mRNA_H-elongata_contig186580.5082.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig186580.5082.1
Unique NamemRNA_H-elongata_contig186580.5082.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig186580.5082.1 vs. uniprot
Match: A0A6H5JZ76_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZ76_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 2.610e-47
Identity = 77/86 (89.53%), Postives = 84/86 (97.67%), Query Frame = 1 
Query:    1 QLCSVSLSNNNVYACLVCGKYYQGRGRNTHAYTHSVQHGHHVFINLRTCRVYCLPDSYEVLDSSLEDIKRALDPRFSPDAIVALDK 258
            +LCS+SLSNNNVYACLVCGKY+QGRGRNTHAYTHSVQ+GHHVFINLRTCRVYCLPDSYEV+DSSLEDIKRALDPR+SP+ I ALDK
Sbjct:  103 KLCSISLSNNNVYACLVCGKYFQGRGRNTHAYTHSVQNGHHVFINLRTCRVYCLPDSYEVVDSSLEDIKRALDPRYSPECIAALDK 188
[Close]
BLAST of mRNA_H-elongata_contig186580.5082.1 vs. uniprot
Match: UPI00077B0850 (U4/U6.U5 tri-snRNP-associated protein 2-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077B0850)

HSP 1 Score: 136 bits (342), Expect = 1.860e-36
Identity = 63/86 (73.26%), Postives = 75/86 (87.21%), Query Frame = 1 
Query:    1 QLCSVSLSNNNVYACLVCGKYYQGRGRNTHAYTHSVQHGHHVFINLRTCRVYCLPDSYEVLDSSLEDIKRALDPRFSPDAIVALDK 258
            +LCSVSLS+ NVYACLVCGKY+QGRGR +HAYTHSVQ GHHVF+NLRT + YCLPD+YEV+DSSL+DIK  L+P F+ D I+ LDK
Sbjct:   60 KLCSVSLSHINVYACLVCGKYFQGRGRRSHAYTHSVQVGHHVFLNLRTLKFYCLPDNYEVIDSSLDDIKYVLNPTFAKDEILQLDK 145
[Close]
BLAST of mRNA_H-elongata_contig186580.5082.1 vs. uniprot
Match: A0A6S7FRC5_PARCT (U4 tri-snRNP-associated 2 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7FRC5_PARCT)

HSP 1 Score: 130 bits (328), Expect = 5.020e-36
Identity = 58/86 (67.44%), Postives = 72/86 (83.72%), Query Frame = 1 
Query:    1 QLCSVSLSNNNVYACLVCGKYYQGRGRNTHAYTHSVQHGHHVFINLRTCRVYCLPDSYEVLDSSLEDIKRALDPRFSPDAIVALDK 258
            +LCS+SLS+ NVYACLVCGKY+QGRG+++HAYTHSVQ GHHVF+NL T + YCLPD+YEV+DSSL+DIK  L+P F    +  LDK
Sbjct:   59 KLCSISLSHTNVYACLVCGKYFQGRGKHSHAYTHSVQVGHHVFLNLHTLKFYCLPDNYEVIDSSLDDIKYVLNPTFEKSEVAQLDK 144
[Close]
BLAST of mRNA_H-elongata_contig186580.5082.1 vs. uniprot
Match: UPI001CF3C8C4 (U4/U6.U5 tri-snRNP-associated protein 2-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF3C8C4)

HSP 1 Score: 136 bits (342), Expect = 5.630e-36
Identity = 63/86 (73.26%), Postives = 75/86 (87.21%), Query Frame = 1 
Query:    1 QLCSVSLSNNNVYACLVCGKYYQGRGRNTHAYTHSVQHGHHVFINLRTCRVYCLPDSYEVLDSSLEDIKRALDPRFSPDAIVALDK 258
            +LCSVSLS+ NVYACLVCGKY+QGRGR +HAYTHSVQ GHHVF+NLRT + YCLPD+YEV+DSSL+DIK  L+P F+ D I+ LDK
Sbjct:   60 KLCSVSLSHINVYACLVCGKYFQGRGRRSHAYTHSVQVGHHVFLNLRTLKFYCLPDNYEVIDSSLDDIKYVLNPTFAKDEILQLDK 145
[Close]
BLAST of mRNA_H-elongata_contig186580.5082.1 vs. uniprot
Match: A0A0N0PFT4_PAPMA (U4/U6.U5 tri-snRNP-associated protein 2 n=1 Tax=Papilio machaon TaxID=76193 RepID=A0A0N0PFT4_PAPMA)

