mRNA_H-elongata_contig18692.5089.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18692.5089.1
Unique NamemRNA_H-elongata_contig18692.5089.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18692.5089.1 vs. uniprot
Match: D7FW85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW85_ECTSI)

HSP 1 Score: 296 bits (759), Expect = 1.830e-91
Identity = 159/284 (55.99%), Postives = 197/284 (69.37%), Query Frame = 1 
Query:    1 ERERDRVAWLAWDEGFRAGEKFCVGDSGAADESVAWLNHLIGGVWGGHLTGPHARQTSVSGTRSSSANRFVF----------EGLRSFVSEQLAANIAEALEEFNSKSTNVVRVELQEVDLGSSSPQILGVKVLDPVASAAPGWGDGRCGTLGGDCVALRIDLEVATRGLRVGVVVKPSTRGDKALLPTGTVRLLELYLRGSLSVRVELRKEFPFVGMALVAFDGEPDVQVRMEQWGLDALTLG----AVDEWARVGLQGALKPFLLPGYLEVDAAHALCPDCP 810
            ERERDR AWLAWDEG+R G+     D  A  E+ AWLNH++   WGG         T  +G    +  R V           +GL SFV+E L     E LEE   K T+VV VEL +V+LGSS+PQILG+ +LDP +SA+PGWGDGRC   G +C++ R+DLEVA   LRVGV VK S+  +KALLPTGTVRLLEL+ RGS+SVR ELR EFPFV  AL+AFD  PDVQ+++EQWGLDAL+LG    AVDEWAR+ LQ A+ P+++PG++EVDAA A+CPDCP
Sbjct:  392 ERERDRAAWLAWDEGYRRGQASRALDPAAEAETTAWLNHILASAWGGTK---RVVPTGFAGVNGIAGGRDVHGCVVTGMLAADGLSSFVAEHLTEGFLEVLEEM--KPTSVVGVELLDVELGSSAPQILGITMLDPTSSASPGWGDGRCNHEG-ECLSFRVDLEVAAPDLRVGVRVKVSSL-EKALLPTGTVRLLELFFRGSMSVRAELRPEFPFVKTALIAFDDPPDVQIKLEQWGLDALSLGTVPAAVDEWARMALQQAISPYVMPGFIEVDAASAICPDCP 668
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BLAST of mRNA_H-elongata_contig18692.5089.1 vs. uniprot
Match: A0A6H5L2G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2G9_9PHAE)

HSP 1 Score: 295 bits (754), Expect = 2.260e-91
Identity = 157/281 (55.87%), Postives = 197/281 (70.11%), Query Frame = 1 
Query:    1 ERERDRVAWLAWDEGFRAGEKFCVGDSGAADESVAWLNHLIGGVWGGH---LTGPHARQTSVSGTRSSSA----NRFVFEGLRSFVSEQLAANIAEALEEFNSKSTNVVRVELQEVDLGSSSPQILGVKVLDPVASAAPGWGDGRCGTLGGDCVALRIDLEVATRGLRVGVVVKPSTRGDKALLPTGTVRLLELYLRGSLSVRVELRKEFPFVGMALVAFDGEPDVQVRMEQWGLDALTLG----AVDEWARVGLQGALKPFLLPGYLEVDAAHALCPDCP 810
            ERERDR AWLAWDEG+R G+     D  A  E+ AWLNH++   WGG    +    A    ++G R             +G+ SFV+E L     E LEE   K T+VV VEL +V+LGSS+PQILG+ +LDP +SA+PGWGDGRC +  G+C++ R+DLEVA   LRVGV VK S+  +KALLPTGTVRLLEL+ RGS+SVR ELR EFPFV   L+AFD  PDVQV++EQWGLDAL+LG    AVDEWAR+ LQ A+ P+++PG++EVDAA A+CPDCP
Sbjct:  319 ERERDRAAWLAWDEGYRRGQASRALDPAAEAETTAWLNHILASAWGGTKRVVPRGFAGVNGIAGGRDVHGCVVTGMLAADGMSSFVAEHLTEGFVEVLEEM--KPTSVVGVELLDVELGSSAPQILGITMLDPTSSASPGWGDGRC-SHEGECLSFRVDLEVAAPDLRVGVRVKVSSL-EKALLPTGTVRLLELFFRGSMSVRAELRPEFPFVKTVLIAFDDPPDVQVKLEQWGLDALSLGTVPAAVDEWARMALQQAISPYVMPGFIEVDAASAICPDCP 595
