mRNA_H-elongata_contig186972.5094.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig186972.5094.1
Unique NamemRNA_H-elongata_contig186972.5094.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig186972.5094.1 vs. uniprot
Match: A0A0U1XDC4_9PHAE (NADH-ubiquinone oxidoreductase chain 3 n=66 Tax=Phaeophyceae TaxID=2870 RepID=A0A0U1XDC4_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 1.970e-70
Identity = 108/120 (90.00%), Postives = 113/120 (94.17%), Query Frame = 1 
Query:    1 MFFLKEYYPVLIFLGFSLALALLIFGASYTLAFSEADNEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPWAASLSQLPSIGYWSMMDFLLELVIGFIYAWQIGSLDWE 360
            MFFLKEYYP LIFLGFSL LA LIFGASY LA S++D+EKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIET+FLFPWA SLSQLPSIGYWSMMDFL ELV+GFIYAWQIGSLDWE
Sbjct:    1 MFFLKEYYPALIFLGFSLFLAALIFGASYILAISDSDSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWAVSLSQLPSIGYWSMMDFLFELVVGFIYAWQIGSLDWE 120
[Close]
BLAST of mRNA_H-elongata_contig186972.5094.1 vs. uniprot
Match: E6ZET4_ECTSI (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZET4_ECTSI)

HSP 1 Score: 217 bits (553), Expect = 1.140e-69
Identity = 107/120 (89.17%), Postives = 114/120 (95.00%), Query Frame = 1 
Query:    1 MFFLKEYYPVLIFLGFSLALALLIFGASYTLAFSEADNEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPWAASLSQLPSIGYWSMMDFLLELVIGFIYAWQIGSLDWE 360
            MFFLKEYYPVLIFLGFSLALA +IFGAS+ LA S+AD EKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIET+FLFPW+ SLSQLPSIGYWSM+DFL ELV+GFIYAWQIGSLDWE
Sbjct:    1 MFFLKEYYPVLIFLGFSLALAGVIFGASFILAVSDADTEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWSVSLSQLPSIGYWSMLDFLFELVVGFIYAWQIGSLDWE 120
[Close]
BLAST of mRNA_H-elongata_contig186972.5094.1 vs. uniprot
Match: Q94YZ1_PYLLI (NADH-ubiquinone oxidoreductase chain 3 n=3 Tax=Ectocarpales TaxID=2877 RepID=Q94YZ1_PYLLI)

HSP 1 Score: 212 bits (539), Expect = 1.530e-67
Identity = 105/120 (87.50%), Postives = 109/120 (90.83%), Query Frame = 1 
Query:    1 MFFLKEYYPVLIFLGFSLALALLIFGASYTLAFSEADNEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPWAASLSQLPSIGYWSMMDFLLELVIGFIYAWQIGSLDWE 360
            MF LKEYYP LIFL FS  LA +IFGASY LA S AD+EKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIET+FLFPWA SLSQLPSIGYWSMMDFL ELV+GFIYAWQIGSLDWE
Sbjct:    1 MFLLKEYYPALIFLVFSFVLAAIIFGASYILAVSSADSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWAVSLSQLPSIGYWSMMDFLFELVVGFIYAWQIGSLDWE 120
[Close]
BLAST of mRNA_H-elongata_contig186972.5094.1 vs. uniprot
Match: A0A0U1WNN7_SARFS (NADH-ubiquinone oxidoreductase chain 3 n=22 Tax=Sargassaceae TaxID=3014 RepID=A0A0U1WNN7_SARFS)

HSP 1 Score: 209 bits (531), Expect = 2.520e-66
Identity = 102/120 (85.00%), Postives = 112/120 (93.33%), Query Frame = 1 
Query:    1 MFFLKEYYPVLIFLGFSLALALLIFGASYTLAFSEADNEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPWAASLSQLPSIGYWSMMDFLLELVIGFIYAWQIGSLDWE 360
            MFFL+EY P LI+L FSL LA +IFGASYTLA +E+DNEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVF+FPWAASLSQLP +GYWS++DFL ELV+GFIYAWQIGSLDWE
Sbjct:    1 MFFLREYSPALIYLCFSLILASVIFGASYTLALAESDNEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFIFPWAASLSQLPPVGYWSVIDFLFELVVGFIYAWQIGSLDWE 120
[Close]
BLAST of mRNA_H-elongata_contig186972.5094.1 vs. uniprot
Match: Q2TU99_DICDH (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=Q2TU99_DICDH)

