mRNA_H-elongata_contig186418.5073.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig186418.5073.1
Unique NamemRNA_H-elongata_contig186418.5073.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig186418.5073.1 vs. uniprot
Match: D7FQU1_ECTSI (Intraflagellar transport particle protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQU1_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 5.030e-39
Identity = 70/74 (94.59%), Postives = 73/74 (98.65%), Query Frame = 1 
Query:   19 KVPNTGKEVRYKIIRNIGTAFVRMGQFQDAIGQYDTIMQGNPDHQTGFNLVLCYYALEDVLSMKKAFQRLSAIP 240
            +VPNTGKEVR+KIIRNIGTAFVRMGQFQDAIGQYDTIMQGNPDHQTGFNLVLCYYALED LSMKKAFQRL+AIP
Sbjct:  161 QVPNTGKEVRFKIIRNIGTAFVRMGQFQDAIGQYDTIMQGNPDHQTGFNLVLCYYALEDGLSMKKAFQRLAAIP 234
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BLAST of mRNA_H-elongata_contig186418.5073.1 vs. uniprot
Match: A0A7S2CJ00_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CJ00_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.270e-27
Identity = 50/74 (67.57%), Postives = 59/74 (79.73%), Query Frame = 1 
Query:   19 KVPNTGKEVRYKIIRNIGTAFVRMGQFQDAIGQYDTIMQGNPDHQTGFNLVLCYYALEDVLSMKKAFQRLSAIP 240
            ++P TGKE+R+KI RNIG AFVR+GQFQDAI  Y+TIM GN D QTGFNLVLCYYAL D   MK+ F +L +IP
Sbjct:   90 QIPPTGKEIRFKIFRNIGNAFVRLGQFQDAIQSYETIMAGNADFQTGFNLVLCYYALGDADKMKRGFAKLLSIP 163
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BLAST of mRNA_H-elongata_contig186418.5073.1 vs. uniprot
Match: A0A7S2CJI7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CJI7_9STRA)

HSP 1 Score: 107 bits (267), Expect = 4.160e-27
Identity = 50/74 (67.57%), Postives = 59/74 (79.73%), Query Frame = 1 
Query:   19 KVPNTGKEVRYKIIRNIGTAFVRMGQFQDAIGQYDTIMQGNPDHQTGFNLVLCYYALEDVLSMKKAFQRLSAIP 240
            ++P TGKE+R+KI RNIG AFVR+GQFQDAI  Y+TIM GN D QTGFNLVLCYYAL D   MK+ F +L +IP
Sbjct:   90 QIPPTGKEIRFKIFRNIGNAFVRLGQFQDAIQSYETIMAGNADFQTGFNLVLCYYALGDADKMKRGFAKLLSIP 163
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BLAST of mRNA_H-elongata_contig186418.5073.1 vs. uniprot
Match: A0A7S4HSQ6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HSQ6_9EUKA)

HSP 1 Score: 105 bits (262), Expect = 8.830e-27
Identity = 48/73 (65.75%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:   19 KVPNTGKEVRYKIIRNIGTAFVRMGQFQDAIGQYDTIMQGNPDHQTGFNLVLCYYALEDVLSMKKAFQRLSAI 237
            ++PNTG+EVRYKI+RNIG AFVR+GQFQDAI  ++ IM+G+PD QTGFNLVLCYYA  +   MKK F RL ++
Sbjct:   87 QIPNTGREVRYKIMRNIGNAFVRLGQFQDAIASFEQIMEGSPDLQTGFNLVLCYYAAGEKERMKKGFSRLLSV 159
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BLAST of mRNA_H-elongata_contig186418.5073.1 vs. uniprot
Match: A0A835Z9Y6_9STRA (Intraflagellar transport particle protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Y6_9STRA)

HSP 1 Score: 110 bits (274), Expect = 2.650e-26
Identity = 52/73 (71.23%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:   19 KVPNTGKEVRYKIIRNIGTAFVRMGQFQDAIGQYDTIMQGNPDHQTGFNLVLCYYALEDVLSMKKAFQRLSAI 237
            + PNTG EVR KI RNIGTAFVRMGQ+QDAIG Y+T+M G+PD  TG NL+LC+YALED   MK+AFQRL AI
Sbjct:  170 QTPNTGSEVRSKIFRNIGTAFVRMGQYQDAIGAYETVMSGSPDVLTGLNLLLCHYALEDAAQMKRAFQRLVAI 242
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BLAST of mRNA_H-elongata_contig186418.5073.1 vs. uniprot
Match: A0A7S4B2R6_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B2R6_CHRCT)

