prot_H-elongata_contig186580.5082.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig186580.5082.1
Unique Nameprot_H-elongata_contig186580.5082.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length92
Homology
BLAST of mRNA_H-elongata_contig186580.5082.1 vs. uniprot
Match: A0A6H5JZ76_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZ76_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 2.610e-47
Identity = 77/86 (89.53%), Postives = 84/86 (97.67%), Query Frame = 0
Query:    1 QLCSVSLSNNNVYACLVCGKYYQGRGRNTHAYTHSVQHGHHVFINLRTCRVYCLPDSYEVLDSSLEDIKRALDPRFSPDAIVALDK 86
            +LCS+SLSNNNVYACLVCGKY+QGRGRNTHAYTHSVQ+GHHVFINLRTCRVYCLPDSYEV+DSSLEDIKRALDPR+SP+ I ALDK
Sbjct:  103 KLCSISLSNNNVYACLVCGKYFQGRGRNTHAYTHSVQNGHHVFINLRTCRVYCLPDSYEVVDSSLEDIKRALDPRYSPECIAALDK 188          
BLAST of mRNA_H-elongata_contig186580.5082.1 vs. uniprot
Match: UPI00077B0850 (U4/U6.U5 tri-snRNP-associated protein 2-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077B0850)

HSP 1 Score: 136 bits (342), Expect = 1.860e-36
Identity = 63/86 (73.26%), Postives = 75/86 (87.21%), Query Frame = 0
Query:    1 QLCSVSLSNNNVYACLVCGKYYQGRGRNTHAYTHSVQHGHHVFINLRTCRVYCLPDSYEVLDSSLEDIKRALDPRFSPDAIVALDK 86
            +LCSVSLS+ NVYACLVCGKY+QGRGR +HAYTHSVQ GHHVF+NLRT + YCLPD+YEV+DSSL+DIK  L+P F+ D I+ LDK
Sbjct:   60 KLCSVSLSHINVYACLVCGKYFQGRGRRSHAYTHSVQVGHHVFLNLRTLKFYCLPDNYEVIDSSLDDIKYVLNPTFAKDEILQLDK 145          
BLAST of mRNA_H-elongata_contig186580.5082.1 vs. uniprot
Match: A0A6S7FRC5_PARCT (U4 tri-snRNP-associated 2 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7FRC5_PARCT)

HSP 1 Score: 130 bits (328), Expect = 5.020e-36
Identity = 58/86 (67.44%), Postives = 72/86 (83.72%), Query Frame = 0
Query:    1 QLCSVSLSNNNVYACLVCGKYYQGRGRNTHAYTHSVQHGHHVFINLRTCRVYCLPDSYEVLDSSLEDIKRALDPRFSPDAIVALDK 86
            +LCS+SLS+ NVYACLVCGKY+QGRG+++HAYTHSVQ GHHVF+NL T + YCLPD+YEV+DSSL+DIK  L+P F    +  LDK
Sbjct:   59 KLCSISLSHTNVYACLVCGKYFQGRGKHSHAYTHSVQVGHHVFLNLHTLKFYCLPDNYEVIDSSLDDIKYVLNPTFEKSEVAQLDK 144          
BLAST of mRNA_H-elongata_contig186580.5082.1 vs. uniprot
Match: UPI001CF3C8C4 (U4/U6.U5 tri-snRNP-associated protein 2-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF3C8C4)

HSP 1 Score: 136 bits (342), Expect = 5.630e-36
Identity = 63/86 (73.26%), Postives = 75/86 (87.21%), Query Frame = 0
Query:    1 QLCSVSLSNNNVYACLVCGKYYQGRGRNTHAYTHSVQHGHHVFINLRTCRVYCLPDSYEVLDSSLEDIKRALDPRFSPDAIVALDK 86
            +LCSVSLS+ NVYACLVCGKY+QGRGR +HAYTHSVQ GHHVF+NLRT + YCLPD+YEV+DSSL+DIK  L+P F+ D I+ LDK
Sbjct:   60 KLCSVSLSHINVYACLVCGKYFQGRGRRSHAYTHSVQVGHHVFLNLRTLKFYCLPDNYEVIDSSLDDIKYVLNPTFAKDEILQLDK 145          
BLAST of mRNA_H-elongata_contig186580.5082.1 vs. uniprot
Match: A0A0N0PFT4_PAPMA (U4/U6.U5 tri-snRNP-associated protein 2 n=1 Tax=Papilio machaon TaxID=76193 RepID=A0A0N0PFT4_PAPMA)

