mRNA_H-elongata_contig18632.5068.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig18632.5068.1 vs. uniprot
Match: A0A6H5K102_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K102_9PHAE) HSP 1 Score: 507 bits (1305), Expect = 8.560e-158 Identity = 486/1016 (47.83%), Postives = 564/1016 (55.51%), Query Frame = 1
Query: 1 EFQQVVTDFQWCEEQLVSEAQDAMRKHVVFESSTLANQQYDLQMLFK----------------------------VMESVNVEVDLRRFIRSARREVASDAAVAAQAALAAENEAPEA----TVTASPTGATVVETEAGEERRASMGTFAGTGVLSRRMDSRAAALTFQRLFGVGPDLPPPPTEEAWAPPEVEGENPSASTQNLLELFLVPLMTKEDISKYLDATDPVAGAAASESAAEAIKASFRSTGLGGVRGLGQASAVANDAKIDAALAKLPSPYPMVTPASSVVEVLGFAAQARHAENYATIVASAAAHG--GLGEAGEVSGGSNRDGLERSG------LSGFGSGTPAKDLEGLGYPRPAAETPSGE-GSKTAAXXXXXXXXXXXXXXXXXXXXXXXXXXVGAAALALVDGDVGADSKNG--DAEPLSAGSQPHQPAATTPSPAAGNDGMSAFFAAAA----------------------------------------------AVFGAADHPKPSPDISPPRSPVTRTPTPAEVGIAPH-----------KPPPAVCVSAADGNSNTSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK--------SESPCLMLVTERPSVFAATLADDVLESLYADGAGATEKTTEEE----------------EVPGDCGGDSGSGSEDNSDLSAAVARVVEALLGSKGVGSAASALPRSGGEACRKSASSSNKLLLALCQRACGDADAPATAAEETSVSASLSGSRRASKDAGKRLDRGEGFTPILLPPESFAGLARLLRASLDLAASGREFLQARNCLVASGLYAVRGTEYVAWLRATEGVGCG-NGLGGQADGDPL-AVMADSELVSAAGALDRLERVDGSSEGGPTA---MATDAASGEVGAASYLLQRELRRHPVWTAIELWEVSMSDSIVMAMDGGGARAERWIPASTLAAMDERFGDDAAGRQLDLKLGQLAFLGQSMLACGLPPTEVKALIR 2661
EFQ+V+TDFQ CEEQL+SEAQD MRKHVVFESS+LANQQYDLQMLFK +ME+VNVE+DLR FIRSARREVASD+ V+AS A+ VE G GVLS R D R AAL QRLFGVG DLPPPPTEEAW PPEVEGE P+A Q L+ELF PL+TKEDIS YLDATDPVAGAAASE+AA AIKA T GG RG + A DAK+DAALAKL S YP+VTPA+SV EVLGFAAQARHA+NY ++A A+ G G G G G N + ++ G L G+ PA + G A P G GS A XXXXXXXXXXXXXXXXX + + + S +G + +P+S+ S+ G DG AAA A AA PT A P +PPPA + + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + SPCL L + RPSVFAATLADDVLESL A+GAGAT++ E PG G D G D + AVAR VEALL + + + EAC +S SSSN+LLLALCQ AC TA+ + ++ +GS +G R GF P+ L P SFA LARLLRASLD AAS REFLQARNCLV +GL+AV G +Y++WLR G G +G + AVMA+SELVSAAG LD + + S+ P A A E AA YLL RELRRHPVW AIELWEVSMSDS+VMAM+GGG RAERW+ TL AM ERFG+DAA RQLD+KLGQLAFLG SML CG+PP+EV++L+R
Sbjct: 255 EFQRVLTDFQGCEEQLMSEAQDGMRKHVVFESSSLANQQYDLQMLFKGCEVNGLTTTACVYISTPRPPPALLHWPLMEAVNVEMDLRNFIRSARREVASDSVAXXXXXXXXXXXXXXXXXXXAVSASGFAASPVEAAHGLXXXXXXXXX-XXGVLSSRADRRGAALAIQRLFGVGQDLPPPPTEEAWVPPEVEGETPAACRQTLVELFHAPLITKEDISMYLDATDPVAGAAASEAAAAAIKALGAPTLAGGARG-----SAAQDAKMDAALAKLSSHYPVVTPAASVYEVLGFAAQARHAKNYKDLLAGASDAGVDGGGVGGVDGGSGNGEIVDAEGRASQRPLPCTGACAPASEQRGGAAD--GANAPEGSSGSNVAGSSSGNGENTXXXXXXXXXXXXXXXXXXXXXXSSGANAEKATPSPDGVVNDKPMSSSSRRE-----------GLDGSVIGGVAAAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAATLAAATPXXXXXXXXXXXXXXXXXPTAATPAPXPXXXXXXXXEEDSQPPPAAVDPQGEDSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEVAVTVSPCLALASRRPSVFAATLADDVLESLRAEGAGATDRRRSXXXXXXXXXXXXXXXXXXEGPG-VGDDRGG------DPATAVARAVEALLTGXXXRTMKAEEVDAAAEACSRSPSSSNRLLLALCQHACPSTTT--TASGDNQGPSATTGSGSTXXGSGPR-----GFAPVRLQPASFAALARLLRASLDQAASDREFLQARNCLVTAGLFAVEGDDYLSWLREQHGSQQGKSGXXXXXXXXXIPAVMANSELVSAAGKLDEVSALSSSAAAAPAADVPSGEGAGEAEEEAAGYLLLRELRRHPVWAAIELWEVSMSDSVVMAMEGGGERAERWLTRDTLDAMGERFGEDAASRQLDVKLGQLAFLGHSMLTCGVPPSEVRSLVR 1237
