mRNA_H-elongata_contig186352.5069.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig186352.5069.1
Unique NamemRNA_H-elongata_contig186352.5069.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig186352.5069.1 vs. uniprot
Match: R4XGN1_TAPDE (Uncharacterized protein n=1 Tax=Taphrina deformans (strain PYCC 5710 / ATCC 11124 / CBS 356.35 / IMI 108563 / JCM 9778 / NBRC 8474) TaxID=1097556 RepID=R4XGN1_TAPDE)

HSP 1 Score: 63.2 bits (152), Expect = 7.560e-8
Identity = 52/178 (29.21%), Postives = 78/178 (43.82%), Query Frame = 1 
Query:  127 RACWVCKSTEHISLACPAQFCQGCGKKGHHVRQCKKKEHNTVMAVGQVEELAPGDESPVSSDVELEAYTAHIEGKCMVSVGMDGEHSRVGEEP--WILDSGATGHFTHDGSILAGYAECSRV-LHGAGGEAFPIVGTGSLTLCVQSGGGVVRVKLNDVAHAPGLSHHLLSLRRIDDAG 651
            R+C+ CKSTEH    C A    G   K   V+  +++    +    Q + + P   +P        A+T    G  ++S            EP  WILDSGAT HFTH    LA + +     +  AGG    +VG G +T+   +      + L+DV + P +  +LLS + I   G
Sbjct:  380 RSCYTCKSTEHTVWNCTAP---GADAKRAEVKAARERAR--LRDNPQAKSIKPASATPSEDPKAHGAFTVQYAG--LIS------------EPNVWILDSGATSHFTHQKDWLADFEDVPHYNVSAAGGHKLTVVGKGKVTIKSDT----FSMTLSDVMYCPQIQENLLSTKGIVSKG 534
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BLAST of mRNA_H-elongata_contig186352.5069.1 vs. uniprot
Match: UPI001AD8DC38 (uncharacterized protein LOC121052952 isoform X1 n=1 Tax=Rosa chinensis TaxID=74649 RepID=UPI001AD8DC38)

HSP 1 Score: 62.8 bits (151), Expect = 8.300e-8
Identity = 35/86 (40.70%), Postives = 55/86 (63.95%), Query Frame = 1 
Query:  391 VGEEPWILDSGATGHFTHDGSILAGYAE--CSRVLHGAGGEAFPIVGTGSLTLCVQSGGGVVRVKLNDVAHAPGLSHHLLSLRRID 642
            VGE+ WI+DSGA+ H T+D S     +    S+V + A GEAFP++GTGS+ L          ++L++V + P LSHHL+S+ +++
Sbjct:  348 VGEDTWIIDSGASDHMTYDKSYFTHLSPPPVSKVTN-ANGEAFPVLGTGSVRLTPT-------LELHNVLYVPALSHHLISVPQLN 425
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BLAST of mRNA_H-elongata_contig186352.5069.1 vs. uniprot
Match: A0A2P6R6I2_ROSCH (Putative RNA-directed DNA polymerase n=3 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6R6I2_ROSCH)

HSP 1 Score: 59.3 bits (142), Expect = 1.650e-6
Identity = 34/93 (36.56%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:  391 VGEEPWILDSGATGHFTHDGSILAGYAE--CSRVLHGAGGEAFPIVGTGSLTLCVQSGGGVVRVKLNDVAHAPGLSHHLLSLRRIDDAGQTYI 663
            VG + WI+DSGA+ H T+D +     +    S V + A GEAFP++GTGS+ +          ++L++V + P LSHHL+S+ +++   Q  I
Sbjct:  115 VGSDTWIIDSGASDHMTYDKTYFTELSSPPVSYVTN-ANGEAFPVLGTGSIRITPT-------LQLHNVLYVPDLSHHLISVPQLNTESQCSI 199
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BLAST of mRNA_H-elongata_contig186352.5069.1 vs. uniprot
Match: A0A2P6RT72_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6RT72_ROSCH)