HSP 1 Score: 107 bits (266), Expect = 3.230e-25
Identity = 47/73 (64.38%), Postives = 61/73 (83.56%), Query Frame = 1 
Query:   19 KVPNTGKEVRYKIIRNIGTAFVRMGQFQDAIGQYDTIMQGNPDHQTGFNLVLCYYALEDVLSMKKAFQRLSAI 237
            ++PNTGKE+++KI+RNIG AFVR+GQFQDA+  Y+ IM+G+PD QTGFNLVLCYYAL D   M+K F RL ++
Sbjct:  263 QIPNTGKEIKHKIVRNIGNAFVRLGQFQDALASYEQIMEGSPDLQTGFNLVLCYYALGDKERMRKGFSRLLSV 335
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BLAST of mRNA_H-elongata_contig186418.5073.1 vs. uniprot
Match: A0A0G4FEP3_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FEP3_VITBC)

HSP 1 Score: 106 bits (264), Expect = 6.020e-25
Identity = 49/73 (67.12%), Postives = 59/73 (80.82%), Query Frame = 1 
Query:   19 KVPNTGKEVRYKIIRNIGTAFVRMGQFQDAIGQYDTIMQGNPDHQTGFNLVLCYYALEDVLSMKKAFQRLSAI 237
            ++PNTGKE+RYKI+RNIG AF RMGQF DAI  Y+ IMQGNPD QTGFNL+LCY+AL D   +K+ F RL +I
Sbjct:  248 QIPNTGKEIRYKILRNIGHAFFRMGQFSDAIDAYENIMQGNPDFQTGFNLLLCYFALGDKDKLKQGFTRLLSI 320
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BLAST of mRNA_H-elongata_contig186418.5073.1 vs. uniprot
Match: A0A7S2DGD4_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DGD4_9EUKA)

HSP 1 Score: 105 bits (263), Expect = 8.160e-25
Identity = 49/73 (67.12%), Postives = 59/73 (80.82%), Query Frame = 1 
Query:   19 KVPNTGKEVRYKIIRNIGTAFVRMGQFQDAIGQYDTIMQGNPDHQTGFNLVLCYYALEDVLSMKKAFQRLSAI 237
            ++PNTG+E+RYKI+RNIG AFVR+GQFQDAI  YD IM G+ D QTGFNLVLCYYA  +   MKKAF RL ++
Sbjct:  190 QIPNTGREIRYKIMRNIGNAFVRLGQFQDAIASYDQIMDGSADLQTGFNLVLCYYAAGEKERMKKAFSRLLSV 262
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BLAST of mRNA_H-elongata_contig186418.5073.1 vs. uniprot
Match: F0YAE8_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAE8_AURAN)

