPD++ LLQ +V +G ++ATPPQDYDDSYCI+YA   DG +VTNDL+RDHV G++G  +  AA R+W+ +H IS+T+VGDEF PNPDF F
Sbjct:  804 VSPSKLPDDVGLLQSMVLEGTVIATPPQDYDDSYCIQYAGRHDGCVVTNDLFRDHVDGLQGNGQTKAAMRQWLSAHCISFTWVGDEFLPNPDFRF 898
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BLAST of mRNA_H-elongata_contig187003.5096.1 vs. uniprot
Match: W4FWI5_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FWI5_9STRA)

HSP 1 Score: 127 bits (318), Expect = 5.510e-32
Identity = 55/94 (58.51%), Postives = 72/94 (76.60%), Query Frame = 1 
Query:    1 VKASRLPDNIPLLQRLVDDGIIVATPPQDYDDSYCIKYAMAKDGYLVTNDLYRDHVKGIEGRKKADAARRWIKSHSISYTFVGDEFFPNPDFSF 282
            V  ++LPD++ LLQ +  +G+++ATPPQDYDDSYCI+YA   DG LVTNDL+RDH+  I+   K  A R W+K+H IS+T+VGDEF PNPDF F
Sbjct:  864 VSPTKLPDDVTLLQAMKQEGLVIATPPQDYDDSYCIQYAGTHDGCLVTNDLFRDHLDNIKPSHKRGAMRDWLKAHRISFTWVGDEFLPNPDFRF 957
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BLAST of mRNA_H-elongata_contig187003.5096.1 vs. uniprot
Match: A0A067CRV2_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CRV2_SAPPC)

HSP 1 Score: 126 bits (317), Expect = 7.480e-32
Identity = 57/95 (60.00%), Postives = 75/95 (78.95%), Query Frame = 1 
Query:    1 VKASRLPDNIPLLQRLVDDGIIVATPPQDYDDSYCIKYAMAKDGYLVTNDLYRDHVKGIEGRKKADAA-RRWIKSHSISYTFVGDEFFPNPDFSF 282
            V  S+LPD++ LLQ +V +G ++ATPPQDYDDSYCI+YA   DG +VTNDL+RDHV G++G  +  AA R+W+ +H IS+T+VGDEF PNPDF F
Sbjct:  790 VSPSKLPDDVGLLQSMVLEGTVIATPPQDYDDSYCIQYAGRHDGCVVTNDLFRDHVDGLQGTGQQKAAMRQWLSAHCISFTWVGDEFLPNPDFRF 884
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig187003.5096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G542_ECTSI2.760e-5391.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
K3W6K7_GLOUD6.070e-3560.64RNase NYN domain-containing protein n=1 Tax=Globis... [more]
A0A485LSN2_9STRA8.070e-3561.70Aste57867_25204 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S2CKB1_9STRA1.920e-3456.38Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6G0XRT9_9STRA5.190e-3460.64Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S2D3B2_9STRA5.420e-3354.95Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A1V9YYR1_9STRA1.170e-3263.54N-acetyltransferase domain-containing protein n=1 ... [more]
T0QIU5_SAPDV4.020e-3260.00Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
W4FWI5_9STRA5.510e-3258.51Uncharacterized protein n=9 Tax=Aphanomyces astaci... [more]
A0A067CRV2_SAPPC7.480e-3260.00Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig187003contigH-elongata_contig187003:402..1123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.7
Seed ortholog evalue1.2e-45
Seed eggNOG ortholog2880.D7G542
Preferred nameEBS1
KEGG koko:K11124,ko:K11132,ko:K18668
KEGG Pathwayko03015,map03015
GOsGO:0000018,GO:0000019,GO:0000184,GO:0000228,GO:0000723,GO:0000781,GO:0000784,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003723,GO:0003824,GO:0004518,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005697,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006278,GO:0006310,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007004,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0010638,GO:0010639,GO:0010833,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016787,GO:0016788,GO:0017148,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031503,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032205,GO:0032206,GO:0032207,GO:0032208,GO:0032210,GO:0032212,GO:0032268,GO:0032269,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0034248,GO:0034249,GO:0034399,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0035770,GO:0036464,GO:0042162,GO:0042592,GO:0042886,GO:0043021,GO:0043047,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043487,GO:0043565,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045184,GO:0045910,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046907,GO:0048239,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051028,GO:0051052,GO:0051053,GO:0051054,GO:0051128,GO:0051129,GO:0051130,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051248,GO:0051252,GO:0051276,GO:0051641,GO:0051649,GO:0060249,GO:0060255,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070034,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0071897,GO:0071919,GO:0072695,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0098687,GO:0098847,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1904356,GO:1904358,GO:1905324,GO:1990904,GO:2000112,GO:2000113,GO:2000278,GO:2000573,GO:2001251,GO:2001252
EggNOG free text desc.zinc finger CCCH-type containing
EggNOG OGsKOG2162@1,KOG2162@2759,KOG3777@1,KOG3777@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03032
Hectar predicted targeting categoryother localisation
Exons2
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930069.385893-CDS-H-elongata_contig187003:401..5521622930069.385893-CDS-H-elongata_contig187003:401..552Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187003 402..552 -
1691679269.0542152-CDS-H-elongata_contig187003:401..5521691679269.0542152-CDS-H-elongata_contig187003:401..552Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187003 402..552 -
1622930069.3965282-CDS-H-elongata_contig187003:992..11231622930069.3965282-CDS-H-elongata_contig187003:992..1123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187003 993..1123 -
1691679269.0677228-CDS-H-elongata_contig187003:992..11231691679269.0677228-CDS-H-elongata_contig187003:992..1123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig187003 993..1123 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig187003.5096.1prot_H-elongata_contig187003.5096.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig187003 402..1123 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig187003.5096.1