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18692.5089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW85_ECTSI1.830e-9155.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2G9_9PHAE2.260e-9155.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18692contigH-elongata_contig18692:182..1907 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_003770.1
Exons5
Model size810
Cds size810
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18692.5089.1prot_H-elongata_contig18692.5089.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18692 182..1907 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930068.599447-CDS-H-elongata_contig18692:181..4231622930068.599447-CDS-H-elongata_contig18692:181..423Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18692 182..423 +
1691679268.7952874-CDS-H-elongata_contig18692:181..4231691679268.7952874-CDS-H-elongata_contig18692:181..423Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18692 182..423 +
1622930068.6242278-CDS-H-elongata_contig18692:693..8171622930068.6242278-CDS-H-elongata_contig18692:693..817Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18692 694..817 +
1691679268.8027556-CDS-H-elongata_contig18692:693..8171691679268.8027556-CDS-H-elongata_contig18692:693..817Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18692 694..817 +
1622930068.6388528-CDS-H-elongata_contig18692:1051..13091622930068.6388528-CDS-H-elongata_contig18692:1051..1309Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18692 1052..1309 +
1691679268.8102322-CDS-H-elongata_contig18692:1051..13091691679268.8102322-CDS-H-elongata_contig18692:1051..1309Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18692 1052..1309 +
1622930068.6543603-CDS-H-elongata_contig18692:1477..16171622930068.6543603-CDS-H-elongata_contig18692:1477..1617Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18692 1478..1617 +
1691679268.8176665-CDS-H-elongata_contig18692:1477..16171691679268.8176665-CDS-H-elongata_contig18692:1477..1617Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18692 1478..1617 +
1622930068.6822548-CDS-H-elongata_contig18692:1861..19071622930068.6822548-CDS-H-elongata_contig18692:1861..1907Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18692 1862..1907 +