BLAST of mRNA_H-elongata_contig18632.5068.1 vs. uniprot
Match: D8LEI7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEI7_ECTSI) HSP 1 Score: 368 bits (944), Expect = 2.850e-108 Identity = 359/949 (37.83%), Postives = 404/949 (42.57%), Query Frame = 1
Query: 1 EFQQVVTDFQWCEEQLVSEAQDAMRKHVVFESSTLANQQYDLQMLFKV---------------------------------MESVNVEVDLRRFIRSARREVASDAAVAAQAALAAENEAPEATVT-----ASPTGAT-VVETEAGEERRASMGTFAGTGVLSRRMDSRAAALTFQRLFGVGPDLPPPPTEEAWAPPEVEGENPSASTQNLLELFLVPLMTKEDISKYLDATDPVAGAAASESAAEAIKASFRSTGLGGVRGLGQASAVANDAKIDAALAKLPSPYPMVTPASSVVEVLGFAAQARHAENYATIVASAAAHGGLGEAGEVSGGSNRDGLERSGLSGFGSGTPAKDLEGLGYPRPAAETPSGEGSKTAAXXXXXXXXXXXXXXXXXXXXXXXXXXVGAAALALVDGDVGADSKNGDAEPLSAGSQPHQPAATTPSPAAGNDGMSAFFAAAAAVFGAADHPKPSPDISPPRSPVTRTPTPAEVGIAPHKPPPAVCVSAADGNSNTSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSESPCLMLVTERPSVFAATLADDVLESLYADGAGATEKTTEE-----------------EEVPGDCGGDSGSGSEDNSDLSAAVARVVEALLGSKGVGSAASALPRSGGEACRKSASSSNKLLLALCQRACGDADAPATAAEETSVSASLSGSRRASKDAGKRLDRGEGFTPILLPPESFAGLARLLRASLDLAASGREFLQARNCLVASGLYAVRGTEYVAWLRATEGVGCGNGLGGQADGDPLAVMADSELVSAAGALDRLERVDGSSEGGPTAMATDAASGEVG------AASYLLQRELRRHPVWTAIELWEVSMSDSIVMAMDGGGARAERWIPASTLAAMDERFGDDAAGRQLDLKLGQLAFLGQSMLACGLPPTEVKALIR 2661
EFQ+V+TDFQ CEEQLVSEAQD MRKHVVFESS+LANQQYDLQMLFK+ ME+VNVE+DLR FIRSARREVASD+ ++P AT +VE G GVLS R D R AAL QRLFGVG DLPPPPTEE W PPEVEGE P+A Q L+ELF PL+TKEDIS YLDATDPVAGAAASE+AA AIKA T GG RG A A DAK+DAALAKL S YP+VTPA+SV EVLGFAAQARHA+NY ++A A+ GLG GDAE V PP C A G XXXXXXXXXXXXX SL ADGAGATE+ E + + V +AA EAC Q A+ + + + SGS P+ L P SF LARLLRASLD AAS REFLQARNCLV +GL+AV G YV+WLR +G G VMAD+ELVSAA L A D GE AA YLL RELRRHPVW AIELWEVSMSDS+VMAM+GGGARAERW+ TL AM ERFG+DAA RQLD+KLGQLAFLG SMLACG+PP+E ++L+R
Sbjct: 254 EFQRVLTDFQGCEEQLVSEAQDGMRKHVVFESSSLANQQYDLQMLFKLDELGSKNSEPYRAWHRSKPTSVVWRTLGLAAKLMEAVNVEMDLRNFIRSARREVASDSVAXXXXXXXXXXXXXXXXXXXXXXXSAPGSATSLVEAANGVGXXXXXXXXXXXGVLSSRADRRGAALALQRLFGVGQDLPPPPTEEEWVPPEVEGETPAACRQTLVELFHAPLITKEDISMYLDATDPVAGAAASEAAAAAIKALGAPTLAGGARG-----AAAMDAKMDAALAKLSSHYPVVTPAASVYEVLGFAAQARHAKNYKDLLAGAS-DAGLGXXXXX-----------------------------------------------------------------------------------------XXXXGDAE-------------------------------------------------------------GRVSQ-----PPIPCPDAGAGXXXXXXXXXXXXXXXXXXX-----------------------------------------------------------SLRADGAGATERRGSELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMKADQVDAAA--------EACSXXXXXXXXXXXXXXQHXXXXXXXXASGDNQGPSATTGSGSXX-------XXXXXXXXAPVRLQPASFVALARLLRASLDQAASDREFLQARNCLVTAGLFAVDGGNYVSWLREQDGSQQGKSGXXXXXXXXXXVMADNELVSAARKLXXXXXXXXXXXXXXXP-AADVPGGEGAGDADEEAAGYLLLRELRRHPVWAAIELWEVSMSDSVVMAMEGGGARAERWLTRDTLDAMRERFGEDAASRQLDVKLGQLAFLGHSMLACGVPPSEGRSLVR 966