HSP 1 Score: 129 bits (325), Expect = 5.930e-36
Identity = 60/85 (70.59%), Postives = 70/85 (82.35%), Query Frame = 1 
Query:    1 QLCSVSLSNNNVYACLVCGKYYQGRGRNTHAYTHSVQHGHHVFINLRTCRVYCLPDSYEVLDSSLEDIKRALDPRFSPDAIVALD 255
            +LCSVSL+  NVYACLVCGKY+QGRG NTHAYTHSV  GHHVF+NL T + YCLPD+YEV+DSSL DIK  L+P F+P+ I  LD
Sbjct:   48 KLCSVSLTRINVYACLVCGKYFQGRGTNTHAYTHSVADGHHVFLNLHTLKFYCLPDNYEVIDSSLNDIKYVLNPIFTPEQIKQLD 132
[Close]
BLAST of mRNA_H-elongata_contig186580.5082.1 vs. uniprot
Match: A0A7I8JKN2_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8JKN2_SPIIN)

HSP 1 Score: 133 bits (335), Expect = 8.180e-36
Identity = 59/86 (68.60%), Postives = 74/86 (86.05%), Query Frame = 1 
Query:    1 QLCSVSLSNNNVYACLVCGKYYQGRGRNTHAYTHSVQHGHHVFINLRTCRVYCLPDSYEVLDSSLEDIKRALDPRFSPDAIVALDK 258
            + CSVSLSN NVYACLVCGKYYQGRGRN+HAYTHS++ GHHV+INL+T RVYCLPD YE++D SL+DI+  L+PRF  + ++ LD+
Sbjct:   10 KFCSVSLSNLNVYACLVCGKYYQGRGRNSHAYTHSLEAGHHVYINLQTERVYCLPDGYEIMDPSLDDIRHVLNPRFQKEQVLHLDE 95
[Close]
BLAST of mRNA_H-elongata_contig186580.5082.1 vs. uniprot
Match: A0A835Z9Q1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Q1_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.180e-35
Identity = 61/83 (73.49%), Postives = 74/83 (89.16%), Query Frame = 1 
Query:   10 SVSLSNNNVYACLVCGKYYQGRGRNTHAYTHSVQHGHHVFINLRTCRVYCLPDSYEVLDSSLEDIKRALDPRFSPDAIVALDK 258
            SV+LSN NVYACLVCGKY+QGRGR+THAYTHSVQH HHVFI+L T ++YCLPD+YEV+DSSL+DIKRAL P ++P  + ALD+
Sbjct:    9 SVTLSNQNVYACLVCGKYFQGRGRSTHAYTHSVQHSHHVFIHLETSKIYCLPDNYEVVDSSLDDIKRALFPSYAPRDMAALDR 91
[Close]
BLAST of mRNA_H-elongata_contig186580.5082.1 vs. uniprot
Match: S8C2M8_9LAMI (Uncharacterized protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8C2M8_9LAMI)

