mRNA_H-elongata_contig186972.5093.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig186972.5093.1
Unique NamemRNA_H-elongata_contig186972.5093.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig186972.5093.1 vs. uniprot
Match: Q2TUD8_9PHAE (ATPase subunit 8 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUD8_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 7.290e-32
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 1
Query:    1 MPQFDTMTFFNQVFWLVVIVFNFYVVVVRFMLPPLAFSLKSRNKNLRLTDDPKLRGY 171
            MPQFDTMTFFNQVFWLVVIVFNFYVVVVRFMLPPLAFSLKSRNKNLRLTDDP+LRGY
Sbjct:    1 MPQFDTMTFFNQVFWLVVIVFNFYVVVVRFMLPPLAFSLKSRNKNLRLTDDPRLRGY 57          
BLAST of mRNA_H-elongata_contig186972.5093.1 vs. uniprot
Match: A0A8F0FCZ2_9PHAE (ATPase subunit 8 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0FCZ2_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 5.600e-27
Identity = 50/57 (87.72%), Postives = 54/57 (94.74%), Query Frame = 1
Query:    1 MPQFDTMTFFNQVFWLVVIVFNFYVVVVRFMLPPLAFSLKSRNKNLRLTDDPKLRGY 171
            MPQFDTMTFFNQVFWL++IVFNFYVVVVRFMLP LAFSLKSR+KNLRLT+DPK R Y
Sbjct:    1 MPQFDTMTFFNQVFWLILIVFNFYVVVVRFMLPSLAFSLKSRSKNLRLTEDPKSRTY 57          
BLAST of mRNA_H-elongata_contig186972.5093.1 vs. uniprot
Match: A0A8F0K0K4_9PHAE (ATPase subunit 8 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0K0K4_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 8.690e-22
Identity = 42/53 (79.25%), Postives = 50/53 (94.34%), Query Frame = 1
Query:    1 MPQFDTMTFFNQVFWLVVIVFNFYVVVVRFMLPPLAFSLKSRNKNLRLTDDPK 159
            MPQFDT+TFFNQVFWL++IVFN YV+VVRF+LP LAFSLKSRNKNLR+T+D +
Sbjct:    1 MPQFDTLTFFNQVFWLILIVFNSYVIVVRFLLPSLAFSLKSRNKNLRVTNDSR 53          
BLAST of mRNA_H-elongata_contig186972.5093.1 vs. uniprot
Match: A0A2R4QQ70_9PHAE (ATP synthase F0 subunit 8 n=3 Tax=Fucus TaxID=3011 RepID=A0A2R4QQ70_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 9.230e-21
Identity = 40/53 (75.47%), Postives = 48/53 (90.57%), Query Frame = 1
Query:    1 MPQFDTMTFFNQVFWLVVIVFNFYVVVVRFMLPPLAFSLKSRNKNLRLTDDPK 159
            MPQFD MTFFNQVFWL++I+ NFYV+++RFMLP LAFSLKSR KNLRLTD+ +
Sbjct:    1 MPQFDIMTFFNQVFWLIIILLNFYVIILRFMLPSLAFSLKSRYKNLRLTDESR 53          
BLAST of mRNA_H-elongata_contig186972.5093.1 vs. uniprot
Match: A0A0U1XD87_9PHAE (ATP synthase F0 subunit 8 n=1 Tax=Colpomenia peregrina TaxID=27965 RepID=A0A0U1XD87_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 7.980e-20
Identity = 41/48 (85.42%), Postives = 46/48 (95.83%), Query Frame = 1
Query:    1 MPQFDTMTFFNQVFWLVVIVFNFYVVVVRFMLPPLAFSLKSRNKNLRL 144
            MPQFDTMTFFNQVFWL+ IVF+FYV+VVR+MLP LAFSLKSR+KNLRL
Sbjct:    1 MPQFDTMTFFNQVFWLISIVFSFYVIVVRYMLPVLAFSLKSRSKNLRL 48          
BLAST of mRNA_H-elongata_contig186972.5093.1 vs. uniprot
Match: A0A0U1V1N0_SARFS (ATP synthase F0 subunit 8 n=23 Tax=Sargassaceae TaxID=3014 RepID=A0A0U1V1N0_SARFS)