HSP 1 Score: 58.2 bits (139), Expect = 3.860e-6
Identity = 40/128 (31.25%), Postives = 66/128 (51.56%), Query Frame = 1 
Query:  277 LAPGDESPVSSDVELEAYTAHIEGKCMVSVGMDGE----HSRVGEEPWILDSGATGHFTHDGSILAGYAE--CSRVLHGAGGEAFPIVGTGSLTLCVQSGGGVVRVKLNDVAHAPGLSHHLLSLRRID 642
            L  G  S V+   ++E      +G      G  G      + VG + WI+DSGA+ H T+D S     +    S V + A GEAFP++G+GS+ +          ++L++V + P LSHHL+S+ +++
Sbjct:    2 LVKGQSSKVNDVQKVEVSVRSSDGGSFGDCGKIGMALNVSNFVGSDTWIIDSGASDHMTYDKSYFTDLSSPPVSYVTN-ANGEAFPVLGSGSVRVTPT-------LELHNVLYVPDLSHHLISVPQLN 121
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BLAST of mRNA_H-elongata_contig186352.5069.1 vs. uniprot
Match: A0A2P6Q6A6_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6Q6A6_ROSCH)

HSP 1 Score: 58.2 bits (139), Expect = 3.890e-6
Identity = 31/85 (36.47%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:  391 VGEEPWILDSGATGHFTHDGSILAGYAE-CSRVLHGAGGEAFPIVGTGSLTLCVQSGGGVVRVKLNDVAHAPGLSHHLLSLRRID 642
            VG + WI+DSGA+ H T+D S     +      +  A GEAFP++G+GS+  C+        ++L++V + P LSHHL+S+ +++
Sbjct:    9 VGSDTWIIDSGASDHMTYDKSYFTDLSSPLVSYVTNANGEAFPVLGSGSV--CITP-----TLELHNVLYVPDLSHHLISVPQLN 86
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BLAST of mRNA_H-elongata_contig186352.5069.1 vs. uniprot
Match: A0A2P6PGT1_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6PGT1_ROSCH)

HSP 1 Score: 57.4 bits (137), Expect = 5.730e-6
Identity = 32/86 (37.21%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:  391 VGEEPWILDSGATGHFTHDGSILAGYAE--CSRVLHGAGGEAFPIVGTGSLTLCVQSGGGVVRVKLNDVAHAPGLSHHLLSLRRID 642
            VG + WI+DSGA+ H T+D S     +    S V + A GEAFP++G+GS+ +          ++L++V + P LSHHL+S+ +++
Sbjct:   47 VGSDTWIIDSGASDHMTYDKSYFTDLSSPPVSYVTN-ANGEAFPVLGSGSVRITPT-------LELHNVLYVPDLSHHLISVPQLN 124
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BLAST of mRNA_H-elongata_contig186352.5069.1 vs. uniprot
Match: A0A2P6SHX0_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6SHX0_ROSCH)

HSP 1 Score: 57.4 bits (137), Expect = 5.750e-6
Identity = 32/88 (36.36%), Postives = 53/88 (60.23%), Query Frame = 1 
Query:  391 VGEEPWILDSGATGHFTHDGSILAGYAECS----RVLHGAGGEAFPIVGTGSLTLCVQSGGGVVRVKLNDVAHAPGLSHHLLSLRRID 642
            VG + WI+DSGA+ H T+D S    + E S      +  A GEAFP++G+GS+ +          ++L++V + P LSHHL+S+ +++
Sbjct:    9 VGSDTWIIDSGASDHMTYDKSF---FTELSPPPVSYVTNANGEAFPVLGSGSVRITPT-------LELHNVLYVPDLSHHLISVPQLN 86
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BLAST of mRNA_H-elongata_contig186352.5069.1 vs. uniprot
Match: A0A177T2I3_9BASI (Uncharacterized protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177T2I3_9BASI)