HSP 1 Score: 203 bits (516), Expect = 4.650e-64
Identity = 98/119 (82.35%), Postives = 109/119 (91.60%), Query Frame = 1 
Query:    1 MFFLKEYYPVLIFLGFSLALALLIFGASYTLAFSEADNEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPWAASLSQLPSIGYWSMMDFLLELVIGFIYAWQIGSLDW 357
            MF+L EYYPVL+F   S+ LA LIFG SY LAFS+AD+EKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVF+FPWA SLSQLPS+GYWSMMDFL EL++GFIYAW+IGSL+W
Sbjct:    1 MFYLHEYYPVLLFFLISILLAFLIFGLSYILAFSKADSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFVFPWAVSLSQLPSVGYWSMMDFLFELIVGFIYAWKIGSLEW 119
[Close]
BLAST of mRNA_H-elongata_contig186972.5094.1 vs. uniprot
Match: A0A8E8U4L6_9PHAE (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8U4L6_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 4.800e-64
Identity = 95/117 (81.20%), Postives = 109/117 (93.16%), Query Frame = 1 
Query:   10 LKEYYPVLIFLGFSLALALLIFGASYTLAFSEADNEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPWAASLSQLPSIGYWSMMDFLLELVIGFIYAWQIGSLDWE 360
            L EYYP+L+F+ FSL L+LLIFGASYT + +E DNEK+SSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPW  +LS+LP++GYWSM+DF++ELVIGFIYAWQIGSLDWE
Sbjct:    4 LPEYYPILLFITFSLFLSLLIFGASYTFSIAEPDNEKVSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPWVVTLSELPAVGYWSMVDFIIELVIGFIYAWQIGSLDWE 120
[Close]
BLAST of mRNA_H-elongata_contig186972.5094.1 vs. uniprot
Match: A0A8F0K0X7_9PHAE (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0K0X7_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 6.590e-64
Identity = 99/119 (83.19%), Postives = 108/119 (90.76%), Query Frame = 1 
Query:    1 MFFLKEYYPVLIFLGFSLALALLIFGASYTLAFSEADNEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPWAASLSQLPSIGYWSMMDFLLELVIGFIYAWQIGSLDW 357
            MF   EYYPVL+FL     LA++IFGASY L FS+ADNEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIET+FLFPWA +LSQLPS+GYWSMMDFLLELV+GFIYAWQIGSL+W
Sbjct:    1 MFCFHEYYPVLLFLVVGFILAVIIFGASYFLVFSKADNEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWAITLSQLPSLGYWSMMDFLLELVVGFIYAWQIGSLEW 119
[Close]
BLAST of mRNA_H-elongata_contig186972.5094.1 vs. uniprot
Match: A0A4Y5T7V9_9PHAE (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T7V9_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 1.590e-62
Identity = 97/120 (80.83%), Postives = 108/120 (90.00%), Query Frame = 1 
Query:    1 MFFLKEYYPVLIFLGFSLALALLIFGASYTLAFSEADNEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPWAASLSQLPSIGYWSMMDFLLELVIGFIYAWQIGSLDWE 360
            MF+L EYY +LIFL  S+ LA +IFGASY LA S +D+EKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVF+FPWA SLSQ+PSIGYWSMMDFL ELV+GFIYAW+IGSL+W 
Sbjct:    1 MFYLHEYYSILIFLVISVLLAFIIFGASYLLALSNSDSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFVFPWAISLSQMPSIGYWSMMDFLFELVVGFIYAWKIGSLEWS 120
[Close]
BLAST of mRNA_H-elongata_contig186972.5094.1 vs. uniprot
Match: Q2TUD9_9PHAE (Ribosomal protein S14 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUD9_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 3.100e-57
Identity = 94/96 (97.92%), Postives = 94/96 (97.92%), Query Frame = 3 
Query:  360 MRRLDFKRRQSFAIYEAKRKALQAVATNQHLDISLRWWAQLEKSKLPRQSSLSRVHNHCVETGRSRSVISFYKLSRLQFRRLASKGSFSGLRKSCW 647
            MR LD KRRQSFAIYEAKRKALQAVATNQHLDISLRWWAQLEKSKLPRQSSLSRVHNHCVETGRSRSVISFYKLSRLQFRRLASKGSFSGLRKSCW
Sbjct:    1 MRSLDLKRRQSFAIYEAKRKALQAVATNQHLDISLRWWAQLEKSKLPRQSSLSRVHNHCVETGRSRSVISFYKLSRLQFRRLASKGSFSGLRKSCW 96
[Close]
BLAST of mRNA_H-elongata_contig186972.5094.1 vs. uniprot
Match: A0A7S6UA31_9STRA (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA31_9STRA)