1691679268.8249767-CDS-H-elongata_contig18692:1861..19071691679268.8249767-CDS-H-elongata_contig18692:1861..1907Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18692 1862..1907 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18692.5089.1

>prot_H-elongata_contig18692.5089.1 ID=prot_H-elongata_contig18692.5089.1|Name=mRNA_H-elongata_contig18692.5089.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=270bp
ERERDRVAWLAWDEGFRAGEKFCVGDSGAADESVAWLNHLIGGVWGGHLT
GPHARQTSVSGTRSSSANRFVFEGLRSFVSEQLAANIAEALEEFNSKSTN
VVRVELQEVDLGSSSPQILGVKVLDPVASAAPGWGDGRCGTLGGDCVALR
IDLEVATRGLRVGVVVKPSTRGDKALLPTGTVRLLELYLRGSLSVRVELR
KEFPFVGMALVAFDGEPDVQVRMEQWGLDALTLGAVDEWARVGLQGALKP
FLLPGYLEVDAAHALCPDCP
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mRNA from alignment at H-elongata_contig18692:182..1907+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18692.5089.1 ID=mRNA_H-elongata_contig18692.5089.1|Name=mRNA_H-elongata_contig18692.5089.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1726bp|location=Sequence derived from alignment at H-elongata_contig18692:182..1907+ (Himanthalia elongata Himel1 dioecious)
GAAAGGGAACGGGACCGCGTGGCGTGGTTGGCGTGGGACGAGGGTTTCCG
TGCAGGAGAGAAATTTTGCGTCGGGGATTCTGGCGCGGCGGATGAAAGCG
TGGCATGGCTGAATCATCTTATAGGCGGCGTGTGGGGAGGCCACCTAACA
GGGCCGCACGCTAGACAGACTAGTGTCAGCGGCACGAGGAGTAGTAGCGC
TAATAGATTCGTTTTCGAGGGGCTAAGGTCATTCGTCTCCGAGTGAGTGC
TGATACCCCGAACGAGTTTCTGCCCATGTTACCCTGATCGCCTTCAAGTA
TATATATATATATAATTTTATTTTCGGCGGCACGGTGTAAATATATATTT
TTTTCGTGTAAAATCCGTGAAGGAAGGCAATTGTAGAAGAGGGTTTATTC
AACCACAACCGCAACTGCGAGCAAAACACCTGGAACTGCGGTTTTGCGTC
ATCGAGCTCTTTGCGACTTTTTGCCATTTCCTCCTCCCCCTCTTTCTCTT
TTGATGTAACAGGCAGTTGGCGGCGAACATCGCCGAGGCTCTCGAGGAGT
TCAACTCGAAGTCAACGAACGTCGTGAGGGTCGAACTTCAGGAGGTCGAC
CTCGGCTCGTCTTCACCTCAAATCCTCGGCGTCAAGGTGCGAGTGTCAGG
CCAGCGATTCTACAAGCCCTCGAGCTGCAGCTAGGGAAATAGGAGGATAT
GGAGTATACGTTGATTCCCTTTTCCGCACGCCATCGGAAATAACAAACTA
CACCGATACGTACCGATGCTTAATCCCCACGTGTTCGCACATCAGCACTC
GGCGAGCACATAAGACAAGTCCCCCTCGCCTTCCTCGATCCATTCTCTGC
GGTGGTCACGTTGACCGCAGGTGCTCGACCCCGTGGCTTCTGCTGCGCCC
GGTTGGGGCGACGGTCGATGCGGCACCCTGGGGGGGGACTGTGTAGCTCT
CCGAATCGACCTTGAAGTCGCGACGCGGGGACTTCGGGTGGGCGTCGTGG
TAAAACCGTCCACGCGCGGCGATAAGGCGTTACTGCCGACGGGGACGGTC
CGACTGCTTGAGCTCTACCTGAGGGGAAGCCTTTCGGTTCGCGTGGAGCT
GAGAAAAGAGTTCCCGTTTGTGGGCATGGTGAGATTGTATGTTTCGTCCT
GGCGCCTGAAGTTGCCCGTTTGTGTTCGTGTGTGTGTATATATTGGTTTG
TTTTTAATGCTTAATTTTATTTTTATGAGACGCCTCTCTTGCTACAAGCA
AAATGAGCCAACCAGGACACCGAACCTGCGCCACCGAGGAAAGCAGGCAT
TGGTTGCATTCGACGGAGAACCGGACGTGCAGGTCCGGATGGAGCAGTGG
GGTCTTGATGCTCTTACCCTCGGCGCCGTGGACGAGTGGGCCCGAGTCGG