HSP 1 Score: 105 bits (262), Expect = 1.050e-24
Identity = 46/74 (62.16%), Postives = 59/74 (79.73%), Query Frame = 1 
Query:   19 KVPNTGKEVRYKIIRNIGTAFVRMGQFQDAIGQYDTIMQGNPDHQTGFNLVLCYYALEDVLSMKKAFQRLSAIP 240
            ++PNTGK +R+KI RNIG AFVR+GQF DA+  Y+TIM G+PD  TGFNL+LCYYAL D   M++ FQ+L +IP
Sbjct:  178 QIPNTGKHIRFKIFRNIGNAFVRLGQFGDAVQSYETIMGGDPDFHTGFNLILCYYALGDAEKMRRGFQKLISIP 251
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BLAST of mRNA_H-elongata_contig186418.5073.1 vs. uniprot
Match: A0A7S1C9E8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C9E8_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.120e-24
Identity = 49/74 (66.22%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:   19 KVPNTGKEVRYKIIRNIGTAFVRMGQFQDAIGQYDTIMQGNPDHQTGFNLVLCYYALEDVLSMKKAFQRLSAIP 240
            ++PNT KE R KI+RNIG AFVRMGQFQDAIG ++ IM+GNP  QTGFNLV+CYYA  D   MKK F +L +IP
Sbjct:  240 QIPNTNKETRLKIMRNIGNAFVRMGQFQDAIGSFEAIMEGNPGFQTGFNLVVCYYARGDADKMKKGFTQLLSIP 313
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig186418.5073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQU1_ECTSI5.030e-3994.59Intraflagellar transport particle protein n=2 Tax=... [more]
A0A7S2CJ00_9STRA1.270e-2767.57Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2CJI7_9STRA4.160e-2767.57Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S4HSQ6_9EUKA8.830e-2765.75Hypothetical protein (Fragment) n=1 Tax=Prymnesium... [more]
A0A835Z9Y6_9STRA2.650e-2671.23Intraflagellar transport particle protein n=1 Tax=... [more]
A0A7S4B2R6_CHRCT3.230e-2564.38Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A0G4FEP3_VITBC6.020e-2567.12Uncharacterized protein n=3 Tax=Vitrella brassicaf... [more]
A0A7S2DGD4_9EUKA8.160e-2567.12Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
F0YAE8_AURAN1.050e-2462.16Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S1C9E8_9STRA1.120e-2466.22Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig186418contigH-elongata_contig186418:214..638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.5
Seed ortholog evalue2.6e-33
Seed eggNOG ortholog2880.D7FQU1
Preferred nameIFT88
KEGG koko:K16474
GOsGO:0000003,GO:0000226,GO:0000902,GO:0000904,GO:0001578,GO:0001654,GO:0001655,GO:0001669,GO:0001822,GO:0001885,GO:0001886,GO:0001889,GO:0001944,GO:0002064,GO:0002080,GO:0002081,GO:0002119,GO:0002164,GO:0003002,GO:0003006,GO:0003007,GO:0003008,GO:0003158,GO:0003205,GO:0003206,GO:0003279,GO:0003382,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005813,GO:0005814,GO:0005815,GO:0005856,GO:0005929,GO:0005930,GO:0006810,GO:0006928,GO:0006950,GO:0006970,GO:0006996,GO:0006997,GO:0007010,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007224,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007288,GO:0007289,GO:0007290,GO:0007368,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007507,GO:0007600,GO:0007605,GO:0007610,GO:0007626,GO:0008092,GO:0008104,GO:0008150,GO:0008283,GO:0008285,GO:0008544,GO:0008589,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009894,GO:0009952,GO:0009953,GO:0009966,GO:0009967,GO:0009987,GO:0010468,GO:0010506,GO:0010646,GO:0010647,GO:0010970,GO:0012505,GO:0012506,GO:0014706,GO:0015630,GO:0016020,GO:0016043,GO:0016241,GO:0019222,GO:0019894,GO:0019953,GO:0021510,GO:0021511,GO:0021513,GO:0021537,GO:0022008,GO:0022412,GO:0022414,GO:0022603,GO:0022607,GO:0022611,GO:0023051,GO:0023052,GO:0023056,GO:0030030,GO:0030031,GO:0030141,GO:0030154,GO:0030162,GO:0030182,GO:0030317,GO:0030323,GO:0030324,GO:0030326,GO:0030659,GO:0030667,GO:0030705,GO:0030855,GO:0030900,GO:0030990,GO:0030992,GO:0031016,GO:0031090,GO:0031122,GO:0031175,GO:0031323,GO:0031329,GO:0031344,GO:0031410,GO:0031503,GO:0031514,GO:0031982,GO:0031984,GO:0032101,GO:0032103,GO:0032391,GO:0032421,GO:0032501,GO:0032502,GO:0032504,GO:0032838,GO:0032989,GO:0032991,GO:0033036,GO:0033043,GO:0034405,GO:0035051,GO:0035082,GO:0035107,GO:0035108,GO:0035113,GO:0035295,GO:0035640,GO:0035641,GO:0035735,GO:0035869,GO:0036064,GO:0036334,GO:0040011,GO:0040012,GO:0040017,GO:0040024,GO:0042073,GO:0042127,GO:0042481,GO:0042487,GO:0042490,GO:0042592,GO:0042692,GO:0042733,GO:0042995,GO:0043005,GO:0043053,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043567,GO:0043568,GO:0043583,GO:0044085,GO:0044087,GO:0044088,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044431,GO:0044433,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044450,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045446,GO:0045595,GO:0045598,GO:0046907,GO:0048232,GO:0048468,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048598,GO:0048609,GO:0048645,GO:0048646,GO:0048666,GO:0048699,GO:0048731,GO:0048732,GO:0048736,GO:0048738,GO:0048839,GO:0048853,GO:0048854,GO:0048856,GO:0048869,GO:0048870,GO:0048872,GO:0050678,GO:0050680,GO:0050789,GO:0050793,GO:0050794,GO:0050795,GO:0050877,GO:0050896,GO:0050920,GO:0050921,GO:0050954,GO:0051128,GO:0051146,GO:0051171,GO:0051179,GO:0051234,GO:0051239,GO:0051246,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0051716,GO:0055007,GO:0055115,GO:0060021,GO:0060091,GO:0060113,GO:0060119,GO:0060122,GO:0060173,GO:0060255,GO:0060259,GO:0060271,GO:0060322,GO:0060411,GO:0060426,GO:0060429,GO:0060491,GO:0060537,GO:0060541,GO:0060914,GO:0061008,GO:0061061,GO:0061351,GO:0065007,GO:0065008,GO:0070613,GO:0070925,GO:0071840,GO:0072001,GO:0072358,GO:0072359,GO:0080090,GO:0090102,GO:0097014,GO:0097223,GO:0097435,GO:0097458,GO:0097541,GO:0097542,GO:0097546,GO:0097708,GO:0097722,GO:0097730,GO:0097731,GO:0097732,GO:0097733,GO:0098588,GO:0098589,GO:0098791,GO:0098805,GO:0098862,GO:0099111,GO:0099503,GO:0099568,GO:0120025,GO:0120031,GO:0120032,GO:0120035,GO:0120036,GO:0120038,GO:1902017,GO:1902115,GO:1903317,GO:1903929,GO:1905515,GO:2000026,GO:2000027,GO:2000785
EggNOG free text desc.non-motile cilium assembly
EggNOG OGsCOG0457@1,KOG2003@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size240
Cds size240
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930066.8815346-CDS-H-elongata_contig186418:213..3151622930066.8815346-CDS-H-elongata_contig186418:213..315Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186418 214..315 +
1691679268.1329076-CDS-H-elongata_contig186418:213..3151691679268.1329076-CDS-H-elongata_contig186418:213..315Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186418 214..315 +
1622930066.8978496-CDS-H-elongata_contig186418:500..6381622930066.8978496-CDS-H-elongata_contig186418:500..638Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186418 501..638 +
1691679268.1432219-CDS-H-elongata_contig186418:500..6381691679268.1432219-CDS-H-elongata_contig186418:500..638Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186418 501..638 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig186418.5073.1prot_H-elongata_contig186418.5073.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig186418 214..638 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig186418.5073.1

