prot_H-elongata_contig186352.5069.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig186352.5069.1
Unique Nameprot_H-elongata_contig186352.5069.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length238
Homology
BLAST of mRNA_H-elongata_contig186352.5069.1 vs. uniprot
Match: R4XGN1_TAPDE (Uncharacterized protein n=1 Tax=Taphrina deformans (strain PYCC 5710 / ATCC 11124 / CBS 356.35 / IMI 108563 / JCM 9778 / NBRC 8474) TaxID=1097556 RepID=R4XGN1_TAPDE)

HSP 1 Score: 63.2 bits (152), Expect = 7.560e-8
Identity = 52/178 (29.21%), Postives = 78/178 (43.82%), Query Frame = 0
Query:   43 RACWVCKSTEHISLACPAQFCQGCGKKGHHVRQCKKKEHNTVMAVGQVEELAPGDESPVSSDVELEAYTAHIEGKCMVSVGMDGEHSRVGEEP--WILDSGATGHFTHDGSILAGYAECSRV-LHGAGGEAFPIVGTGSLTLCVQSGGGVVRVKLNDVAHAPGLSHHLLSLRRIDDAG 217
            R+C+ CKSTEH    C A    G   K   V+  +++    +    Q + + P   +P        A+T    G  ++S            EP  WILDSGAT HFTH    LA + +     +  AGG    +VG G +T+   +      + L+DV + P +  +LLS + I   G
Sbjct:  380 RSCYTCKSTEHTVWNCTAP---GADAKRAEVKAARERAR--LRDNPQAKSIKPASATPSEDPKAHGAFTVQYAG--LIS------------EPNVWILDSGATSHFTHQKDWLADFEDVPHYNVSAAGGHKLTVVGKGKVTIKSDT----FSMTLSDVMYCPQIQENLLSTKGIVSKG 534          
BLAST of mRNA_H-elongata_contig186352.5069.1 vs. uniprot
Match: UPI001AD8DC38 (uncharacterized protein LOC121052952 isoform X1 n=1 Tax=Rosa chinensis TaxID=74649 RepID=UPI001AD8DC38)

HSP 1 Score: 62.8 bits (151), Expect = 8.300e-8
Identity = 35/86 (40.70%), Postives = 55/86 (63.95%), Query Frame = 0
Query:  131 VGEEPWILDSGATGHFTHDGSILAGYAE--CSRVLHGAGGEAFPIVGTGSLTLCVQSGGGVVRVKLNDVAHAPGLSHHLLSLRRID 214
            VGE+ WI+DSGA+ H T+D S     +    S+V + A GEAFP++GTGS+ L          ++L++V + P LSHHL+S+ +++
Sbjct:  348 VGEDTWIIDSGASDHMTYDKSYFTHLSPPPVSKVTN-ANGEAFPVLGTGSVRLTPT-------LELHNVLYVPALSHHLISVPQLN 425          
BLAST of mRNA_H-elongata_contig186352.5069.1 vs. uniprot
Match: A0A2P6R6I2_ROSCH (Putative RNA-directed DNA polymerase n=3 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6R6I2_ROSCH)

HSP 1 Score: 59.3 bits (142), Expect = 1.650e-6
Identity = 34/93 (36.56%), Postives = 55/93 (59.14%), Query Frame = 0
Query:  131 VGEEPWILDSGATGHFTHDGSILAGYAE--CSRVLHGAGGEAFPIVGTGSLTLCVQSGGGVVRVKLNDVAHAPGLSHHLLSLRRIDDAGQTYI 221
            VG + WI+DSGA+ H T+D +     +    S V + A GEAFP++GTGS+ +          ++L++V + P LSHHL+S+ +++   Q  I
Sbjct:  115 VGSDTWIIDSGASDHMTYDKTYFTELSSPPVSYVTN-ANGEAFPVLGTGSIRITPT-------LQLHNVLYVPDLSHHLISVPQLNTESQCSI 199          
BLAST of mRNA_H-elongata_contig186352.5069.1 vs. uniprot
Match: A0A2P6RT72_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6RT72_ROSCH)

HSP 1 Score: 58.2 bits (139), Expect = 3.860e-6
Identity = 40/128 (31.25%), Postives = 66/128 (51.56%), Query Frame = 0
Query:   93 LAPGDESPVSSDVELEAYTAHIEGKCMVSVGMDGE----HSRVGEEPWILDSGATGHFTHDGSILAGYAE--CSRVLHGAGGEAFPIVGTGSLTLCVQSGGGVVRVKLNDVAHAPGLSHHLLSLRRID 214
            L  G  S V+   ++E      +G      G  G      + VG + WI+DSGA+ H T+D S     +    S V + A GEAFP++G+GS+ +          ++L++V + P LSHHL+S+ +++
Sbjct:    2 LVKGQSSKVNDVQKVEVSVRSSDGGSFGDCGKIGMALNVSNFVGSDTWIIDSGASDHMTYDKSYFTDLSSPPVSYVTN-ANGEAFPVLGSGSVRVTPT-------LELHNVLYVPDLSHHLISVPQLN 121          
BLAST of mRNA_H-elongata_contig186352.5069.1 vs. uniprot
Match: A0A2P6Q6A6_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6Q6A6_ROSCH)