GTTGCAAGGCGCTTTGAAGCCCTTTCTACTTCCGGGGTGAGGAGATACAT
TTGGTGTAATTTCGGTGTGTGTTTCTCTATGTGCCAAAATCCCATTTTCT
GCTAACTTCGTGTCAGTCTAAGGCCTATCCGCCTAACCCCCTGGGAGAAA
TGCTCGACCCCTCGCCTGTTTCCGTTGCTGCTCTTAACGTGACGGTGCTG
CATCGTACGACATATCACCGTCGATCACCTGCGGCCGAAATACCCGCCCA
TCTCGCTACTCGTACCTATCGGACGACCAGGTATCTGGAGGTGGACGCCG
CGCACGCCTTATGCCCGGATTGCCCC
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Coding sequence (CDS) from alignment at H-elongata_contig18692:182..1907+

>mRNA_H-elongata_contig18692.5089.1 ID=mRNA_H-elongata_contig18692.5089.1|Name=mRNA_H-elongata_contig18692.5089.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1620bp|location=Sequence derived from alignment at H-elongata_contig18692:182..1907+ (Himanthalia elongata Himel1 dioecious)
GAAAGGGAACGGGACCGCGTGGCGTGGTTGGCGTGGGACGAGGGTTTCCG
TGCAGGAGAGAAATTTTGCGTCGGGGATTCTGGCGCGGCGGATGAAAGCG
TGGCATGGCTGAATCATCTTATAGGCGGCGTGTGGGGAGGCCACCTAACA
GGGCCGCACGCTAGACAGACTAGTGTCAGCGGCACGAGGAGTAGTAGCGC
TAATAGATTCGTTTTCGAGGGGCTAAGGTCATTCGTCTCCGAGAAAGGGA
ACGGGACCGCGTGGCGTGGTTGGCGTGGGACGAGGGTTTCCGTGCAGGAG
AGAAATTTTGCGTCGGGGATTCTGGCGCGGCGGATGAAAGCGTGGCATGG
CTGAATCATCTTATAGGCGGCGTGTGGGGAGGCCACCTAACAGGGCCGCA
CGCTAGACAGACTAGTGTCAGCGGCACGAGGAGTAGTAGCGCTAATAGAT
TCGTTTTCGAGGGGCTAAGGTCATTCGTCTCCGAGCAGTTGGCGGCGAAC
ATCGCCGAGGCTCTCGAGGAGTTCAACTCGAAGTCAACGAACGTCGTGAG
GGTCGAACTTCAGGAGGTCGACCTCGGCTCGTCTTCACCTCAAATCCTCG
GCGTCAAGGCAGTTGGCGGCGAACATCGCCGAGGCTCTCGAGGAGTTCAA
CTCGAAGTCAACGAACGTCGTGAGGGTCGAACTTCAGGAGGTCGACCTCG
GCTCGTCTTCACCTCAAATCCTCGGCGTCAAGGTGCTCGACCCCGTGGCT
TCTGCTGCGCCCGGTTGGGGCGACGGTCGATGCGGCACCCTGGGGGGGGA
CTGTGTAGCTCTCCGAATCGACCTTGAAGTCGCGACGCGGGGACTTCGGG
TGGGCGTCGTGGTAAAACCGTCCACGCGCGGCGATAAGGCGTTACTGCCG
ACGGGGACGGTCCGACTGCTTGAGCTCTACCTGAGGGGAAGCCTTTCGGT
TCGCGTGGAGCTGAGAAAAGAGTTCCCGTTTGTGGGCATGGTGCTCGACC
CCGTGGCTTCTGCTGCGCCCGGTTGGGGCGACGGTCGATGCGGCACCCTG
GGGGGGGACTGTGTAGCTCTCCGAATCGACCTTGAAGTCGCGACGCGGGG
ACTTCGGGTGGGCGTCGTGGTAAAACCGTCCACGCGCGGCGATAAGGCGT
TACTGCCGACGGGGACGGTCCGACTGCTTGAGCTCTACCTGAGGGGAAGC
CTTTCGGTTCGCGTGGAGCTGAGAAAAGAGTTCCCGTTTGTGGGCATGGC
ATTGGTTGCATTCGACGGAGAACCGGACGTGCAGGTCCGGATGGAGCAGT
GGGGTCTTGATGCTCTTACCCTCGGCGCCGTGGACGAGTGGGCCCGAGTC
GGGTTGCAAGGCGCTTTGAAGCCCTTTCTACTTCCGGGGCATTGGTTGCA
TTCGACGGAGAACCGGACGTGCAGGTCCGGATGGAGCAGTGGGGTCTTGA
TGCTCTTACCCTCGGCGCCGTGGACGAGTGGGCCCGAGTCGGGTTGCAAG
GCGCTTTGAAGCCCTTTCTACTTCCGGGGTATCTGGAGGTGGACGCCGCG
CACGCCTTATGCCCGGATTGCCCCGTATCTGGAGGTGGACGCCGCGCACG
CCTTATGCCCGGATTGCCCC
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