mRNA_H-elongata_contig186892.5088.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig186892.5088.1
Unique NamemRNA_H-elongata_contig186892.5088.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig186892.5088.1 vs. uniprot
Match: D7FP08_ECTSI (C-CAP/cofactor C-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP08_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 4.290e-16
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:    4 RDLQVNYCQESYVYVLTAVRYATVLGCKDCTVVIGAAAGMVR 129
            RDLQVN CQESYVYVL+AVR+ATV+GCKDCTVVIGAAAGMVR
Sbjct:  119 RDLQVNCCQESYVYVLSAVRFATVMGCKDCTVVIGAAAGMVR 160
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BLAST of mRNA_H-elongata_contig186892.5088.1 vs. uniprot
Match: A0A835Z1R1_9STRA (Tubulin binding cofactor C-domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1R1_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 9.560e-11
Identity = 28/42 (66.67%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    4 RDLQVNYCQESYVYVLTAVRYATVLGCKDCTVVIGAAAGMVR 129
            R LQV++C ESYVY+L   +YATVLGC +CT+V+GAAAG+VR
Sbjct:  366 RSLQVSHCHESYVYMLAPFQYATVLGCSECTIVVGAAAGVVR 407
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BLAST of mRNA_H-elongata_contig186892.5088.1 vs. uniprot
Match: A0A835YHX7_9STRA (Tubulin binding cofactor C-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHX7_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.560e-9
Identity = 24/42 (57.14%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    4 RDLQVNYCQESYVYVLTAVRYATVLGCKDCTVVIGAAAGMVR 129
            R LQ+N C ESY+YVL  +R+AT++GC DCT+V+GA  G +R
Sbjct:  437 RQLQINQCHESYMYVLAPLRHATIVGCTDCTIVVGAVRGALR 478
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BLAST of mRNA_H-elongata_contig186892.5088.1 vs. uniprot
Match: A0A7S3XVC9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVC9_HETAK)

HSP 1 Score: 57.0 bits (136), Expect = 2.290e-8
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    4 RDLQVNYCQESYVYVLTAVRYATVLGCKDCTVVIGAAAGMVR 129
            R + VN+C +SY+Y+L A + ATVLGC DCTVVIGA +GMV 
Sbjct:  140 RAVHVNHCHDSYIYLLGAFKSATVLGCTDCTVVIGAISGMVN 181
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BLAST of mRNA_H-elongata_contig186892.5088.1 vs. uniprot
Match: A0A4P1QVK6_LUPAN (TBCC domain-containing protein 1 n=4 Tax=Lupinus TaxID=3869 RepID=A0A4P1QVK6_LUPAN)

HSP 1 Score: 47.0 bits (110), Expect = 9.180e-5
Identity = 22/41 (53.66%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:    7 DLQVNYCQESYVYVLTAVRYATVLGCKDCTVVIGAAAGMVR 129
             ++V  CQES +YVL  +RYATV GC D T+V+GA    VR
Sbjct:  341 SIKVLNCQESAIYVLAPLRYATVYGCSDATIVLGAVGKAVR 381
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig186892.5088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FP08_ECTSI4.290e-1690.48C-CAP/cofactor C-like domain-containing protein n=... [more]
A0A835Z1R1_9STRA9.560e-1166.67Tubulin binding cofactor C-domain-containing prote... [more]
A0A835YHX7_9STRA5.560e-957.14Tubulin binding cofactor C-domain-containing prote... [more]
A0A7S3XVC9_HETAK2.290e-861.90Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A4P1QVK6_LUPAN9.180e-553.66TBCC domain-containing protein 1 n=4 Tax=Lupinus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig186892contigH-elongata_contig186892:355..483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue1.8e-12
Seed eggNOG ortholog2880.D7FP08
Preferred nameTBCCD1
KEGG koko:K16810
GOsGO:0000922,GO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0008150,GO:0008360,GO:0009987,GO:0015630,GO:0022603,GO:0022604,GO:0030334,GO:0031616,GO:0032879,GO:0040012,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051179,GO:0051235,GO:0051270,GO:0051640,GO:0051641,GO:0051642,GO:0051645,GO:0051651,GO:0051657,GO:0051661,GO:0051684,GO:0061842,GO:0065007,GO:0065008,GO:2000145
EggNOG free text desc.maintenance of Golgi location
EggNOG OGsKOG4416@1,KOG4416@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size129
Cds size129
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930068.5290384-CDS-H-elongata_contig186892:354..4831622930068.5290384-CDS-H-elongata_contig186892:354..483Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186892 355..483 +
1691679268.7816103-CDS-H-elongata_contig186892:354..4831691679268.7816103-CDS-H-elongata_contig186892:354..483Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186892 355..483 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig186892.5088.1prot_H-elongata_contig186892.5088.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig186892 355..483 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig186892.5088.1

>prot_H-elongata_contig186892.5088.1 ID=prot_H-elongata_contig186892.5088.1|Name=mRNA_H-elongata_contig186892.5088.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=43bp
NRDLQVNYCQESYVYVLTAVRYATVLGCKDCTVVIGAAAGMVR
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mRNA from alignment at H-elongata_contig186892:355..483+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig186892.5088.1 ID=mRNA_H-elongata_contig186892.5088.1|Name=mRNA_H-elongata_contig186892.5088.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=129bp|location=Sequence derived from alignment at H-elongata_contig186892:355..483+ (Himanthalia elongata Himel1 dioecious)
AATAGGGACCTGCAGGTGAACTACTGCCAGGAGTCGTACGTGTACGTTCT
GACGGCCGTACGATATGCGACGGTCCTCGGCTGCAAGGACTGCACGGTCG
TCATCGGGGCCGCGGCCGGCATGGTGCGA
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Coding sequence (CDS) from alignment at H-elongata_contig186892:355..483+

>mRNA_H-elongata_contig186892.5088.1 ID=mRNA_H-elongata_contig186892.5088.1|Name=mRNA_H-elongata_contig186892.5088.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at H-elongata_contig186892:355..483+ (Himanthalia elongata Himel1 dioecious)
AATAGGGACCTGCAGGTGAACTACTGCCAGGAGTCGTACGTGTACGTTCT
GACGGCCGTACGATATGCGACGGTCCTCGGCTGCAAGGACTGCACGGTCG
TCATCGGGGCCGCGGCCGGCATGGTGCGAAATAGGGACCTGCAGGTGAAC
TACTGCCAGGAGTCGTACGTGTACGTTCTGACGGCCGTACGATATGCGAC
GGTCCTCGGCTGCAAGGACTGCACGGTCGTCATCGGGGCCGCGGCCGGCA
TGGTGCGA
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