HSP 1 Score: 179 bits (453), Expect = 1.950e-54
Identity = 86/117 (73.50%), Postives = 99/117 (84.62%), Query Frame = 1 
Query:   13 KEYYPVLIFLGFSLALALLIFGASYTLAFSEADNEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPWAASLSQLP-SIGYWSMMDFLLELVIGFIYAWQIGSLDWE 360
            +EYYP+L+F   S+ LA LIFGASY LA ++ D EKLSSYECGFDPYEDARNAFDVRFYLVAILFL+FD+E VFLFPWA  L Q   S+G WSM+DFL EL++GF+YAWQIGSLDWE
Sbjct:    7 QEYYPILVFTFLSIGLAGLIFGASYALALAKPDTEKLSSYECGFDPYEDARNAFDVRFYLVAILFLIFDLEAVFLFPWAVGLGQQSTSLGLWSMIDFLFELLVGFVYAWQIGSLDWE 123
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig186972.5094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0U1XDC4_9PHAE1.970e-7090.00NADH-ubiquinone oxidoreductase chain 3 n=66 Tax=Ph... [more]
E6ZET4_ECTSI1.140e-6989.17NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Ect... [more]
Q94YZ1_PYLLI1.530e-6787.50NADH-ubiquinone oxidoreductase chain 3 n=3 Tax=Ect... [more]
A0A0U1WNN7_SARFS2.520e-6685.00NADH-ubiquinone oxidoreductase chain 3 n=22 Tax=Sa... [more]
Q2TU99_DICDH4.650e-6482.35NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Dic... [more]
A0A8E8U4L6_9PHAE4.800e-6481.20NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Pha... [more]
A0A8F0K0X7_9PHAE6.590e-6483.19NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Pro... [more]
A0A4Y5T7V9_9PHAE1.590e-6280.83NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Dic... [more]
Q2TUD9_9PHAE3.100e-5797.92Ribosomal protein S14 n=2 Tax=Desmarestia TaxID=31... [more]
A0A7S6UA31_9STRA1.950e-5473.50NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Sch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig186972contigH-elongata_contig186972:531..1177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score146.4
Seed ortholog evalue8.9e-33
Seed eggNOG ortholog1380394.JADL01000005_gene5381
Preferred namenuoA
KEGG rclassRC00061
KEGG koko:K00330
KEGG TC3.D.1
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,map00190,map01100
KEGG ModuleM00144
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005623,GO:0005886,GO:0008137,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0030964,GO:0032991,GO:0044425,GO:0044464,GO:0050136,GO:0055114,GO:0071944,GO:0098796,GO:1902494
EggNOG free text desc.NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
EggNOG OGs1RGUT@1224,2JSW8@204441,2U72Q@28211,COG0838@1,COG0838@2
EC1.6.5.3
COG Functional cat.C
Best tax levelRhodospirillales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categorysignal peptide
Exons1
Model size647
Cds size363
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930069.1012125-UTR-H-elongata_contig186972:530..8141622930069.1012125-UTR-H-elongata_contig186972:530..814Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig186972 531..814 -
1691679268.923047-UTR-H-elongata_contig186972:530..8141691679268.923047-UTR-H-elongata_contig186972:530..814Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig186972 531..814 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930069.1130896-CDS-H-elongata_contig186972:814..11771622930069.1130896-CDS-H-elongata_contig186972:814..1177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186972 815..1177 -
1691679268.9438496-CDS-H-elongata_contig186972:814..11771691679268.9438496-CDS-H-elongata_contig186972:814..1177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186972 815..1177 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig186972.5094.1prot_H-elongata_contig186972.5094.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig186972 815..1177 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig186972.5094.1