BLAST of mRNA_H-elongata_contig18632.5068.1 vs. uniprot
Match: A0A835YMJ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMJ7_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 4.430e-8 Identity = 64/199 (32.16%), Postives = 98/199 (49.25%), Query Frame = 1
Query: 1 EFQQVVTDFQWCEEQLVSEAQDAMRKHVVFESSTLANQQYDLQMLFKVMESVNVEVDLRRFIRSARREVASDAAVAAQAALAAENEAPEATVTASPTGATVVETEAGEERRASM-----GTFAGTGVLSRRM---DSRAAALTFQRLFGVGPDLPPPPT-----EEAWAPPEVEGENPSASTQNLLELFLVPLMTKEDI 558
E Q + + Q E SE QD +R++ VFESSTLAN+QYD+QM+FKVME++N D+++F++S R+ V V VT S GA + EA ++ ++ +L+ + DS +A T ++G DLP PP E A +EG + +LL L +PL++K D+
Sbjct: 105 ELQASLNENQAAESTFASELQDGLRRNAVFESSTLANEQYDVQMVFKVMETINGRTDMQKFVQS-RQSVVQQQTV----------------VTGSVPGADIGPEEAMDQTSIAVLQQVFNIVIAPDLLAHPLGDDDSLNSAAT--PMYG---DLPAPPPDAPIKEIPVAGDAMEGSSVPEIPDDLLALLRLPLVSKHDV 281
BLAST of mRNA_H-elongata_contig18632.5068.1 vs. uniprot
Match: A0A7S3YL22_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YL22_HETAK) HSP 1 Score: 61.2 bits (147), Expect = 1.950e-7 Identity = 29/53 (54.72%), Postives = 43/53 (81.13%), Query Frame = 1
Query: 1 EFQQVVTDFQWCEEQLVSEAQDAMRKHVVFESSTLANQQYDLQMLFKVMESVN 159
++Q ++T FQ EE ++EA+D +RK +V E+S LANQQYD+QMLFKVM+++N
Sbjct: 84 DYQCILTSFQKIEELYLAEARDGLRKQLVLEASALANQQYDVQMLFKVMDAIN 136
BLAST of mRNA_H-elongata_contig18632.5068.1 vs. uniprot
Match: A0A7R9YC05_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YC05_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 1.600e-6 Identity = 31/54 (57.41%), Postives = 44/54 (81.48%), Query Frame = 1
Query: 13 VVTDFQWCEEQLVSEAQDAMRKHVVFESSTLANQQYDLQMLFKVMESVNVEVDL 174
+VT+ Q EE+++ QD++R+H VFESS LANQQYD+QMLFK ME+V+ ++DL
Sbjct: 310 LVTEAQSLEEEVLQGLQDSLRQHAVFESSALANQQYDVQMLFKAMEAVDWQLDL 363
BLAST of mRNA_H-elongata_contig18632.5068.1 vs. uniprot
Match: A0A6G0XGP2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XGP2_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 1.710e-6 Identity = 31/65 (47.69%), Postives = 46/65 (70.77%), Query Frame = 1
Query: 7 QQVVTDFQWCEEQLVSEAQDAMRKHVVFESSTLANQQYDLQMLFKVMESVNVEVDLRRFIRSARR 201
Q ++ D+Q+ E +S ++RKHV+FESS+LAN QYD QML VME+++ E D+R FI + +R
Sbjct: 374 QSILNDYQYVAEYRISNLTTSLRKHVIFESSSLANTQYDWQMLAPVMEAIDAESDIRAFILTHQR 438
BLAST of mRNA_H-elongata_contig18632.5068.1 vs. uniprot
Match: A0A024UXB4_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UXB4_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 2.150e-6 Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 1