HSP 1 Score: 82.4 bits (202), Expect = 1.080e-19
Identity = 39/53 (73.58%), Postives = 48/53 (90.57%), Query Frame = 1
Query:    1 MPQFDTMTFFNQVFWLVVIVFNFYVVVVRFMLPPLAFSLKSRNKNLRLTDDPK 159
            MPQFDT+TFFNQVFWLV+IVFNFY +++RFMLP LA SLK+RNKNLR T++ +
Sbjct:    1 MPQFDTITFFNQVFWLVLIVFNFYFIILRFMLPSLASSLKARNKNLRYTEESR 53          
BLAST of mRNA_H-elongata_contig186972.5093.1 vs. uniprot
Match: A0A3G5FPM1_9PHAE (ATP synthase F0 subunit 8 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPM1_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.130e-19
Identity = 40/55 (72.73%), Postives = 49/55 (89.09%), Query Frame = 1
Query:    1 MPQFDTMTFFNQVFWLVVIVFNFYVVVVRFMLPPLAFSLKSRNKNLRLTDDPKLR 165
            MPQFDTMTFFNQVFWL+ IVF FY++VVR+MLP +AFSLKSR+KNL+LT   K++
Sbjct:    1 MPQFDTMTFFNQVFWLLNIVFAFYIIVVRYMLPGIAFSLKSRSKNLKLTTTTKIK 55          
BLAST of mRNA_H-elongata_contig186972.5093.1 vs. uniprot
Match: A0A1I9LW72_9PHAE (ATPase subunit 8 n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LW72_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 2.290e-19
Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 1
Query:    1 MPQFDTMTFFNQVFWLVVIVFNFYVVVVRFMLPPLAFSLKSRNKNLRLT 147
            MPQFDTMTFFNQVFWL+ I+F FYV++VR+MLP LAFSLKSR+KN RLT
Sbjct:    1 MPQFDTMTFFNQVFWLISIIFTFYVIIVRYMLPSLAFSLKSRSKNQRLT 49          
BLAST of mRNA_H-elongata_contig186972.5093.1 vs. uniprot
Match: O78795_PYLLI (ATPase subunit 8 n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=O78795_PYLLI)

HSP 1 Score: 80.5 bits (197), Expect = 6.570e-19
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 1
Query:    1 MPQFDTMTFFNQVFWLVVIVFNFYVVVVRFMLPPLAFSLKSRNKNLRLTDDP 156
            MPQFDTMTFFNQVFWLV IVF FY+ VVR+MLP LAFSLKSR+KNL+L   P
Sbjct:    1 MPQFDTMTFFNQVFWLVSIVFAFYMTVVRYMLPVLAFSLKSRSKNLKLATTP 52          
BLAST of mRNA_H-elongata_contig186972.5093.1 vs. uniprot
Match: A0A8F0FD46_9PHAE (ATPase subunit 8 n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0FD46_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 6.570e-19
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 1
Query:    1 MPQFDTMTFFNQVFWLVVIVFNFYVVVVRFMLPPLAFSLKSRNKNLRLTDDPK 159
            MPQFD MTFFNQ FWL+++VFNFY VV+RF+LP LAFSLKSRNK LR+T++ +
Sbjct:    1 MPQFDIMTFFNQAFWLILLVFNFYAVVLRFLLPSLAFSLKSRNKVLRVTEESR 53          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig186972.5093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q2TUD8_9PHAE7.290e-3298.25ATPase subunit 8 n=2 Tax=Desmarestia TaxID=31339 R... [more]
A0A8F0FCZ2_9PHAE5.600e-2787.72ATPase subunit 8 n=2 Tax=Laminariales TaxID=2886 R... [more]
A0A8F0K0K4_9PHAE8.690e-2279.25ATPase subunit 8 n=1 Tax=Chorda asiatica TaxID=128... [more]
A0A2R4QQ70_9PHAE9.230e-2175.47ATP synthase F0 subunit 8 n=3 Tax=Fucus TaxID=3011... [more]