HSP 1 Score: 132 bits (331), Expect = 1.360e-35
Identity = 59/86 (68.60%), Postives = 73/86 (84.88%), Query Frame = 1 
Query:    1 QLCSVSLSNNNVYACLVCGKYYQGRGRNTHAYTHSVQHGHHVFINLRTCRVYCLPDSYEVLDSSLEDIKRALDPRFSPDAIVALDK 258
            + CSVSLSN NVYACLVCGKYYQGRG  +HAYTHS++ GHHV+INLRT +VYCLPD YEV+D SL+DI+  L+PRF+ + ++ LDK
Sbjct:   96 KFCSVSLSNLNVYACLVCGKYYQGRGHKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEVIDPSLDDIRNVLNPRFTREQVLQLDK 181
[Close]
BLAST of mRNA_H-elongata_contig186580.5082.1 vs. uniprot
Match: A0A1S3H9G7_LINUN (U4/U6.U5 tri-snRNP-associated protein 2-like n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3H9G7_LINUN)

HSP 1 Score: 132 bits (333), Expect = 2.310e-35
Identity = 61/85 (71.76%), Postives = 72/85 (84.71%), Query Frame = 1 
Query:    1 QLCSVSLSNNNVYACLVCGKYYQGRGRNTHAYTHSVQHGHHVFINLRTCRVYCLPDSYEVLDSSLEDIKRALDPRFSPDAIVALD 255
            +LCSVSLS+ NVYACLVCGKY+QGRG  +HAYTHSVQ GHHVF+NL T + YCLPD+YE++DSSLEDI   L+P F PD IVA+D
Sbjct:   54 KLCSVSLSHLNVYACLVCGKYFQGRGMKSHAYTHSVQDGHHVFLNLETHKFYCLPDNYEIIDSSLEDIIYVLNPTFKPDQIVAMD 138
[Close]
BLAST of mRNA_H-elongata_contig186580.5082.1 vs. uniprot
Match: D5ACN8_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=D5ACN8_PICSI)

HSP 1 Score: 131 bits (330), Expect = 2.410e-35
Identity = 60/87 (68.97%), Postives = 72/87 (82.76%), Query Frame = 1 
Query:    1 QLCSVSLSNNNVYACLVCGKYYQGRGRNTHAYTHSVQHGHHVFINLRTCRVYCLPDSYEVLDSSLEDIKRALDPRFSPDAIVALDKV 261
            + CSVSLSN NVYACLVCGKYYQGRGRN+HAYTHS++ GHHV+INLRT + YCLPD YEV D SL+DI+  L+PRFS + +  LD +
Sbjct:  106 KFCSVSLSNLNVYACLVCGKYYQGRGRNSHAYTHSLEAGHHVYINLRTEKAYCLPDGYEVNDPSLDDIRHVLNPRFSREQVEQLDTI 192
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig186580.5082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZ76_9PHAE2.610e-4789.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI00077B08501.860e-3673.26U4/U6.U5 tri-snRNP-associated protein 2-like n=1 T... [more]
A0A6S7FRC5_PARCT5.020e-3667.44U4 tri-snRNP-associated 2 (Fragment) n=2 Tax=Param... [more]
UPI001CF3C8C45.630e-3673.26U4/U6.U5 tri-snRNP-associated protein 2-like n=1 T... [more]
A0A0N0PFT4_PAPMA5.930e-3670.59U4/U6.U5 tri-snRNP-associated protein 2 n=1 Tax=Pa... [more]
A0A7I8JKN2_SPIIN8.180e-3668.60Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]
A0A835Z9Q1_9STRA1.180e-3573.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
S8C2M8_9LAMI1.360e-3568.60Uncharacterized protein (Fragment) n=1 Tax=Genlise... [more]
A0A1S3H9G7_LINUN2.310e-3571.76U4/U6.U5 tri-snRNP-associated protein 2-like n=1 T... [more]
D5ACN8_PICSI2.410e-3568.97Uncharacterized protein n=1 Tax=Picea sitchensis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig186580contigH-elongata_contig186580:897..1172 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.4
Seed ortholog evalue2e-37
Seed eggNOG ortholog2880.D8LCL6
Preferred nameUSP39
KEGG koko:K12847
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003824,GO:0004842,GO:0004843,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008380,GO:0009056,GO:0009057,GO:0009987,GO:0010467,GO:0010498,GO:0016043,GO:0016070,GO:0016071,GO:0016567,GO:0016579,GO:0016740,GO:0016787,GO:0019538,GO:0019783,GO:0019787,GO:0019941,GO:0022607,GO:0022613,GO:0022618,GO:0030163,GO:0031146,GO:0031974,GO:0031981,GO:0032446,GO:0034622,GO:0034641,GO:0036211,GO:0036459,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0051603,GO:0065003,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0101005,GO:0140096,GO:1901360,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.spliceosomal complex assembly
EggNOG OGsKOG2026@1,KOG2026@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Exons1
Model size276
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930067.9008534-CDS-H-elongata_contig186580:896..11721622930067.9008534-CDS-H-elongata_contig186580:896..1172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186580 897..1172 -
1691679268.488046-CDS-H-elongata_contig186580:896..11721691679268.488046-CDS-H-elongata_contig186580:896..1172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186580 897..1172 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig186580.5082.1prot_H-elongata_contig186580.5082.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig186580 897..1172 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig186580.5082.1