HSP 1 Score: 55.8 bits (133), Expect = 2.410e-5
Identity = 45/158 (28.48%), Postives = 72/158 (45.57%), Query Frame = 1 
Query:  187 CQGCGKKGHHVRQCKKKEHNTVMAVGQVEELAPGDESPVSSDVELEAYTAHIE-GKCMVSVGMDGEHSRVGEEPWILDSGATGHFTHDGSILAGY--AECSRVLHGAGGEAFPIVGTGSLTLCVQSGGGVVRVKLNDVAHAPGLSHHLLSLRRIDDAG 651
            C  C K GH+   C+K+    +   G+ +E A              A   HI  G+ MV     G  S++    +++DSGAT H   D      Y   E  RV+  A G + PI+G G++T+C+  G    ++ +   A+ P    +LLS+ ++ D G
Sbjct:  229 CHYCKKLGHYKNDCRKR----IADEGKGKERA------------AYANEQHIYMGQAMVCAETQGPRSQL---TFVIDSGATRHIVTDRRWFTRYEPVEAGRVITTANGASMPILGMGTVTICMGDG---KKISIAGTAYVPSAVTNLLSVDKMVDEG 364
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig186352.5069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
R4XGN1_TAPDE7.560e-829.21Uncharacterized protein n=1 Tax=Taphrina deformans... [more]
UPI001AD8DC388.300e-840.70uncharacterized protein LOC121052952 isoform X1 n=... [more]
A0A2P6R6I2_ROSCH1.650e-636.56Putative RNA-directed DNA polymerase n=3 Tax=Rosa ... [more]
A0A2P6RT72_ROSCH3.860e-631.25Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A2P6Q6A6_ROSCH3.890e-636.47Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A2P6PGT1_ROSCH5.730e-637.21Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A2P6SHX0_ROSCH5.750e-636.36Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A177T2I3_9BASI2.410e-528.48Uncharacterized protein n=1 Tax=Tilletia indica Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig186352contigH-elongata_contig186352:262..975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score61.2
Seed ortholog evalue7.4e-07
Seed eggNOG ortholog3659.XP_004145411.1
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs37SCF@33090,3GAWJ@35493,4JPX1@91835,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size714
Cds size714
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930066.4670343-CDS-H-elongata_contig186352:261..9751622930066.4670343-CDS-H-elongata_contig186352:261..975Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186352 262..975 +
1691679267.9650793-CDS-H-elongata_contig186352:261..9751691679267.9650793-CDS-H-elongata_contig186352:261..975Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig186352 262..975 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig186352.5069.1prot_H-elongata_contig186352.5069.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig186352 262..975 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig186352.5069.1

>prot_H-elongata_contig186352.5069.1 ID=prot_H-elongata_contig186352.5069.1|Name=mRNA_H-elongata_contig186352.5069.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=238bp
AGGADAQRRGKLGGKPRGGGGGGHSSGSSDGASDGAAAGGAGRACWVCKS
TEHISLACPAQFCQGCGKKGHHVRQCKKKEHNTVMAVGQVEELAPGDESP
VSSDVELEAYTAHIEGKCMVSVGMDGEHSRVGEEPWILDSGATGHFTHDG
SILAGYAECSRVLHGAGGEAFPIVGTGSLTLCVQSGGGVVRVKLNDVAHA
PGLSHHLLSLRRIDDAGQTYIGRLEGILVKFKSGDEMF
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mRNA from alignment at H-elongata_contig186352:262..975+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig186352.5069.1 ID=mRNA_H-elongata_contig186352.5069.1|Name=mRNA_H-elongata_contig186352.5069.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=714bp|location=Sequence derived from alignment at H-elongata_contig186352:262..975+ (Himanthalia elongata Himel1 dioecious)
GCCGGTGGGGCCGACGCACAACGCCGCGGCAAATTAGGAGGAAAACCACG
CGGCGGTGGAGGTGGTGGACACAGCAGCGGCAGCAGCGACGGTGCCAGCG
ATGGCGCCGCCGCCGGGGGGGCGGGGCGAGCCTGCTGGGTGTGCAAGAGC
ACTGAGCATATTAGTCTCGCCTGCCCTGCTCAGTTCTGTCAAGGGTGCGG
CAAGAAGGGGCACCACGTCCGCCAGTGCAAGAAAAAGGAGCACAACACGG
TGATGGCGGTGGGCCAAGTCGAGGAGCTTGCACCAGGAGACGAGTCACCG
GTCAGCTCAGACGTCGAGCTGGAGGCGTACACTGCCCACATCGAAGGCAA
GTGTATGGTTTCTGTTGGGATGGATGGTGAACATTCGCGCGTAGGGGAAG
AACCCTGGATACTGGATTCGGGGGCTACAGGTCATTTTACGCATGACGGC
AGCATACTTGCCGGCTACGCGGAGTGCAGCAGAGTGTTGCATGGCGCGGG
AGGCGAAGCTTTCCCAATCGTAGGCACTGGATCTTTGACTTTGTGTGTTC
AATCTGGGGGTGGGGTTGTCCGCGTCAAGCTAAACGACGTTGCACACGCG
CCAGGCCTCTCCCACCACCTGTTGTCCTTGCGGCGGATTGACGATGCTGG
CCAGACGTACATCGGCCGACTAGAGGGGATCTTGGTCAAATTCAAGTCAG
GGGACGAGATGTTC
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Coding sequence (CDS) from alignment at H-elongata_contig186352:262..975+