>prot_H-elongata_contig186972.5094.1 ID=prot_H-elongata_contig186972.5094.1|Name=mRNA_H-elongata_contig186972.5094.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
MFFLKEYYPVLIFLGFSLALALLIFGASYTLAFSEADNEKLSSYECGFDP
YEDARNAFDVRFYLVAILFLLFDIETVFLFPWAASLSQLPSIGYWSMMDF
LLELVIGFIYAWQIGSLDWE*
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mRNA from alignment at H-elongata_contig186972:531..1177-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig186972.5094.1 ID=mRNA_H-elongata_contig186972.5094.1|Name=mRNA_H-elongata_contig186972.5094.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=647bp|location=Sequence derived from alignment at H-elongata_contig186972:531..1177- (Himanthalia elongata Himel1 dioecious)
ATGTTTTTTTTAAAAGAATATTATCCTGTATTAATTTTTTTAGGGTTTAG
TCTTGCTTTAGCCCTTCTTATTTTTGGCGCTTCATATACTTTGGCTTTTT
CGGAAGCAGATAACGAAAAATTATCATCTTATGAGTGTGGTTTTGATCCA
TATGAGGATGCACGTAATGCTTTTGATGTTCGTTTTTACCTTGTTGCTAT
TCTTTTTCTTCTTTTTGATATTGAAACCGTTTTTCTATTTCCTTGGGCCG
CTTCATTGAGCCAATTACCTTCGATTGGATACTGGTCAATGATGGATTTT
CTGTTAGAGTTAGTTATTGGGTTTATTTATGCTTGGCAAATAGGTAGTTT
AGATTGGGAATGAGACGTCTTGACTTTAAACGCCGACAATCTTTTGCTAT
TTATGAAGCTAAGCGTAAAGCGCTACAGGCTGTTGCAACTAACCAACATT
TAGATATTTCTTTACGTTGGTGGGCTCAGCTAGAAAAATCTAAGTTACCC
AGACAAAGTAGTTTAAGTAGAGTTCATAATCATTGTGTGGAGACTGGCAG
ATCTCGATCTGTTATAAGTTTTTATAAACTGTCGCGACTACAATTTCGCC
GTTTAGCGTCAAAGGGTTCTTTTTCTGGCTTACGAAAGTCTTGTTGG
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Coding sequence (CDS) from alignment at H-elongata_contig186972:531..1177-

>mRNA_H-elongata_contig186972.5094.1 ID=mRNA_H-elongata_contig186972.5094.1|Name=mRNA_H-elongata_contig186972.5094.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig186972:531..1177- (Himanthalia elongata Himel1 dioecious)
ATGTTTTTTTTAAAAGAATATTATCCTGTATTAATTTTTTTAGGGTTTAG
TCTTGCTTTAGCCCTTCTTATTTTTGGCGCTTCATATACTTTGGCTTTTT
CGGAAGCAGATAACGAAAAATTATCATCTTATGAGTGTGGTTTTGATCCA
TATGAGGATGCACGTAATGCTTTTGATGTTCGTTTTTACCTTGTTGCTAT
TCTTTTTCTTCTTTTTGATATTGAAACCGTTTTTCTATTTCCTTGGGCCG
CTTCATTGAGCCAATTACCTTCGATTGGATACTGGTCAATGATGGATTTT
CTGTTAGAGTTAGTTATTGGGTTTATTTATGCTTGGCAAATAGGTAGTTT
AGATTGGGAATGAATGTTTTTTTTAAAAGAATATTATCCTGTATTAATTT
TTTTAGGGTTTAGTCTTGCTTTAGCCCTTCTTATTTTTGGCGCTTCATAT
ACTTTGGCTTTTTCGGAAGCAGATAACGAAAAATTATCATCTTATGAGTG
TGGTTTTGATCCATATGAGGATGCACGTAATGCTTTTGATGTTCGTTTTT
ACCTTGTTGCTATTCTTTTTCTTCTTTTTGATATTGAAACCGTTTTTCTA
TTTCCTTGGGCCGCTTCATTGAGCCAATTACCTTCGATTGGATACTGGTC
AATGATGGATTTTCTGTTAGAGTTAGTTATTGGGTTTATTTATGCTTGGC
AAATAGGTAGTTTAGATTGGGAATGA
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