>prot_H-elongata_contig187003.5096.1 ID=prot_H-elongata_contig187003.5096.1|Name=mRNA_H-elongata_contig187003.5096.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
VKASRLPDNIPLLQRLVDDGIIVATPPQDYDDSYCIKYAMAKDGYLVTND
LYRDHVKGIEGRKKADAARRWIKSHSISYTFVGDEFFPNPDFSF
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mRNA from alignment at H-elongata_contig187003:402..1123-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig187003.5096.1 ID=mRNA_H-elongata_contig187003.5096.1|Name=mRNA_H-elongata_contig187003.5096.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=722bp|location=Sequence derived from alignment at H-elongata_contig187003:402..1123- (Himanthalia elongata Himel1 dioecious)
GTGAAAGCCTCTCGCCTGCCGGACAACATCCCGCTGCTGCAGCGCTTAGT
GGATGACGGGATAATCGTGGCAACGCCTCCTCAGGACTACGACGACTCGT
ACTGCATCAAGTACGCCATGGCCAAAGACGGGTGAGCTGCGAGCTACTTG
TATTGTTATATTTACCGTGAAAAAAAACGCCCTCCCGGGGATGGGTTGTG
TACTCCCCCGCCTTTCCTATCTCTCCCTCTTCCTCTTTCCCGTCTCTTGA
TGTTTCTGGCAGCAGCAGCATCATCGATGGTTCAAGGCACAGTAGTTGTT
GGAAAGGTAGTAGCGAGGCTGTTTCATGAGCCATCCATCGCCTTGGTAGC
TTACTTGCTTGAAAGGTCGATGGAAAGTGTGTCTGTCTTTCTCCCTGTCT
CTATCTCTCTGCCTATTACTGCCTATTACTCCTTGTAACTGCCTATAACT
GCGCATGGTTTGTTAACCTTTGCCACCTCGGTGGGTGGCGAGAACCCACT
GCTCAACAGCATCCCCTGTCCCCGTTCCCCCTTCCCTAAAATTTCAAAAA
CAAAATGTACCCTACACCCAGGTATTTGGTTACCAACGACCTGTACCGGG
ACCACGTGAAGGGCATCGAGGGCCGCAAGAAGGCGGATGCCGCTCGACGC
TGGATCAAGTCGCACTCCATCTCCTACACCTTCGTGGGGGACGAGTTCTT
CCCCAATCCGGATTTCTCCTTT
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Coding sequence (CDS) from alignment at H-elongata_contig187003:402..1123-

>mRNA_H-elongata_contig187003.5096.1 ID=mRNA_H-elongata_contig187003.5096.1|Name=mRNA_H-elongata_contig187003.5096.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig187003:402..1123- (Himanthalia elongata Himel1 dioecious)
GTGAAAGCCTCTCGCCTGCCGGACAACATCCCGCTGCTGCAGCGCTTAGT
GGATGACGGGATAATCGTGGCAACGCCTCCTCAGGACTACGACGACTCGT
ACTGCATCAAGTACGCCATGGCCAAAGACGGGTGAAAGCCTCTCGCCTGC
CGGACAACATCCCGCTGCTGCAGCGCTTAGTGGATGACGGGATAATCGTG
GCAACGCCTCCTCAGGACTACGACGACTCGTACTGCATCAAGTACGCCAT
GGCCAAAGACGGGTATTTGGTTACCAACGACCTGTACCGGGACCACGTGA
AGGGCATCGAGGGCCGCAAGAAGGCGGATGCCGCTCGACGCTGGATCAAG
TCGCACTCCATCTCCTACACCTTCGTGGGGGACGAGTTCTTCCCCAATCC
GGATTTCTCCTTTGTATTTGGTTACCAACGACCTGTACCGGGACCACGTG
AAGGGCATCGAGGGCCGCAAGAAGGCGGATGCCGCTCGACGCTGGATCAA
GTCGCACTCCATCTCCTACACCTTCGTGGGGGACGAGTTCTTCCCCAATC
CGGATTTCTCCTTT
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