>prot_H-elongata_contig186580.5082.1 ID=prot_H-elongata_contig186580.5082.1|Name=mRNA_H-elongata_contig186580.5082.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
QLCSVSLSNNNVYACLVCGKYYQGRGRNTHAYTHSVQHGHHVFINLRTCR
VYCLPDSYEVLDSSLEDIKRALDPRFSPDAIVALDKVFVVW*
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mRNA from alignment at H-elongata_contig186580:897..1172-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig186580.5082.1 ID=mRNA_H-elongata_contig186580.5082.1|Name=mRNA_H-elongata_contig186580.5082.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=276bp|location=Sequence derived from alignment at H-elongata_contig186580:897..1172- (Himanthalia elongata Himel1 dioecious)
CAGCTGTGCAGTGTCTCTCTCTCCAACAACAACGTGTACGCCTGCCTGGT
GTGTGGCAAGTACTATCAGGGCCGCGGACGCAACACCCATGCCTACACCC
ACAGCGTCCAGCACGGCCACCACGTGTTCATCAACCTCCGAACGTGCAGG
GTCTACTGCCTGCCCGACTCCTACGAGGTGCTGGACTCGTCTCTGGAAGA
CATCAAGCGGGCGCTGGACCCTCGGTTCTCTCCAGACGCGATCGTGGCGC
TCGACAAGGTGTTTGTGGTGTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig186580:897..1172-

>mRNA_H-elongata_contig186580.5082.1 ID=mRNA_H-elongata_contig186580.5082.1|Name=mRNA_H-elongata_contig186580.5082.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig186580:897..1172- (Himanthalia elongata Himel1 dioecious)
CAGCTGTGCAGTGTCTCTCTCTCCAACAACAACGTGTACGCCTGCCTGGT
GTGTGGCAAGTACTATCAGGGCCGCGGACGCAACACCCATGCCTACACCC
ACAGCGTCCAGCACGGCCACCACGTGTTCATCAACCTCCGAACGTGCAGG
GTCTACTGCCTGCCCGACTCCTACGAGGTGCTGGACTCGTCTCTGGAAGA
CATCAAGCGGGCGCTGGACCCTCGGTTCTCTCCAGACGCGATCGTGGCGC
TCGACAAGGTGTTTGTGGTGTGGTGACAGCTGTGCAGTGTCTCTCTCTCC
AACAACAACGTGTACGCCTGCCTGGTGTGTGGCAAGTACTATCAGGGCCG
CGGACGCAACACCCATGCCTACACCCACAGCGTCCAGCACGGCCACCACG
TGTTCATCAACCTCCGAACGTGCAGGGTCTACTGCCTGCCCGACTCCTAC
GAGGTGCTGGACTCGTCTCTGGAAGACATCAAGCGGGCGCTGGACCCTCG
GTTCTCTCCAGACGCGATCGTGGCGCTCGACAAGGTGTTTGTGGTGTGGT
GA
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