Query: 7 QQVVTDFQWCEEQLVSEAQDAMRKHVVFESSTLANQQYDLQMLFKVMESVNVEVDLRRFIRSARREV 207
Q ++ D+Q E +S ++RKHV+FESS LAN QYD QML VME+V+ E D+R FI + +R V
Sbjct: 330 QSILNDYQHLAEYSISNLTSSLRKHVIFESSALANSQYDWQMLASVMEAVDAEGDIRAFILAHQRMV 396
BLAST of mRNA_H-elongata_contig18632.5068.1 vs. uniprot
Match: T0RID7_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0RID7_SAPDV) HSP 1 Score: 61.6 bits (148), Expect = 4.280e-6 Identity = 30/60 (50.00%), Postives = 44/60 (73.33%), Query Frame = 1
Query: 7 QQVVTDFQWCEEQLVSEAQDAMRKHVVFESSTLANQQYDLQMLFKVMESVNVEVDLRRFI 186
Q ++ D+Q EQ ++ ++RKH+VFES+TLAN QYD QM+ K +E+V+V+ DLR FI
Sbjct: 276 QSILNDYQTISEQRSTQLSTSLRKHIVFESATLANLQYDWQMVAKPLEAVDVDADLRAFI 335
BLAST of mRNA_H-elongata_contig18632.5068.1 vs. uniprot
Match: W4FBW5_9STRA (Uncharacterized protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FBW5_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 6.580e-6 Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 1
Query: 7 QQVVTDFQWCEEQLVSEAQDAMRKHVVFESSTLANQQYDLQMLFKVMESVNVEVDLRRFIRSARREV 207
Q ++ D+Q E +S ++RKHV+FESS LAN QYD QML VME+V+ E D+R FI + +R V
Sbjct: 348 QSILNDYQHMAEYSISNLTASLRKHVIFESSALANSQYDWQMLATVMEAVDAERDIRAFIVANQRMV 414
BLAST of mRNA_H-elongata_contig18632.5068.1 vs. uniprot
Match: A0A067BUI0_SAPPC (Uncharacterized protein (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BUI0_SAPPC) HSP 1 Score: 59.7 bits (143), Expect = 6.700e-6 Identity = 29/60 (48.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query: 7 QQVVTDFQWCEEQLVSEAQDAMRKHVVFESSTLANQQYDLQMLFKVMESVNVEVDLRRFI 186
Q ++ D+Q E ++ ++RKH+VFES+TLAN QYD QM+ K ME+V+V+ D+R FI
Sbjct: 91 QSILNDYQTISEHRSTQLTTSLRKHIVFESATLANLQYDWQMVAKPMEAVDVDADIRAFI 150 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18632.5068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig18632.5068.1 >prot_H-elongata_contig18632.5068.1 ID=prot_H-elongata_contig18632.5068.1|Name=mRNA_H-elongata_contig18632.5068.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=887bp EFQQVVTDFQWCEEQLVSEAQDAMRKHVVFESSTLANQQYDLQMLFKVMEback to top mRNA from alignment at H-elongata_contig18632:1386..7076+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig18632.5068.1 ID=mRNA_H-elongata_contig18632.5068.1|Name=mRNA_H-elongata_contig18632.5068.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5691bp|location=Sequence derived from alignment at H-elongata_contig18632:1386..7076+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig18632:1386..7076+ >mRNA_H-elongata_contig18632.5068.1 ID=mRNA_H-elongata_contig18632.5068.1|Name=mRNA_H-elongata_contig18632.5068.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=5322bp|location=Sequence derived from alignment at H-elongata_contig18632:1386..7076+ (Himanthalia elongata Himel1 dioecious)back to top |