HSP 1 Score: 129 bits (325), Expect = 5.930e-36
Identity = 60/85 (70.59%), Postives = 70/85 (82.35%), Query Frame = 0
Query:    1 QLCSVSLSNNNVYACLVCGKYYQGRGRNTHAYTHSVQHGHHVFINLRTCRVYCLPDSYEVLDSSLEDIKRALDPRFSPDAIVALD 85
            +LCSVSL+  NVYACLVCGKY+QGRG NTHAYTHSV  GHHVF+NL T + YCLPD+YEV+DSSL DIK  L+P F+P+ I  LD
Sbjct:   48 KLCSVSLTRINVYACLVCGKYFQGRGTNTHAYTHSVADGHHVFLNLHTLKFYCLPDNYEVIDSSLNDIKYVLNPIFTPEQIKQLD 132          
BLAST of mRNA_H-elongata_contig186580.5082.1 vs. uniprot
Match: A0A7I8JKN2_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8JKN2_SPIIN)

HSP 1 Score: 133 bits (335), Expect = 8.180e-36
Identity = 59/86 (68.60%), Postives = 74/86 (86.05%), Query Frame = 0
Query:    1 QLCSVSLSNNNVYACLVCGKYYQGRGRNTHAYTHSVQHGHHVFINLRTCRVYCLPDSYEVLDSSLEDIKRALDPRFSPDAIVALDK 86
            + CSVSLSN NVYACLVCGKYYQGRGRN+HAYTHS++ GHHV+INL+T RVYCLPD YE++D SL+DI+  L+PRF  + ++ LD+
Sbjct:   10 KFCSVSLSNLNVYACLVCGKYYQGRGRNSHAYTHSLEAGHHVYINLQTERVYCLPDGYEIMDPSLDDIRHVLNPRFQKEQVLHLDE 95          
BLAST of mRNA_H-elongata_contig186580.5082.1 vs. uniprot
Match: A0A835Z9Q1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Q1_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.180e-35
Identity = 61/83 (73.49%), Postives = 74/83 (89.16%), Query Frame = 0
Query:    4 SVSLSNNNVYACLVCGKYYQGRGRNTHAYTHSVQHGHHVFINLRTCRVYCLPDSYEVLDSSLEDIKRALDPRFSPDAIVALDK 86
            SV+LSN NVYACLVCGKY+QGRGR+THAYTHSVQH HHVFI+L T ++YCLPD+YEV+DSSL+DIKRAL P ++P  + ALD+
Sbjct:    9 SVTLSNQNVYACLVCGKYFQGRGRSTHAYTHSVQHSHHVFIHLETSKIYCLPDNYEVVDSSLDDIKRALFPSYAPRDMAALDR 91          
BLAST of mRNA_H-elongata_contig186580.5082.1 vs. uniprot
Match: S8C2M8_9LAMI (Uncharacterized protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8C2M8_9LAMI)

HSP 1 Score: 132 bits (331), Expect = 1.360e-35
Identity = 59/86 (68.60%), Postives = 73/86 (84.88%), Query Frame = 0
Query:    1 QLCSVSLSNNNVYACLVCGKYYQGRGRNTHAYTHSVQHGHHVFINLRTCRVYCLPDSYEVLDSSLEDIKRALDPRFSPDAIVALDK 86
            + CSVSLSN NVYACLVCGKYYQGRG  +HAYTHS++ GHHV+INLRT +VYCLPD YEV+D SL+DI+  L+PRF+ + ++ LDK
Sbjct:   96 KFCSVSLSNLNVYACLVCGKYYQGRGHKSHAYTHSLEAGHHVYINLRTEKVYCLPDGYEVIDPSLDDIRNVLNPRFTREQVLQLDK 181          
BLAST of mRNA_H-elongata_contig186580.5082.1 vs. uniprot
Match: A0A1S3H9G7_LINUN (U4/U6.U5 tri-snRNP-associated protein 2-like n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3H9G7_LINUN)