>prot_H-elongata_contig186418.5073.1 ID=prot_H-elongata_contig186418.5073.1|Name=mRNA_H-elongata_contig186418.5073.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
MIHFTFKVPNTGKEVRYKIIRNIGTAFVRMGQFQDAIGQYDTIMQGNPDH
QTGFNLVLCYYALEDVLSMKKAFQRLSAIP
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mRNA from alignment at H-elongata_contig186418:214..638+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig186418.5073.1 ID=mRNA_H-elongata_contig186418.5073.1|Name=mRNA_H-elongata_contig186418.5073.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=425bp|location=Sequence derived from alignment at H-elongata_contig186418:214..638+ (Himanthalia elongata Himel1 dioecious)
ATGATCCACTTTACTTTTAAGGTTCCAAACACTGGGAAAGAGGTGCGGTA
TAAGATCATCCGTAACATCGGGACGGCATTCGTTCGAATGGGACAGTTCC
AGGTGAGAACTTTGGAAACGCCTTGTTGTAATGTTGTTGTTTTTTAACTC
TTAGCAGCACAATGTGCTGAGTACTGGTCTCCGTCAACGCCGGGAGTTCG
CCACATTTGGCAGATTAATAGCTAGATAAGATGATCGCCAACCTAACTCT
ATCTGAATATGCCCACGGCACGATTTAATGCTGGCAGGATGCGATAGGCC
AGTATGATACGATAATGCAAGGCAACCCCGACCACCAGACTGGCTTTAAT
CTGGTTCTGTGCTACTACGCACTTGAAGATGTACTATCTATGAAAAAAGC
TTTTCAACGGCTGTCAGCAATACCT
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Coding sequence (CDS) from alignment at H-elongata_contig186418:214..638+

>mRNA_H-elongata_contig186418.5073.1 ID=mRNA_H-elongata_contig186418.5073.1|Name=mRNA_H-elongata_contig186418.5073.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig186418:214..638+ (Himanthalia elongata Himel1 dioecious)
ATGATCCACTTTACTTTTAAGGTTCCAAACACTGGGAAAGAGGTGCGGTA
TAAGATCATCCGTAACATCGGGACGGCATTCGTTCGAATGGGACAGTTCC
AGATGATCCACTTTACTTTTAAGGTTCCAAACACTGGGAAAGAGGTGCGG
TATAAGATCATCCGTAACATCGGGACGGCATTCGTTCGAATGGGACAGTT
CCAGGATGCGATAGGCCAGTATGATACGATAATGCAAGGCAACCCCGACC
ACCAGACTGGCTTTAATCTGGTTCTGTGCTACTACGCACTTGAAGATGTA
CTATCTATGAAAAAAGCTTTTCAACGGCTGTCAGCAATACCTGATGCGAT
AGGCCAGTATGATACGATAATGCAAGGCAACCCCGACCACCAGACTGGCT
TTAATCTGGTTCTGTGCTACTACGCACTTGAAGATGTACTATCTATGAAA
AAAGCTTTTCAACGGCTGTCAGCAATACCT
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