>mRNA_H-elongata_contig186352.5069.1 ID=mRNA_H-elongata_contig186352.5069.1|Name=mRNA_H-elongata_contig186352.5069.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1428bp|location=Sequence derived from alignment at H-elongata_contig186352:262..975+ (Himanthalia elongata Himel1 dioecious)
GCCGGTGGGGCCGACGCACAACGCCGCGGCAAATTAGGAGGAAAACCACG
CGGCGGTGGAGGTGGTGGACACAGCAGCGGCAGCAGCGACGGTGCCAGCG
ATGGCGCCGCCGCCGGGGGGGCGGGGCGAGCCTGCTGGGTGTGCAAGAGC
ACTGAGCATATTAGTCTCGCCTGCCCTGCTCAGTTCTGTCAAGGGTGCGG
CAAGAAGGGGCACCACGTCCGCCAGTGCAAGAAAAAGGAGCACAACACGG
TGATGGCGGTGGGCCAAGTCGAGGAGCTTGCACCAGGAGACGAGTCACCG
GTCAGCTCAGACGTCGAGCTGGAGGCGTACACTGCCCACATCGAAGGCAA
GTGTATGGTTTCTGTTGGGATGGATGGTGAACATTCGCGCGTAGGGGAAG
AACCCTGGATACTGGATTCGGGGGCTACAGGTCATTTTACGCATGACGGC
AGCATACTTGCCGGCTACGCGGAGTGCAGCAGAGTGTTGCATGGCGCGGG
AGGCGAAGCTTTCCCAATCGTAGGCACTGGATCTTTGACTTTGTGTGTTC
AATCTGGGGGTGGGGTTGTCCGCGTCAAGCTAAACGACGTTGCACACGCG
CCAGGCCTCTCCCACCACCTGTTGTCCTTGCGGCGGATTGACGATGCTGG
CCAGACGTACATCGGCCGACTAGAGGGGATCTTGGTCAAATTCAAGTCAG
GGGACGAGATGTTCGCCGGTGGGGCCGACGCACAACGCCGCGGCAAATTA
GGAGGAAAACCACGCGGCGGTGGAGGTGGTGGACACAGCAGCGGCAGCAG
CGACGGTGCCAGCGATGGCGCCGCCGCCGGGGGGGCGGGGCGAGCCTGCT
GGGTGTGCAAGAGCACTGAGCATATTAGTCTCGCCTGCCCTGCTCAGTTC
TGTCAAGGGTGCGGCAAGAAGGGGCACCACGTCCGCCAGTGCAAGAAAAA
GGAGCACAACACGGTGATGGCGGTGGGCCAAGTCGAGGAGCTTGCACCAG
GAGACGAGTCACCGGTCAGCTCAGACGTCGAGCTGGAGGCGTACACTGCC
CACATCGAAGGCAAGTGTATGGTTTCTGTTGGGATGGATGGTGAACATTC
GCGCGTAGGGGAAGAACCCTGGATACTGGATTCGGGGGCTACAGGTCATT
TTACGCATGACGGCAGCATACTTGCCGGCTACGCGGAGTGCAGCAGAGTG
TTGCATGGCGCGGGAGGCGAAGCTTTCCCAATCGTAGGCACTGGATCTTT
GACTTTGTGTGTTCAATCTGGGGGTGGGGTTGTCCGCGTCAAGCTAAACG
ACGTTGCACACGCGCCAGGCCTCTCCCACCACCTGTTGTCCTTGCGGCGG
ATTGACGATGCTGGCCAGACGTACATCGGCCGACTAGAGGGGATCTTGGT
CAAATTCAAGTCAGGGGACGAGATGTTC
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