HSP 1 Score: 132 bits (333), Expect = 2.310e-35
Identity = 61/85 (71.76%), Postives = 72/85 (84.71%), Query Frame = 0
Query:    1 QLCSVSLSNNNVYACLVCGKYYQGRGRNTHAYTHSVQHGHHVFINLRTCRVYCLPDSYEVLDSSLEDIKRALDPRFSPDAIVALD 85
            +LCSVSLS+ NVYACLVCGKY+QGRG  +HAYTHSVQ GHHVF+NL T + YCLPD+YE++DSSLEDI   L+P F PD IVA+D
Sbjct:   54 KLCSVSLSHLNVYACLVCGKYFQGRGMKSHAYTHSVQDGHHVFLNLETHKFYCLPDNYEIIDSSLEDIIYVLNPTFKPDQIVAMD 138          
BLAST of mRNA_H-elongata_contig186580.5082.1 vs. uniprot
Match: D5ACN8_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=D5ACN8_PICSI)

HSP 1 Score: 131 bits (330), Expect = 2.410e-35
Identity = 60/87 (68.97%), Postives = 72/87 (82.76%), Query Frame = 0
Query:    1 QLCSVSLSNNNVYACLVCGKYYQGRGRNTHAYTHSVQHGHHVFINLRTCRVYCLPDSYEVLDSSLEDIKRALDPRFSPDAIVALDKV 87
            + CSVSLSN NVYACLVCGKYYQGRGRN+HAYTHS++ GHHV+INLRT + YCLPD YEV D SL+DI+  L+PRFS + +  LD +
Sbjct:  106 KFCSVSLSNLNVYACLVCGKYYQGRGRNSHAYTHSLEAGHHVYINLRTEKAYCLPDGYEVNDPSLDDIRHVLNPRFSREQVEQLDTI 192          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig186580.5082.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZ76_9PHAE2.610e-4789.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI00077B08501.860e-3673.26U4/U6.U5 tri-snRNP-associated protein 2-like n=1 T... [more]
A0A6S7FRC5_PARCT5.020e-3667.44U4 tri-snRNP-associated 2 (Fragment) n=2 Tax=Param... [more]
UPI001CF3C8C45.630e-3673.26U4/U6.U5 tri-snRNP-associated protein 2-like n=1 T... [more]
A0A0N0PFT4_PAPMA5.930e-3670.59U4/U6.U5 tri-snRNP-associated protein 2 n=1 Tax=Pa... [more]
A0A7I8JKN2_SPIIN8.180e-3668.60Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]
A0A835Z9Q1_9STRA1.180e-3573.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
S8C2M8_9LAMI1.360e-3568.60Uncharacterized protein (Fragment) n=1 Tax=Genlise... [more]
A0A1S3H9G7_LINUN2.310e-3571.76U4/U6.U5 tri-snRNP-associated protein 2-like n=1 T... [more]
D5ACN8_PICSI2.410e-3568.97Uncharacterized protein n=1 Tax=Picea sitchensis T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001607Zinc finger, UBP-typeSMARTSM00290Zf_UBP_1coord: 2..51
e-value: 5.6E-15
score: 65.7
IPR001607Zinc finger, UBP-typePFAMPF02148zf-UBPcoord: 3..64
e-value: 1.4E-15
score: 57.4
IPR001607Zinc finger, UBP-typePROSITEPS50271ZF_UBPcoord: 1..62
score: 18.35
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..72
e-value: 1.2E-30
score: 107.1
IPR033809USP39PANTHERPTHR21646:SF16U4/U6.U5 TRI-SNRNP-ASSOCIATED PROTEIN 2coord: 2..86
NoneNo IPR availablePANTHERPTHR21646FAMILY NOT NAMEDcoord: 2..86
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 2..75

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig186580contigH-elongata_contig186580:897..1172 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig186580.5082.1mRNA_H-elongata_contig186580.5082.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig186580 897..1172 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig186580.5082.1 ID=prot_H-elongata_contig186580.5082.1|Name=mRNA_H-elongata_contig186580.5082.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
QLCSVSLSNNNVYACLVCGKYYQGRGRNTHAYTHSVQHGHHVFINLRTCR
VYCLPDSYEVLDSSLEDIKRALDPRFSPDAIVALDKVFVVW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001607Znf_UBP
IPR013083Znf_RING/FYVE/PHD
IPR033809USP39