A0A0U1XD87_9PHAE7.980e-2085.42ATP synthase F0 subunit 8 n=1 Tax=Colpomenia pereg... [more]
A0A0U1V1N0_SARFS1.080e-1973.58ATP synthase F0 subunit 8 n=23 Tax=Sargassaceae Ta... [more]
A0A3G5FPM1_9PHAE1.130e-1972.73ATP synthase F0 subunit 8 n=1 Tax=Cladosiphon okam... [more]
A0A1I9LW72_9PHAE2.290e-1979.59ATPase subunit 8 n=1 Tax=Pleurocladia lacustris Ta... [more]
O78795_PYLLI6.570e-1978.85ATPase subunit 8 n=1 Tax=Pylaiella littoralis TaxI... [more]
A0A8F0FD46_9PHAE6.570e-1971.70ATPase subunit 8 n=1 Tax=Analipus japonicus TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig186972contigH-elongata_contig186972:198..371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size174
Cds size174
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930069.0542448-CDS-H-elongata_contig186972:197..3711622930069.0542448-CDS-H-elongata_contig186972:197..371Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186972 198..371 -
1691679268.9074187-CDS-H-elongata_contig186972:197..3711691679268.9074187-CDS-H-elongata_contig186972:197..371Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186972 198..371 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig186972.5093.1prot_H-elongata_contig186972.5093.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig186972 198..371 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig186972.5093.1

>prot_H-elongata_contig186972.5093.1 ID=prot_H-elongata_contig186972.5093.1|Name=mRNA_H-elongata_contig186972.5093.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
MPQFDTMTFFNQVFWLVVIVFNFYVVVVRFMLPPLAFSLKSRNKNLRLTD
DPKLRGY*
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mRNA from alignment at H-elongata_contig186972:198..371-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig186972.5093.1 ID=mRNA_H-elongata_contig186972.5093.1|Name=mRNA_H-elongata_contig186972.5093.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig186972:198..371- (Himanthalia elongata Himel1 dioecious)
ATGCCTCAATTCGACACAATGACTTTTTTTAACCAAGTTTTTTGGTTAGT AGTAATCGTTTTTAATTTTTATGTAGTAGTAGTTCGTTTTATGCTGCCTC CTTTAGCGTTTAGTCTGAAATCTCGAAATAAAAATTTGAGGCTGACGGAT GATCCTAAGTTGCGTGGATACTAA
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Coding sequence (CDS) from alignment at H-elongata_contig186972:198..371-

>mRNA_H-elongata_contig186972.5093.1 ID=mRNA_H-elongata_contig186972.5093.1|Name=mRNA_H-elongata_contig186972.5093.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig186972:198..371- (Himanthalia elongata Himel1 dioecious)
ATGCCTCAATTCGACACAATGACTTTTTTTAACCAAGTTTTTTGGTTAGT
AGTAATCGTTTTTAATTTTTATGTAGTAGTAGTTCGTTTTATGCTGCCTC
CTTTAGCGTTTAGTCTGAAATCTCGAAATAAAAATTTGAGGCTGACGGAT
GATCCTAAGTTGCGTGGATACTAAATGCCTCAATTCGACACAATGACTTT
TTTTAACCAAGTTTTTTGGTTAGTAGTAATCGTTTTTAATTTTTATGTAG
TAGTAGTTCGTTTTATGCTGCCTCCTTTAGCGTTTAGTCTGAAATCTCGA
AATAAAAATTTGAGGCTGACGGATGATCCTAAGTTGCGTGGATACTAA
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