HSP 1 Score: 58.2 bits (139), Expect = 3.890e-6
Identity = 31/85 (36.47%), Postives = 52/85 (61.18%), Query Frame = 0
Query:  131 VGEEPWILDSGATGHFTHDGSILAGYAE-CSRVLHGAGGEAFPIVGTGSLTLCVQSGGGVVRVKLNDVAHAPGLSHHLLSLRRID 214
            VG + WI+DSGA+ H T+D S     +      +  A GEAFP++G+GS+  C+        ++L++V + P LSHHL+S+ +++
Sbjct:    9 VGSDTWIIDSGASDHMTYDKSYFTDLSSPLVSYVTNANGEAFPVLGSGSV--CITP-----TLELHNVLYVPDLSHHLISVPQLN 86          
BLAST of mRNA_H-elongata_contig186352.5069.1 vs. uniprot
Match: A0A2P6PGT1_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6PGT1_ROSCH)

HSP 1 Score: 57.4 bits (137), Expect = 5.730e-6
Identity = 32/86 (37.21%), Postives = 53/86 (61.63%), Query Frame = 0
Query:  131 VGEEPWILDSGATGHFTHDGSILAGYAE--CSRVLHGAGGEAFPIVGTGSLTLCVQSGGGVVRVKLNDVAHAPGLSHHLLSLRRID 214
            VG + WI+DSGA+ H T+D S     +    S V + A GEAFP++G+GS+ +          ++L++V + P LSHHL+S+ +++
Sbjct:   47 VGSDTWIIDSGASDHMTYDKSYFTDLSSPPVSYVTN-ANGEAFPVLGSGSVRITPT-------LELHNVLYVPDLSHHLISVPQLN 124          
BLAST of mRNA_H-elongata_contig186352.5069.1 vs. uniprot
Match: A0A2P6SHX0_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6SHX0_ROSCH)

HSP 1 Score: 57.4 bits (137), Expect = 5.750e-6
Identity = 32/88 (36.36%), Postives = 53/88 (60.23%), Query Frame = 0
Query:  131 VGEEPWILDSGATGHFTHDGSILAGYAECS----RVLHGAGGEAFPIVGTGSLTLCVQSGGGVVRVKLNDVAHAPGLSHHLLSLRRID 214
            VG + WI+DSGA+ H T+D S    + E S      +  A GEAFP++G+GS+ +          ++L++V + P LSHHL+S+ +++
Sbjct:    9 VGSDTWIIDSGASDHMTYDKSF---FTELSPPPVSYVTNANGEAFPVLGSGSVRITPT-------LELHNVLYVPDLSHHLISVPQLN 86          
BLAST of mRNA_H-elongata_contig186352.5069.1 vs. uniprot
Match: A0A177T2I3_9BASI (Uncharacterized protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177T2I3_9BASI)

HSP 1 Score: 55.8 bits (133), Expect = 2.410e-5
Identity = 45/158 (28.48%), Postives = 72/158 (45.57%), Query Frame = 0
Query:   63 CQGCGKKGHHVRQCKKKEHNTVMAVGQVEELAPGDESPVSSDVELEAYTAHIE-GKCMVSVGMDGEHSRVGEEPWILDSGATGHFTHDGSILAGY--AECSRVLHGAGGEAFPIVGTGSLTLCVQSGGGVVRVKLNDVAHAPGLSHHLLSLRRIDDAG 217
            C  C K GH+   C+K+    +   G+ +E A              A   HI  G+ MV     G  S++    +++DSGAT H   D      Y   E  RV+  A G + PI+G G++T+C+  G    ++ +   A+ P    +LLS+ ++ D G
Sbjct:  229 CHYCKKLGHYKNDCRKR----IADEGKGKERA------------AYANEQHIYMGQAMVCAETQGPRSQL---TFVIDSGATRHIVTDRRWFTRYEPVEAGRVITTANGASMPILGMGTVTICMGDG---KKISIAGTAYVPSAVTNLLSVDKMVDEG 364          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig186352.5069.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
R4XGN1_TAPDE7.560e-829.21Uncharacterized protein n=1 Tax=Taphrina deformans... [more]
UPI001AD8DC388.300e-840.70uncharacterized protein LOC121052952 isoform X1 n=... [more]
A0A2P6R6I2_ROSCH1.650e-636.56Putative RNA-directed DNA polymerase n=3 Tax=Rosa ... [more]
A0A2P6RT72_ROSCH3.860e-631.25Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A2P6Q6A6_ROSCH3.890e-636.47Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A2P6PGT1_ROSCH5.730e-637.21Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A2P6SHX0_ROSCH5.750e-636.36Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A177T2I3_9BASI2.410e-528.48Uncharacterized protein n=1 Tax=Tilletia indica Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 62..78
e-value: 0.56
score: 12.8
coord: 44..60
e-value: 0.19
score: 15.6
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 63..78
score: 8.977
NoneNo IPR availableGENE3D4.10.60.10coord: 24..86
e-value: 2.5E-6
score: 29.1
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 40..79

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig186352contigH-elongata_contig186352:262..975 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig186352.5069.1mRNA_H-elongata_contig186352.5069.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig186352 262..975 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig186352.5069.1 ID=prot_H-elongata_contig186352.5069.1|Name=mRNA_H-elongata_contig186352.5069.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=238bp
AGGADAQRRGKLGGKPRGGGGGGHSSGSSDGASDGAAAGGAGRACWVCKS
TEHISLACPAQFCQGCGKKGHHVRQCKKKEHNTVMAVGQVEELAPGDESP
VSSDVELEAYTAHIEGKCMVSVGMDGEHSRVGEEPWILDSGATGHFTHDG
SILAGYAECSRVLHGAGGEAFPIVGTGSLTLCVQSGGGVVRVKLNDVAHA
PGLSHHLLSLRRIDDAGQTYIGRLEGILVKFKSGDEMF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf